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Publications of J. Ashburner

Books and proceedings

  1. K.J. Friston, J. Ashburner, S.J. Kiebel, T.E. Nichols, and W.D. Penny, editors. Statistical Parametric Mapping: The Analysis of Functional Brain Images. Academic Press, 2007. Keyword(s): introduction. [bibtex-entry]


  2. R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny. Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


Thesis

  1. J. Ashburner. Computational Neuroanatomy. PhD thesis, University College London, 2000. Keyword(s): spatial, registration, normalisation. [bibtex-entry]


Articles in journal or book chapters

  1. J. Ashburner and G. Ridgway. Symmetric Diffeomorphic Modeling of Longitudinal Structural MRI. Frontiers in Neuroscience, 6(197), 02 2013. [bibtex-entry]


  2. J. Ashburner. SPM: a history. NeuroImage, 2011. [bibtex-entry]


  3. J. Ashburner and K.J. Friston. Diffeomorphic registration using geodesic shooting and Gauss--Newton optimisation. NeuroImage, 55(3):954-967, 2011. [bibtex-entry]


  4. J. Ashburner and S. Klöppel. Multivariate models of inter-subject anatomical variability. NeuroImage, 56(2):422-439, 2011. [bibtex-entry]


  5. C. Chu, J. Mourão-Miranda, Y.C. Chiu, N. Kriegeskorte, G. Tan, and J. Ashburner. Utilizing temporal information in fMRI decoding: Classifier using kernel regression methods. NeuroImage, 58(2):560-571, 2011. [bibtex-entry]


  6. C. Chu, Y. Ni, G. Tan, C.J. Saunders, and J. Ashburner. Kernel regression for fMRI pattern prediction. NeuroImage, 56(2):662-673, 2011. [bibtex-entry]


  7. C. Lambert, L. Zrinzo, Z. Nagy, A. Lutti, M. Hariz, T. Foltynie, B. Draganski, J. Ashburner, and R. Frackowiak. Confirmation of functional zones within the human subthalamic nucleus: Patterns of connectivity and sub-parcellation using diffusion weighted imaging. Neuroimage, 2011. [bibtex-entry]


  8. N. Weiskopf, A. Lutti, G. Helms, M. Novak, J. Ashburner, and C. Hutton. Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT). NeuroImage, 54(3):2116-2124, 2011. [bibtex-entry]


  9. J. Ashburner. Computational anatomy with the SPM software. Magnetic Resonance Imaging, 2009. [bibtex-entry]


  10. J. Ashburner. Preparing fMRI data for statistical analysis. Functional MRI Techniques. Humana Press. Filippi M (ed.), 2009. [bibtex-entry]


  11. G. Helms, B. Draganski, R. Frackowiak, J. Ashburner, and N. Weiskopf. Improved segmentation of deep brain grey matter structures using magnetization transfer (MT) parameter maps. NeuroImage, 47(1):194-198, 2009. [bibtex-entry]


  12. C. Hutton, B. Draganski, J. Ashburner, and N. Weiskopf. A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging. NeuroImage, 48(2):371-380, 2009. [bibtex-entry]


  13. A. Klein, J. Andersson, B.A. Ardekani, J. Ashburner, B. Avants, M.-C. Chiang, G.E. Christensen, D.L. Collins, J. Gee, P. Hellier, J.H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thomson, T. Vercauteren, R.P. Woods, J.J. Mann, and R. Parsey. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage, 46(3):786-802, 2009. [bibtex-entry]


  14. J. Ashburner and K.J. Friston. Computing average shaped tissue probability templates. NeuroImage, 45(2):333-341, 2008. [bibtex-entry]


  15. K.J. Friston, C. Chu, Janaina Mourão-Miranda, Oliver Hulme, G. Rees, W.D. Penny, and J. Ashburner. Bayesian decoding of brain images. NeuroImage, 39(1):181-205, 2008. Keyword(s): Bayesian, multivariate. [bibtex-entry]


  16. C. Hutton, E. De Vita, J. Ashburner, R. Deichmann, and R. Turner. Voxel-based cortical thickness measurements in MRI. NeuroImage, 40(4):1701-1710, 2008. [bibtex-entry]


  17. C. M. Stonnington, G. Tan, S. Klöppel, C. Chu, B. Draganski, C.R Jack Jr, K. Chen, J. Ashburner, and R.S.J. Frackowiak. Interpreting scan data acquired from multiple scanners: A study with Alzheimer's disease. NeuroImage, 39(3):1180-1185, 2008. Keyword(s): mri. [bibtex-entry]


  18. J. Ashburner. A Fast Diffeomorphic Image Registration Algorithm. NeuroImage, 38(1):95-113, 2007. Keyword(s): spatial, registration, normalisation, MRI. [bibtex-entry]


  19. J. Crinion, J. Ashburner, A. Leff, M. Brett, C.J. Price, and K.J. Friston. Spatial normalization of lesioned brains: Performance evaluation and impact on fMRI analyses. NeuroImage, 37(3):866-875, 2007. Keyword(s): spatial, normalisation, mri. [bibtex-entry]


  20. K.J. Friston, J. Mattout, N. Trujillo-Bareto, J. Ashburner, and W.D. Penny. Variational free energy and the Laplace approximation. NeuroImage, 34(1):220-234, 2007. [bibtex-entry]


  21. L. Harrison, W.D. Penny, J. Ashburner, N. Trujillo-Bareto, and K.J. Friston. Diffusion-based spatial priors for imaging. NeuroImage, 38:677-695, 2007. Keyword(s): fMRI, GLM, spatial. [bibtex-entry]


  22. J. Ashburner and K.J. Friston. Unified segmentation. NeuroImage, 26:839-851, 2005. Keyword(s): spatial, VBM, Bayesian, registration, normalisation, MRI, segment. [bibtex-entry]


  23. A. Mechelli, C.J. Price, K.J. Friston, and J. Ashburner. Voxel-Based Morphometry of the Human Brain: Methods and Applications. Current Medical Imaging Reviews, pp 105-113, 2005. Keyword(s): VBM. [bibtex-entry]


  24. K.J. Friston and J. Ashburner. Generative and recognition models for neuroanatomy. NeuroImage, 23(1):21-24, 2004. Keyword(s): spatial, Bayesian, EM. [bibtex-entry]


  25. J. Ashburner and K.J. Friston. High-dimensional image warping. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


  26. J. Ashburner and K.J. Friston. Image segmentation. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


  27. J. Ashburner and K.J. Friston. Morphometry. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


  28. J. Ashburner and K.J. Friston. Rigid body registration. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


  29. J. Ashburner and K.J. Friston. Spatial normalization using basis functions. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): introduction. [bibtex-entry]


  30. J. Ashburner, J.G. Csernansky, C. Davatzikos, N.C. Fox, G.B. Frisoni, and P.M. Thomson. Computer-assisted imaging to assess brain structure in healthy and diseased brains. The Lancet Neurology, 2(2):79-88, 2003. Keyword(s): mri. [bibtex-entry]


  31. D.R. Gitelman, W.D. Penny, J. Ashburner, and K.J. Friston. Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution. NeuroImage, 19:200-207, 2003. Keyword(s): connectivity, fMRI, PPI. [bibtex-entry]


  32. F.G. Hillary, J. Steffener, B.B. Biswal, G. Lange, J. DeLuca, and J. Ashburner. FMRI technology and traumatic brain injury rehabilitation: Guidelines for methodological and conceptual pitfalls. Journal of Head Trauma Rehabilitation, 17(5):411-430, 2003. Keyword(s): mri. [bibtex-entry]


  33. K.J. Friston, D.E. Glaser, R.N.A. Henson, S.J. Kiebel, C. Phillips, and J. Ashburner. Classical and Bayesian Inference in Neuroimaging: Applications. NeuroImage, 16:484-512, 2002. Keyword(s): Bayesian, fMRI, PPM. [bibtex-entry]


  34. K.J. Friston, W.D. Penny, C. Phillips, S.J. Kiebel, G. Hinton, and J. Ashburner. Classical and Bayesian Inference in Neuroimaging: Theory. NeuroImage, 16:465-483, 2002. Keyword(s): Bayesian, PPM, EM, REML. [bibtex-entry]


  35. C. Good, R. Scahill, N.C. Fox, J. Ashburner, K.J. Friston, D. Chan, W.R. Crum, M.N. Rossor, and R.S.J. Frackowiak. Automatic Differentiation of Anatomical Patterns in the Human Brain: Validation with Studies of Degenerative Dementias. NeuroImage, 17(1):29-46, 2002. Keyword(s): mri. [bibtex-entry]


  36. C. Hutton, A. Bork, O. Josephs, R. Deichmann, J. Ashburner, and R. Turner. Image distortion correction in fMRI: A quantitative evaluation. NeuroImage, 16:217-240, 2002. [bibtex-entry]


  37. C.H. Salmond, J. Ashburner, F. Vargha-Khadem, A. Connelly, D. G. Gadian, and K.J. Friston. The precision of anatomical normalisation in the medial temporal lobe using spatial basis functions. NeuroImage, 17(1):507-512, 2002. Keyword(s): spatial. [bibtex-entry]


  38. C.H. Salmond, J. Ashburner, F. Vargha-Khadem, A. Connelly, and D. G. Gadian andK.J. Friston. The precision of anatomical normalisation in the medial temporal lobe using spatial basis functions. NeuroImage, 17(1):507-512, 2002. Keyword(s): spatial. [bibtex-entry]


  39. J. Andersson, J. Ashburner, and K.J. Friston. A global estimator unbiased by local changes. NeuroImage, 13(6):1193-1206, 2001. Keyword(s): spatial. [bibtex-entry]


  40. J. Andersson, C. Hutton, J. Ashburner, R. Turner, and K.J. Friston. Modelling geometric deformations in EPI time series. NeuroImage, 13(5):903-919, 2001. Keyword(s): spatial. [bibtex-entry]


  41. J. Ashburner and K.J. Friston. Why voxel-based morphometry should be used. NeuroImage, 14(6):1238-1243, 2001. Keyword(s): VBM, spatial. [bibtex-entry]


  42. M. Brett, A. Leff, C. Rorden, and J. Ashburner. Spatial Normalization of Brain Images with Focal Lesions Using Cost Function Masking. NeuroImage, 14(2):486-500, 2001. Keyword(s): spatial, normalisation, mri. [bibtex-entry]


  43. J. Ashburner, J. Andersson, and K.J. Friston. Image Registration using a Symmetric Prior - in Three-Dimensions. Human Brain Mapping, 9(4):212-225, 2000. Keyword(s): spatial, Bayesian, registration, MRI. [bibtex-entry]


  44. J. Ashburner and K.J. Friston. Voxel-Based Morphometry -- The Methods. NeuroImage, 11:805-821, 2000. Keyword(s): spatial, VBM, MRI. [bibtex-entry]


  45. J. Ashburner and K.J. Friston. Spatial Normalization. In A.W. Toga, editor, Brain Warping, pages 27-44. Academic Press, 1999. Keyword(s): spatial, normalisation, MRI. [bibtex-entry]


  46. J. Ashburner, J. Andersson, and K.J. Friston. High-Dimensional Nonlinear Image Registration using Symmetric Priors. NeuroImage, 9:619-628, 1999. Keyword(s): spatial, nonlinear, Bayesian, registration, MRI. [bibtex-entry]


  47. J. Ashburner and K.J. Friston. Nonlinear Spatial Normalization using Basis Functions. Human Brain Mapping, 7(4):254-266, 1999. Keyword(s): spatial, nonlinear, normalisation, MRI. [bibtex-entry]


  48. C.J. Price, D.J. Veltman, J. Ashburner, O. Josephs, and K.J. Friston. The critical relationship between the timing of the stimulus presentation and data acquisition in blocked designs with fMRI. NeuroImage, 10:36-44, 1999. Keyword(s): fMRI. [bibtex-entry]


  49. F.G. Woermann, S. Free, M. Koepp, J. Ashburner, and J.S. Duncan. Voxel-by-Voxel Comparison of Automatically Segmented Cerebral Gray Matter -- Rater-Independent Comparison of Structural MRI in Patients with Epilepsy. NeuroImage, 10(4):373-384, 1999. Keyword(s): mri. [bibtex-entry]


  50. J. Ashburner and K.J. Friston. High-Dimensional Nonlinear Image Registration. NeuroImage, 7(4):S737, 1998. Keyword(s): spatial, registration, MRI. [bibtex-entry]


  51. J. Ashburner and K.J. Friston. MRI Sensitivity Correction and Tissue Classification. NeuroImage, 7(4):S107, 1998. Keyword(s): spatial, MRI. [bibtex-entry]


  52. J. Ashburner, C. Hutton, R.S.J. Frackowiak, I. Johnsrude, C.J. Price, and K.J. Friston. Identifying Global Anatomical Differences: Deformation-Based Morphometry. Human Brain Mapping, 6(5):348-357, 1998. Keyword(s): spatial, normalisation, MRI. [bibtex-entry]


  53. J. Ashburner and K.J. Friston. Spatial transformation of images. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 43-58. Academic Press USA, 1997. Keyword(s): spatial, registration, normalisation, MRI, PET, fMRI. [bibtex-entry]


  54. J. Ashburner and K.J. Friston. Multimodal Image Coregistration and Partitioning - a Unified Framework. NeuroImage, 6(3):209-217, 1997. Keyword(s): spatial, registration, MRI, PET. [bibtex-entry]


  55. J. Ashburner and K.J. Friston. The role of registration and spatial normalization in detecting activations in functional imaging. Clinical MRI/Developments in MR, 7(1):26-28, 1997. Keyword(s): spatial, registration, MRI. [bibtex-entry]


  56. J. Ashburner, P. Neelin, D. L. Collins, A. C. Evans, and K.J. Friston. Incorporating Prior Knowledge into Image Registration. NeuroImage, 6:344-352, 1997. Keyword(s): Bayesian, spatial, registration, MRI. [bibtex-entry]


  57. S.J. Kiebel, J. Ashburner, J.B. Poline, and K.J. Friston. MRI and PET Coregistration - A Cross Validation of Statistical Parametric Mapping and Automated Image Registration. NeuroImage, 5:271-279, 1997. Keyword(s): PET, MRI, registration. [bibtex-entry]


  58. K.J. Friston, J. Ashburner, C. Frith, J.B. Poline, J. D. Heather, and R.S.J. Frackowiak. Spatial Registration and Normalization of Images. Human Brain Mapping, 2:165-189, 1995. Keyword(s): normalisation, registration. [bibtex-entry]


Conference articles

  1. C. Chu, D.A. Handwerker, P.A. Bandettini, and J. Ashburner. Measuring the Consistency of Global Functional Connectivity Using Kernel Regression Methods. In Pattern Recognition in NeuroImaging (PRNI), 2011 International Workshop on, pages 41-44, 2011. [bibtex-entry]


  2. J. Ashburner, J. Haslam, C. Taylor, V. J. Cunningham, and T. Jones. A Cluster Analysis Approach for the Characterization of Dynamic PET Data. In R. Myers, V. Cunningham, B. Dale, and T. Jones, editors, Quantification of Brain Function Using PET, pages 301-306, 1996. London, Academic Press. Keyword(s): clustering, PET. [bibtex-entry]



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