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Publications of A.P. Holmes

Thesis

  1. A.P. Holmes. Statistical Issues in Functional Brain Mapping. PhD thesis, University of Glasgow, December 1994. Keyword(s): RFT, PET, GLM. [bibtex-entry]


Articles in journal or book chapters

  1. T.E. Nichols and A.P. Holmes. Nonparametric approaches. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): nonparametric, RFT, group. [bibtex-entry]


  2. W.D. Penny, A.P. Holmes, and K.J. Friston. Hierarchical Models. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): Bayesian, GLM, group, introduction, RFX, hierarchical. [bibtex-entry]


  3. W.D. Penny, A.P. Holmes, and K.J. Friston. Random effects analysis. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): RFX, group, introduction. [bibtex-entry]


  4. T.E. Nichols and A.P. Holmes. Nonparametric Permutation Tests for Functional Neuroimaging: A Primer with Examples. Human Brain Mapping, 15:1-25, 2002. Keyword(s): nonparametric. [bibtex-entry]


  5. K.J. Friston, O. Josephs, E. Zarahn, A.P. Holmes, S. Rouquette, and J.B. Poline. To Smooth or Not to Smooth? Bias and Efficiency in fMRI Time-Series Analysis. NeuroImage, 12:196-208, 2000. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  6. J.B. Hopfinger, C. Buchel, A.P. Holmes, and K.J. Friston. A study of analysis parameters that influence the sensitivity of event-related fMRI analyses. NeuroImage, 11:326-333, 2000. Keyword(s): event-related, fMRI. [bibtex-entry]


  7. D. McGonigle, A. Howseman, B.S. Athwal, K.J. Friston, R.S.J. Frackowiak, and A.P. Holmes. Variability in fMRI: an examination of intersession differences. NeuroImage, 11(6):708-734, 2000. Keyword(s): RFX, group. [bibtex-entry]


  8. K.J. Friston, A.P. Holmes, C.J. Price, C. Buchel, and K.J. Worsley. Multisubject fMRI Studies and Conjunction Analyses. NeuroImage, 10:385-396, 1999. Keyword(s): group, conjunction, fMRI. [bibtex-entry]


  9. K.J. Friston, A.P. Holmes, and K.J. Worsley. How Many subjects constitute a study ?. NeuroImage, 10:1-5, 1999. Keyword(s): group, design. [bibtex-entry]


  10. S.J. Kiebel, J.B. Poline, K.J. Friston, A.P. Holmes, and K.J. Worsley. Robust Smoothness Estimation in Statistical Parametric Maps Using Standardized Residuals from the General Linear Model. NeuroImage, 10:756-766, 1999. Keyword(s): smoothness, RFT, GLM. [bibtex-entry]


  11. K.M. Petersson, T.E. Nichols, J.B. Poline, and A.P. Holmes. Statistical limitations in functional neuroimaging I. Non-inferential methods and statistical models. Phil. Trans. R. Soc. London B, 354:1239-1260, 1999. Keyword(s): introduction. [bibtex-entry]


  12. K.M. Petersson, T.E. Nichols, J.B. Poline, and A.P. Holmes. Statistical limitations in functional neuroimaging II. Signal detection and statistical inference. Phil. Trans. R. Soc. London B, 354:1261-1281, 1999. Keyword(s): introduction. [bibtex-entry]


  13. B. A. Strange, C.M. Portas, R. Dolan, A.P. Holmes, and K.J. Friston. Random effects analyses for event-related fMRI. NeuroImage, 9:36, 1999. Keyword(s): RFX, event-related, fMRI. [bibtex-entry]


  14. C. Buchel, A.P. Holmes, G. Rees, and K.J. Friston. Characterizing stimulus-response functions using nonlinear regressors in parametric fMRI experiments. NeuroImage, 8:140-148, 1998. Keyword(s): nonlinear, parametric, fMRI. [bibtex-entry]


  15. K.J. Friston, P. Fletcher, O. Josephs, A.P. Holmes, M.D. Rugg, and R. Turner. Event-related fMRI: characterizing differential responses. NeuroImage, 7:30-40, 1998. Keyword(s): event-related, fMRI. [bibtex-entry]


  16. A.P. Holmes, J.B. Poline, and K.J. Friston. Characterizing brain images with the general linear model. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 59-84. Academic Press USA, 1997. Keyword(s): GLM, introduction, PET, fMRI. [bibtex-entry]


  17. J.B. Poline, A.P. Holmes, K.J. Worsley, and K.J. Friston. Making statistical inferences. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 85-106. Academic Press USA, 1997. Keyword(s): RFT, GLM, introduction. [bibtex-entry]


  18. K.J. Friston, J.B. Poline, A.P. Holmes, C. Frith, and R.S.J. Frackowiak. A multivariate analysis of PET activation studies. Human Brain Mapping, 4:140-151, 1996. Keyword(s): connectivity, multivariate, PET. [bibtex-entry]


  19. A.P. Holmes, R. C. Blair, J.D.G. Watson, and I. Ford. Non-Parametric Analysis of Statistic Images From Functional Mapping Experiments. Journal of Cerebral Blood Flow and Metabolism, 16:7-22, 1996. Keyword(s): nonparametric, PET. [bibtex-entry]


  20. K.J. Friston, A.P. Holmes, J.B. Poline, P. J. Grasby, S. C. R. Williams, R.S.J. Frackowiak, and R. Turner. Analysis of fMRI Time Series Revisited. NeuroImage, 2:45-53, 1995. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  21. K.J. Friston, A.P. Holmes, J.B. Poline, C.J. Price, and C. Frith. Detecting Activations in PET and fMRI: Levels of Inference and Power. NeuroImage, 40:223-235, 1995. Keyword(s): RFT, PET, fMRI. [bibtex-entry]


  22. K.J. Friston, A.P. Holmes, K.J. Worsley, J.B. Poline, C. Frith, and R.S.J. Frackowiak. Statistical Parametric Maps in Functional Imaging: A General Linear Approach. Human Brain Mapping, 2:189-210, 1995. Keyword(s): GLM, RFT. [bibtex-entry]


Conference articles

  1. A.P. Holmes and K.J. Friston. Generalisability, Random Effects and Population Inference. In NeuroImage, volume 7, pages S754, 1998. Keyword(s): group, RFX. [bibtex-entry]



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