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Publications of year 2009

Articles in journal or book chapters

  1. J. Ashburner. Computational anatomy with the SPM software. Magnetic Resonance Imaging, 2009.
    @Article{ john_computanat,
    author = {J. Ashburner},
    title = {Computational anatomy with the {SPM} software},
    journal = {Magnetic Resonance Imaging},
    year = {2009},
    volume = {},
    number = {},
    pages = {},
    doi = {10.1016/j.mri.2009.01.006},
    keyword = {} 
    }
    


  2. J. Ashburner. Preparing fMRI data for statistical analysis. Functional MRI Techniques. Humana Press. Filippi M (ed.), 2009.
    @Article{ ashburner2009preparing,
    title = {Preparing fMRI data for statistical analysis},
    author = {J. Ashburner},
    journal = {Functional MRI Techniques. Humana Press. Filippi M (ed.)},
    year = {2009} 
    }
    


  3. C.C. Chen, R.N.A. Henson, K.E. Stephan, J. Kilner, and K.J. Friston. Forward and backward connections in the brain: A DCM study of functional asymmetries. NeuroImage, 45(2):453-462, 2009. Keyword(s): DCM, MEG.
    @Article{ cc_asymm,
    author = {C.C. Chen and R.N.A. Henson and K.E. Stephan and J. Kilner and K.J. Friston},
    title = {Forward and backward connections in the brain: A DCM study of functional asymmetries},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {45},
    number = {2},
    pages = {453--462},
    doi = {10.1016/j.neuroimage.2008.12.041},
    keyword = {DCM,MEG},
    pdf = {} 
    }
    


  4. J. Chumbley and K.J. Friston. False Discovery Rate Revisited: FDR and Topological Inference Using Gaussian Random Fields. NeuroImage, 44(2):62-70, 2009. Keyword(s): FDR, RFT, topological.
    @Article{ justin_fdr,
    author = {J. Chumbley and K.J. Friston},
    title = {False Discovery Rate Revisited: FDR and Topological Inference Using {G}aussian Random Fields},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {44},
    number = {2},
    pages = {62--70},
    doi = {10.1016/j.neuroimage.2008.05.021},
    keyword = {FDR,RFT,topological} 
    }
    


  5. J. Daunizeau, K.J. Friston, and S.J. Kiebel. Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models. Physica D: nonlinear phenomena, 238(21):2089-2118, 2009.
    @Article{ jean_vbstoch,
    author = {J. Daunizeau and K.J. Friston and S.J. Kiebel},
    title = {Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models},
    journal = {Physica D: nonlinear phenomena},
    year = {2009},
    volume = {238},
    number = {21},
    pages = {2089--2118},
    doi = {10.1016/j.physd.2009.08.002} 
    }
    


  6. J. Daunizeau, S.J. Kiebel, and K.J. Friston. Dynamic causal modelling of distributed electromagnetic responses. NeuroImage, 2009. Keyword(s): DCM, EEG, MEG.
    @Article{ jean_distributed,
    author = {J. Daunizeau and S.J. Kiebel and K.J. Friston},
    title = {Dynamic causal modelling of distributed electromagnetic responses},
    journal = {{N}euro{I}mage},
    year = {2009},
    doi = {10.1016/j.neuroimage.2009.04.062},
    keyword = {DCM,EEG,MEG} 
    }
    


  7. K.J. Friston, J. Daunizeau, and S.J. Kiebel. Reinforcement Learning or Active Inference?. PLOS One, 4(7):e6421, 2009. Keyword(s): DEM.
    @Article{ karl_reinforcement_learning,
    author = {K.J. Friston and J. Daunizeau and S.J. Kiebel},
    title = {Reinforcement Learning or Active Inference?},
    journal = {PLOS One},
    year = {2009},
    volume = {4},
    number = {7},
    pages = {e6421},
    doi = {10.1371/journal.pone.0006421},
    pdf = {/spm/doc/papers/Reinforcement_Learning_or_Active_Inference.pdf},
    keyword = {DEM} 
    }
    


  8. K.J. Friston and S.J. Kiebel. Cortical circuits for perceptual inference. Neural Networks, 22:1093-1104, 2009. Keyword(s): DEM.
    @Article{ karl_cortical_circuits,
    author = {K.J. Friston and S.J. Kiebel},
    title = {Cortical circuits for perceptual inference},
    journal = {Neural Networks},
    year = {2009},
    volume = {22},
    number = {},
    pages = {1093--1104},
    doi = {10.1016/j.neunet.2009.07.023},
    pdf = {/spm/doc/papers/Cortical_circuits_for_perceptual_inference.pdf},
    keyword = {DEM} 
    }
    


  9. M.I. Garrido, J. Kilner, S.J. Kiebel, T. Baldeweg, and K.J. Friston. Repetition suppression and plasticity in the human brain. NeuroImage, 48(1):269-279, 2009.
    @Article{ marta_rsp,
    author = {M.I. Garrido and J. Kilner and S.J. Kiebel and T. Baldeweg and K.J. Friston},
    title = {Repetition suppression and plasticity in the human brain},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {48},
    number = {1},
    pages = {269--279 },
    doi = {10.1016/j.neuroimage.2009.06.034},
    pdf = {/spm/doc/papers/Garrido_NeuroImage_48_269_2009.pdf} 
    
    
    }
    


  10. G. Helms, B. Draganski, R. Frackowiak, J. Ashburner, and N. Weiskopf. Improved segmentation of deep brain grey matter structures using magnetization transfer (MT) parameter maps. NeuroImage, 47(1):194-198, 2009.
    @Article{ helms2009improved,
    title = {Improved segmentation of deep brain grey matter structures using magnetization transfer (MT) parameter maps},
    author = {Helms, G. and Draganski, B. and Frackowiak, R. and Ashburner, J. and Weiskopf, N.},
    journal = {{N}euro{I}mage},
    volume = {47},
    number = {1},
    pages = {194--198},
    year = {2009} 
    }
    


  11. R.N.A. Henson, J. Mattout, C. Phillips, and K.J. Friston. Selecting forward models for MEG source-reconstruction using model-evidence. NeuroImage, 46(1):168-176, 2009. Keyword(s): MEG.
    @Article{ rnah_forward,
    author = {R.N.A. Henson and J. Mattout and C. Phillips and K.J. Friston},
    title = {Selecting forward models for MEG source-reconstruction using model-evidence},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {46},
    number = {1},
    pages = {168--176},
    doi = {10.1016/j.neuroimage.2009.01.062},
    keyword = {MEG},
    pdf = {/spm/doc/papers/HensonEtAl_Neuroimage_09_MEG_Forward_Models.pdf} 
    
    
    }
    


  12. R.N.A. Henson, E. Mouchlianitis, and K.J. Friston. MEG and EEG data fusion: Simultaneous localisation of face-evoked responses. NeuroImage, 2009. Keyword(s): EEG, MEG.
    @Article{ rnah_fusion,
    author = {R.N.A. Henson and E. Mouchlianitis and K.J. Friston},
    title = {MEG and EEG data fusion: Simultaneous localisation of face-evoked responses},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {},
    number = {},
    pages = {},
    doi = {10.1016/j.neuroimage.2009.04.063},
    keyword = {EEG, MEG},
    pdf = {/spm/doc/papers/HensonEtAl_Neuroimage_09_MEEG_fusion.pdf} 
    
    
    }
    


  13. C. Hutton, B. Draganski, J. Ashburner, and N. Weiskopf. A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging. NeuroImage, 48(2):371-380, 2009.
    @Article{ hutton2009comparison,
    title = {A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging},
    author = {Hutton, C. and Draganski, B. and Ashburner, J. and Weiskopf, N.},
    journal = {{N}euro{I}mage},
    volume = {48},
    number = {2},
    pages = {371--380},
    year = {2009} 
    }
    


  14. S.J. Kiebel, M.I. Garrido, R. Moran, C.C. Chen, and K.J. Friston. Dynamic causal modeling for EEG and MEG. Human Brain Mapping, 30(6):1866-1876, 2009. Keyword(s): DCM, EEG, MEG.
    @Article{ stefan_dcm_meeg,
    author = {S.J. Kiebel and M.I. Garrido and R. Moran and C.C. Chen and K.J. Friston},
    title = {Dynamic causal modeling for EEG and MEG},
    journal = {{H}uman {B}rain {M}apping},
    year = {2009},
    volume = {30},
    number = {6},
    pages = {1866--1876},
    doi = {10.1002/hbm.20775},
    keyword = {DCM, EEG, MEG} 
    }
    


  15. A. Klein, J. Andersson, B.A. Ardekani, J. Ashburner, B. Avants, M.-C. Chiang, G.E. Christensen, D.L. Collins, J. Gee, P. Hellier, J.H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thomson, T. Vercauteren, R.P. Woods, J.J. Mann, and R. Parsey. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage, 46(3):786-802, 2009.
    @Article{ klein_evaluation,
    author = {A. Klein and J. Andersson and B.A. Ardekani and J. Ashburner and B. Avants and M.-C. Chiang and G.E. Christensen and D.L. Collins and J. Gee and P. Hellier and J.H. Song and M. Jenkinson and C. Lepage and D. Rueckert and P. Thomson and T. Vercauteren and R.P. Woods and J.J. Mann and R. Parsey},
    title = {Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {46},
    number = {3},
    pages = {786--802},
    doi = {10.1016/j.neuroimage.2008.12.037},
    keyword = {} 
    }
    


  16. R. Moran, K.E. Stephan, T. Seidenbecher, H.C. Pape, R. Dolan, and K.J. Friston. Dynamic causal models of steady-state responses. NeuroImage, 44(3):796-811, 2009. Keyword(s): DCM.
    @Article{ dcm_ssr,
    author = {R. Moran and K.E. Stephan and T. Seidenbecher and H.C. Pape and R. Dolan and K.J. Friston},
    title = {Dynamic causal models of steady-state responses},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {44},
    number = {3},
    pages = {796--811},
    doi = {10.1016/j.neuroimage.2008.09.048},
    keyword = {DCM} 
    }
    


  17. W.D. Penny, V. Litvak, L. Fuentemilla, E. Duzel, and K.J. Friston. Dynamic Causal Models for phase coupling. Journal of Neuroscience Methods, 183(1):19-30, 2009.
    @Article{ dcm_phase,
    author = {W.D. Penny and V. Litvak and L. Fuentemilla and E. Duzel and K.J. Friston},
    title = {Dynamic {C}ausal {M}odels for phase coupling},
    journal = {{J}ournal of {N}euroscience Methods},
    year = {2009},
    volume = {183},
    number = {1},
    pages = {19--30} 
    }
    


  18. M.J. Rosa, S. Bestmann, L. Harrison, and W.D. Penny. Bayesian Model Selection Maps for Group Studies. NeuroImage, 49(1):217-224, 2009.
    @Article{ mjrosa_bms,
    author = {M.J. Rosa and S. Bestmann and L. Harrison and W.D. Penny},
    title = {Bayesian {M}odel {S}election {M}aps for {G}roup {S}tudies},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {49},
    number = {1},
    pages = {217--224},
    doi = {10.1016/j.neuroimage.2009.08.051} 
    }
    


  19. M.J. Rosa, J. Kilner, F. Blankenburg, O. Josephs, and W.D. Penny. Estimating the transfer function from neuronal activity to BOLD using simultaneous EEG-fMRI. NeuroImage, 2009.
    @Article{ mjrosa_eegfmri,
    author = {M.J. Rosa and J. Kilner and F. Blankenburg and O. Josephs and W.D. Penny},
    title = {Estimating the transfer function from neuronal activity to {BOLD} using simultaneous {EEG}-f{MRI}},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {},
    number = {},
    pages = {},
    doi = {10.1016/j.neuroimage.2009.09.011} 
    }
    


  20. K.E. Stephan, K.J. Friston, and C. Frith. Dysconnection in Schizophrenia: From Abnormal Synaptic Plasticity to Failures of Self-monitoring. Schizophrenia Bulletin, 35(3):509-527, 2009.
    @Article{ klaas_dysconnect,
    author = {K.E. Stephan and K.J. Friston and C. Frith},
    title = {Dysconnection in Schizophrenia: From Abnormal Synaptic Plasticity to Failures of Self-monitoring},
    journal = {Schizophrenia Bulletin},
    year = {2009},
    volume = {35},
    number = {3},
    pages = {509--527},
    doi = {10.1093/schbul/sbn176},
    pdf = {/spm/doc/papers/Stephan_SchizophrBull_35_509_2009.pdf} 
    
    
    }
    


  21. K.E. Stephan, W.D. Penny, J. Daunizeau, R. Moran, and K.J. Friston. Bayesian model selection for group studies. NeuroImage, 46(3):1004-10174, 2009. Keyword(s): DCM, BMC, Bayesian, group.
    @Article{ klaas_bms,
    author = {K.E. Stephan and W.D. Penny and J. Daunizeau and R. Moran and K.J. Friston},
    title = {Bayesian model selection for group studies},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {46},
    number = {3},
    pages = {1004--10174},
    doi = {10.1016/j.neuroimage.2009.03.025},
    keyword = {DCM,BMC,Bayesian,group},
    pdf = {/spm/doc/papers/Stephan_NeuroImage_46_1004_2009.pdf} 
    
    
    }
    


  22. K.E. Stephan, M. Tittgemeyer, T.R. Knosche, R. Moran, and K.J. Friston. Tractography-based priors for dynamic causal models. NeuroImage, 47(1):1628-1638, 2009.
    @Article{ klaas_dcm_dwi,
    author = {K.E. Stephan and M. Tittgemeyer and T.R. Knosche and R. Moran and K.J. Friston},
    title = {Tractography-based priors for dynamic causal models},
    journal = {{N}euro{I}mage},
    year = {2009},
    volume = {47},
    number = {1},
    pages = {1628--1638 },
    doi = {10.1016/j.neuroimage.2009.05.096},
    pdf = {/spm/doc/papers/Stephan_NeuroImage_47_1628_2009.pdf} 
    
    
    }
    


Conference articles

  1. R. Moran, K.E. Stephan, F. Jung, R. Graf, R. Dolan, K.J. Friston, and M. Tittgemeyer. DCM for Steady State Responses: a case study of anaesthesia dept. In Proc Soc for Neuroscience, 2009.
    @InProceedings{ dcm_ssr_anaesthesia,
    author = {R. Moran and K.E. Stephan and F. Jung and R. Graf and R. Dolan and K.J. Friston and M. Tittgemeyer},
    title = {DCM for Steady State Responses: a case study of anaesthesia dept},
    booktitle = {Proc Soc for Neuroscience},
    year = {2009} 
    }
    



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