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Publications of year 2011

Articles in journal or book chapters

  1. J. Ashburner. SPM: a history. NeuroImage, 2011.
    @Article{ ashburner2011spm,
    title = {{SPM}: a history},
    author = {J. Ashburner},
    journal = {{N}euro{I}mage},
    year = {2011} 
    }
    


  2. J. Ashburner and K.J. Friston. Diffeomorphic registration using geodesic shooting and Gauss--Newton optimisation. NeuroImage, 55(3):954-967, 2011.
    @Article{ ashburner2011diffeomorphic,
    title = {Diffeomorphic registration using geodesic shooting and {G}auss--{N}ewton optimisation},
    author = {J. Ashburner and K.J. Friston},
    journal = {{N}euro{I}mage},
    volume = {55},
    number = {3},
    pages = {954--967},
    year = {2011} 
    }
    


  3. J. Ashburner and S. Klöppel. Multivariate models of inter-subject anatomical variability. NeuroImage, 56(2):422-439, 2011.
    @Article{ ashburner2011multivariate,
    title = {Multivariate models of inter-subject anatomical variability},
    author = {J. Ashburner and S. Kl\"{o}ppel},
    journal = {{N}euro{I}mage},
    volume = {56},
    number = {2},
    pages = {422--439},
    year = {2011} 
    }
    


  4. G. Barnes, V. Litvak, M.J. Brookes, and K.J. Friston. Controlling false positive rates in mass-multivariate tests for electromagnetic responses. NeuroImage, 56(3):1072-1081, 2011.
    @Article{ Barnes20111072,
    title = {Controlling false positive rates in mass-multivariate tests for electromagnetic responses},
    author = {G. Barnes and V. Litvak and M.J. Brookes and K.J. Friston},
    journal = {{N}euro{I}mage},
    volume = {56},
    number = {3},
    pages = {1072--1081},
    year = {2011},
    note = {},
    doi = {10.1016/j.neuroimage.2011.02.072} 
    }
    


  5. Kay H. Brodersen, Florent Haiss, Cheng Soon Ong, Fabienne Jung, Marc Tittgemeyer, Joachim M. Buhmann, Bruno Weber, and K.E. Stephan. Model-based feature construction for multivariate decoding. NeuroImage, 56(2):601-615, 2011.
    @Article{ Brodersen_NeuroImage_56_601_2011,
    author = {Kay H. Brodersen and Florent Haiss and Cheng Soon Ong and Fabienne Jung and Marc Tittgemeyer and Joachim M. Buhmann and Bruno Weber and K.E. Stephan},
    title = {Model-based feature construction for multivariate decoding},
    journal = {{N}euro{I}mage},
    year = {2011},
    volume = {56},
    number = {2},
    pages = {601--615},
    doi = {10.1016/j.neuroimage.2010.04.036},
    pdf = {/spm/doc/papers/Brodersen_NeuroImage_56_601_2011.pdf} 
    
    
    }
    


  6. K.H Brodersen, T.M. Schofield, A.P. Leff, C.S. Ong, E.I. Lomakina, J.M. Buhmann, and K.E. Stephan. Generative Embedding for Model-Based Classification of fMRI Data. PLOS Computational Biology, 7(6):e1002079, 2011. Keyword(s): DCM.
    @Article{ Brodersen_PlosCB_e1002079,
    author = {K.H Brodersen and T.M. Schofield and A.P. Leff and C.S. Ong and E.I. Lomakina and J.M. Buhmann and K.E. Stephan},
    title = {Generative Embedding for Model-Based Classification of fMRI Data},
    journal = {PLOS Computational Biology},
    year = {2011},
    volume = {7},
    number = {6},
    pages = {e1002079},
    doi = {10.1371/journal.pcbi.1002079},
    keyword = {DCM},
    pdf = {/spm/doc/papers/Brodersen_PLoS_7_e1002079_2011.pdf} 
    
    
    }
    


  7. C. Chu, J. Mourão-Miranda, Y.C. Chiu, N. Kriegeskorte, G. Tan, and J. Ashburner. Utilizing temporal information in fMRI decoding: Classifier using kernel regression methods. NeuroImage, 58(2):560-571, 2011.
    @Article{ chu2011utilizing,
    title = {Utilizing temporal information in fMRI decoding: Classifier using kernel regression methods},
    author = {Chu, C. and Mour\~{a}o-Miranda, J. and Chiu, Y.C. and Kriegeskorte, N. and Tan, G. and Ashburner, J.},
    journal = {{N}euro{I}mage},
    volume = {58},
    number = {2},
    pages = {560--571},
    year = {2011} 
    }
    


  8. C. Chu, Y. Ni, G. Tan, C.J. Saunders, and J. Ashburner. Kernel regression for fMRI pattern prediction. NeuroImage, 56(2):662-673, 2011.
    @Article{ chu2011kernel,
    title = {Kernel regression for fMRI pattern prediction},
    author = {Chu, C. and Ni, Y. and Tan, G. and Saunders, C.J. and Ashburner, J.},
    journal = {{N}euro{I}mage},
    volume = {56},
    number = {2},
    pages = {662--673},
    year = {2011} 
    }
    


  9. J. Daunizeau, O. David, and K.E. Stephan. Dynamic causal modelling: A critical review of the biophysical and statistical foundations. NeuroImage, 58:312-322, 2011. Keyword(s): DCM.
    @Article{ Daunizeau_NI_2011,
    author = {J. Daunizeau and O. David and K.E. Stephan},
    title = {Dynamic causal modelling: A critical review of the biophysical and statistical foundations},
    journal = {{N}euro{I}mage},
    year = {2011},
    volume = {58},
    number = {},
    pages = {312--322},
    doi = {10.1016/j.neuroimage.2009.11.062},
    keyword = {DCM},
    pdf = {/spm/doc/papers/Daunizeau_NeuroImage_58_312_2011.pdf} 
    
    
    }
    


  10. J. Daunizeau, K. Preuschoff, K.J. Friston, and K.E. Stephan. Optimizing experimental design for comparing models of brain function. PLoS Comp. Biol., 7(11):e1002280, 2011. Keyword(s): DCM.
    @Article{ Daunizeau_PLosCB_2011,
    author = {J. Daunizeau and K. Preuschoff and K.J. Friston and K.E. Stephan},
    title = {Optimizing experimental design for comparing models of brain function},
    journal = {PLoS Comp. Biol.},
    year = {2011},
    volume = {7},
    number = {11},
    pages = {e1002280},
    doi = {10.1371/journal.pcbi.1002280},
    keyword = {DCM},
    pdf = {} 
    }
    


  11. Jörn Diedrichsen, G. Ridgway, K.J. Friston, and T. Wiestler. Comparing the similarity and spatial structure of neural representations: A pattern-component model. NeuroImage, 55(4):1665-1678, 2011.
    @Article{ Diedrichsen20111665,
    author = {J\"{o}rn Diedrichsen and G. Ridgway and K.J. Friston and T. Wiestler},
    title = {Comparing the similarity and spatial structure of neural representations: A pattern-component model},
    journal = {{N}euro{I}mage},
    volume = {55},
    number = {4},
    pages = {1665--1678},
    year = {2011},
    note = {},
    doi = {10.1016/j.neuroimage.2011.01.044},
    keywords = {} 
    }
    


  12. R.N.A. Henson, D.G. Wakeman, V. Litvak, and K.J. Friston. A parametric empirical Bayesian framework for the EEG/MEG inverse problem: generative models for multi-subject and multi-modal integration. Frontiers in Human Neuroscience, 5(76), 2011. Keyword(s): EEG, MEG, Bayesian.
    @Article{ Henson_FiHN_2011,
    author = {R.N.A. Henson and D.G. Wakeman and V. Litvak and K.J. Friston},
    title = {A parametric empirical Bayesian framework for the EEG/MEG inverse problem: generative models for multi-subject and multi-modal integration},
    journal = {Frontiers in Human Neuroscience},
    year = {2011},
    volume = {5},
    number = {76},
    pages = {},
    doi = {10.3389/fnhum.2011.00076},
    keyword = {EEG, MEG, Bayesian},
    pdf = {/spm/doc/papers/HensonEtAl_FiHN_11_PEB_MEEG.pdf} 
    }
    


  13. C. Lambert, L. Zrinzo, Z. Nagy, A. Lutti, M. Hariz, T. Foltynie, B. Draganski, J. Ashburner, and R. Frackowiak. Confirmation of functional zones within the human subthalamic nucleus: Patterns of connectivity and sub-parcellation using diffusion weighted imaging. Neuroimage, 2011.
    @Article{ lambert2011confirmation,
    title = {Confirmation of functional zones within the human subthalamic nucleus: Patterns of connectivity and sub-parcellation using diffusion weighted imaging},
    author = {Lambert, C. and Zrinzo, L. and Nagy, Z. and Lutti, A. and Hariz, M. and Foltynie, T. and Draganski, B. and Ashburner, J. and Frackowiak, R.},
    journal = {Neuroimage},
    year = {2011} 
    }
    


  14. V. Litvak, J. Mattout, S.J. Kiebel, C. Phillips, R.N.A. Henson, J. Kilner, G. Barnes, R. Oostenveld, J. Daunizeau, G. Flandin, W.D. Penny, and K.J. Friston. EEG and MEG data analysis in SPM8. Comput. Intell. Neurosci., 2011(852961), 2011. Keyword(s): introduction, EEG, MEG.
    @Article{ meeg_spm8,
    author = {V. Litvak and J. Mattout and S.J. Kiebel and C. Phillips and R.N.A. Henson and J. Kilner and G. Barnes and R. Oostenveld and J. Daunizeau and G. Flandin and W.D. Penny and K.J. Friston},
    title = {{EEG} and {MEG} data analysis in {SPM8}},
    journal = {Comput. Intell. Neurosci.},
    year = {2011},
    volume = {2011},
    number = {852961},
    pages = {},
    doi = {10.1155/2011/852961},
    pdf = {/spm/doc/papers/852961.pdf},
    keyword = {introduction, EEG, MEG} 
    }
    


  15. R. Moran, N. Mallet, V. Litvak, R.J. Dolan, P.J. Magill, K.J. Friston, and P. Brown. Alterations in Brain Connectivity Underlying Beta Oscillations in Parkinsonism. PLoS Comput Biol, 7(8):e1002124, 08 2011.
    @Article{ Moran2012e1002124,
    title = {Alterations in Brain Connectivity Underlying Beta Oscillations in Parkinsonism},
    author = {R. Moran and N. Mallet and V. Litvak and R.J. Dolan and P.J. Magill and K.J. Friston and P. Brown},
    journal = {PLoS Comput Biol},
    year = {2011},
    month = {08},
    volume = {7},
    pages = {e1002124},
    number = {8},
    doi = {10.1371/journal.pcbi.1002124} 
    }
    


  16. R. Moran, K.E. Stephan, R. Dolan, and K.J. Friston. Neural fields, spectral responses and lateral connections. NeuroImage, 55(4):1694-1708, 2011.
    @Article{ Moran2011,
    author = {R. Moran and K.E. Stephan and R. Dolan and K.J. Friston},
    title = {Neural fields, spectral responses and lateral connections},
    journal = {{N}euro{I}mage},
    volume = {55},
    number = {4},
    pages = {1694--1708},
    year = {2011},
    doi = {10.1016/j.neuroimage.2011.01.012},
    url = {http://www.sciencedirect.com/science/article/pii/S1053811911000309} 
    
    
    }
    


  17. D.A. Pinotsis and K.J. Friston. Neural fields, spectral responses and lateral connections. NeuroImage, 55(1):39-48, 2011. Keyword(s): DCM.
    @Article{ Pinotsis201139,
    author = {D.A. Pinotsis and K.J. Friston},
    title = {Neural fields, spectral responses and lateral connections},
    journal = {{N}euro{I}mage},
    volume = {55},
    number = {1},
    pages = {39--48},
    year = {2011},
    doi = {10.1016/j.neuroimage.2010.11.081},
    url = {http://www.sciencedirect.com/science/article/pii/S1053811910015594},
    keywords = {DCM} 
    }
    


  18. M.J. Rosa, J. Kilner, and W.D. Penny. Bayesian Comparison of Neurovascular Coupling Models Using EEG-fMRI. PLOS Computational Biology, 7(6):e1002070, 2011. Keyword(s): BMC.
    @Article{ mjr_bmc_coupling,
    author = {M.J. Rosa and J. Kilner and W.D. Penny},
    title = {Bayesian Comparison of Neurovascular Coupling Models Using EEG-fMRI},
    journal = {PLOS Computational Biology},
    year = {2011},
    volume = {7},
    number = {6},
    pages = {e1002070},
    doi = {10.1371/journal.pcbi.1002070},
    keyword = {BMC} 
    }
    


  19. N. Weiskopf, A. Lutti, G. Helms, M. Novak, J. Ashburner, and C. Hutton. Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT). NeuroImage, 54(3):2116-2124, 2011.
    @Article{ weiskopf2011unified,
    title = {Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT)},
    author = {Weiskopf, N. and Lutti, A. and Helms, G. and Novak, M. and Ashburner, J. and Hutton, C.},
    journal = {{N}euro{I}mage},
    volume = {54},
    number = {3},
    pages = {2116--2124},
    year = {2011} 
    }
    


Conference articles

  1. C. Chu, D.A. Handwerker, P.A. Bandettini, and J. Ashburner. Measuring the Consistency of Global Functional Connectivity Using Kernel Regression Methods. In Pattern Recognition in NeuroImaging (PRNI), 2011 International Workshop on, pages 41-44, 2011.
    @InProceedings{ chu2011measuring,
    title = {Measuring the Consistency of Global Functional Connectivity Using Kernel Regression Methods},
    author = {Chu, C. and Handwerker, D.A. and Bandettini, P.A. and J. Ashburner},
    booktitle = {Pattern Recognition in NeuroImaging (PRNI), 2011 International Workshop on},
    pages = {41--44},
    year = {2011} 
    }
    



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