___ ____ __ __ / __)( _ \( \/ ) \__ \ )___/ ) ( Statistical Parametric Mapping (___/(__) (_/\/\_) SPM12 : Updates to Revision 7771 ________________________________________________________________________ Download spm12_updates_r7771.zip and unpack it into your spm12 directory, overwriting any existing files. Mon 13 Jan 11:46:36 GMT 2020 ________________________________________________________________________ ------------------------------------------------------------------------ r6226 | guillaume | 2014-10-03 14:35:10 +0100 (Fri, 03 Oct 2014) | 2 lines Changed paths: M /trunk/spm_results_ui.m Bug fix: circumvent bug in MATLAB R2010b. Thanks to Michael M. ------------------------------------------------------------------------ r6227 | guillaume | 2014-10-06 13:23:58 +0100 (Mon, 06 Oct 2014) | 2 lines Changed paths: M /trunk/spm_getSPM.m Bug fix: convert Gamma from sparse to full. Thanks to Martin D. ------------------------------------------------------------------------ r6228 | vladimir | 2014-10-06 15:58:25 +0100 (Mon, 06 Oct 2014) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m Added Bernadette's cross-frequency function to batch ------------------------------------------------------------------------ r6229 | vladimir | 2014-10-06 15:59:20 +0100 (Mon, 06 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_convert.m bug fix (should not matter for most people), thanks to Bin ------------------------------------------------------------------------ r6230 | guillaume | 2014-10-06 17:22:38 +0100 (Mon, 06 Oct 2014) | 2 lines Changed paths: M /trunk/spm_render.m Bug fix: flipud is only defined for 2D matrices with earlier MATLAB versions. ------------------------------------------------------------------------ r6231 | vladimir | 2014-10-07 14:42:16 +0100 (Tue, 07 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_inv_extract.m Bug fix (thanks to Carlo). ------------------------------------------------------------------------ r6232 | guillaume | 2014-10-09 18:03:26 +0100 (Thu, 09 Oct 2014) | 1 line Changed paths: M /trunk/spm_results_nidm.m Enhancement: update of NIDM export. ------------------------------------------------------------------------ r6233 | karl | 2014-10-12 10:43:50 +0100 (Sun, 12 Oct 2014) | 1 line Changed paths: M /trunk/spm_ADEM_update.m M /trunk/spm_DEM_eval.m M /trunk/spm_dcm_delay.m M /trunk/spm_dcm_mtf.m M /trunk/spm_dx.m M /trunk/spm_length.m M /trunk/spm_nlsi_GN.m M /trunk/spm_nlsi_GN_H.m M /trunk/spm_nlsi_N.m M /trunk/spm_plot_ci.m M /trunk/spm_ssm2s.m A /trunk/spm_zeros.m minor upgrades and robustness checks to core inversion schemes ------------------------------------------------------------------------ r6234 | karl | 2014-10-12 10:59:10 +0100 (Sun, 12 Oct 2014) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_csd_int.m A /trunk/toolbox/dcm_meeg/spm_csd_int_IS.m A /trunk/toolbox/dcm_meeg/spm_csd_sel.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm_data.m A /trunk/toolbox/dcm_meeg/spm_dcm_tfm_mmultimodal.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm_response.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm_results.m M /trunk/toolbox/dcm_meeg/spm_fp_cmc_tfm.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_tfm.m M /trunk/toolbox/dcm_meeg/spm_tfm_priors.m upgrades to DCM for time frequency models (TFM) ------------------------------------------------------------------------ r6235 | karl | 2014-10-12 11:03:05 +0100 (Sun, 12 Oct 2014) | 1 line Changed paths: A /trunk/toolbox/DEM/DEMO_VL.m A /trunk/toolbox/DEM/DEM_demo_Lagrangian.m A /trunk/toolbox/DEM/DEM_demo_Lagrangian_flow.m M /trunk/toolbox/DEM/DEM_demo_MDP_maze.m M /trunk/toolbox/DEM/DEM_demo_duet.m M /trunk/toolbox/DEM/DEM_demo_texture.m A /trunk/toolbox/DEM/DEM_morphogenesis.m A /trunk/toolbox/DEM/spm_fx_Lagrangian.m upgrade to (DEM Toolbox) active inference demo routines ------------------------------------------------------------------------ r6236 | karl | 2014-10-12 11:03:44 +0100 (Sun, 12 Oct 2014) | 1 line Changed paths: M /trunk/toolbox/Neural_Models/spm_csd_demo.m M /trunk/toolbox/Neural_Models/spm_induced_demo.m M /trunk/toolbox/Neural_Models/spm_induced_optimise.m revision of neuronal modelling demonstration routines (modelling induced responses and epilepsy) ------------------------------------------------------------------------ r6237 | karl | 2014-10-12 11:08:13 +0100 (Sun, 12 Oct 2014) | 1 line Changed paths: D /trunk/toolbox/dcm_meeg/spm_csd_sel.m D /trunk/toolbox/dcm_meeg/spm_dcm_tfm_mmultimodal.m A /trunk/toolbox/dcm_meeg/spm_dcm_tfm_multimodal.m (from /trunk/toolbox/dcm_meeg/spm_dcm_tfm_mmultimodal.m:6236) ------------------------------------------------------------------------ r6238 | karl | 2014-10-13 10:38:23 +0100 (Mon, 13 Oct 2014) | 1 line Changed paths: M /trunk/spm_unvec.m M /trunk/toolbox/DEM/DEM_morphogenesis.m Upgrades to morphogenesis demo ------------------------------------------------------------------------ r6239 | guillaume | 2014-10-13 15:53:48 +0100 (Mon, 13 Oct 2014) | 1 line Changed paths: M /trunk/config/spm_cfg_mfx.m Bug fix: handle all non-sphericity options. ------------------------------------------------------------------------ r6240 | spm | 2014-10-13 17:30:56 +0100 (Mon, 13 Oct 2014) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_rejectvisual.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_statistics_analytic.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/private/browse_topoplotVAR.m M /trunk/external/fieldtrip/private/rejectvisual_channel.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/rejectvisual_trial.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/utilities/ft_convert_coordsys.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m update of external/fieldtrip to r9900 ------------------------------------------------------------------------ r6241 | bernadette | 2014-10-13 19:30:01 +0100 (Mon, 13 Oct 2014) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_ind_data.m problem with wavelet padding at end of peristimulus time window solved ------------------------------------------------------------------------ r6242 | guillaume | 2014-10-14 12:16:02 +0100 (Tue, 14 Oct 2014) | 2 lines Changed paths: M /trunk/spm_cva_ui.m Bug fix: accounting for multiple sessions. Thanks to Alexa M. ------------------------------------------------------------------------ r6243 | guillaume | 2014-10-14 12:19:46 +0100 (Tue, 14 Oct 2014) | 2 lines Changed paths: M /trunk/spm.m Bug fix: better initialisation of FieldTrip for standalone SPM. ------------------------------------------------------------------------ r6244 | vladimir | 2014-10-15 12:15:09 +0100 (Wed, 15 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_convert.m Fix for a problem with time axis (thanks to Bin) ------------------------------------------------------------------------ r6245 | guillaume | 2014-10-15 12:22:15 +0100 (Wed, 15 Oct 2014) | 2 lines Changed paths: M /trunk/spm_atlas.m M /trunk/spm_check_registration.m M /trunk/spm_file.m M /trunk/spm_platform.m M /trunk/spm_toolbox.m Enhancement: use spm_platform('desktop') instead of desktop('-inuse'). ------------------------------------------------------------------------ r6246 | volkmar | 2014-10-15 13:49:22 +0100 (Wed, 15 Oct 2014) | 1 line Changed paths: M /trunk/@slover/fill_defaults.m M /trunk/@slover/private/pr_basic_ui.m Adjust slover slice params based on actual slice thickness. ------------------------------------------------------------------------ r6247 | guillaume | 2014-10-15 14:58:56 +0100 (Wed, 15 Oct 2014) | 2 lines Changed paths: A /trunk/spm_sparse_regression.m A /trunk/toolbox/DEM/DEMO_SLR.m New feature: sparse logistic regression. ------------------------------------------------------------------------ r6248 | guillaume | 2014-10-17 13:00:54 +0100 (Fri, 17 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_inv_image_display.m Bug fix: display mesh or image depending on export. Thanks to Rik H. ------------------------------------------------------------------------ r6249 | guillaume | 2014-10-29 12:16:07 +0000 (Wed, 29 Oct 2014) | 2 lines Changed paths: M /trunk/spm_defaults.m Doc: fix typo. ------------------------------------------------------------------------ r6252 | vladimir | 2014-10-30 16:06:30 +0000 (Thu, 30 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_reduce.m A /trunk/spm_eeg_reduce_imagcsd.m New data reduction plug-in ------------------------------------------------------------------------ r6253 | vladimir | 2014-10-30 16:29:39 +0000 (Thu, 30 Oct 2014) | 1 line Changed paths: M /trunk/spm_eeg_reduce_imagcsd.m Fix for the case of no signal toolbox ------------------------------------------------------------------------ r6254 | karl | 2014-11-04 18:24:21 +0000 (Tue, 04 Nov 2014) | 1 line Changed paths: M /trunk/spm_dcm_post_hoc.m M /trunk/spm_lotka_volterra.m M /trunk/spm_rand_power_law.m M /trunk/toolbox/DEM/DEM_morphogenesis.m M /trunk/toolbox/Neural_Models/spm_induced_demo.m M /trunk/toolbox/dcm_meeg/spm_csd_int.m M /trunk/toolbox/spectral/spm_ccf2mar.m Minor bug fixes for demo of induced responses (and other prettification) ------------------------------------------------------------------------ r6255 | christophe | 2014-11-05 09:55:02 +0000 (Wed, 05 Nov 2014) | 2 lines Changed paths: M /trunk/config/spm_cfg_imcalc.m M /trunk/spm_defaults.m Adding a small feature to spm_imcalc. If the output filename is left empty (''), then the name of the 1st image, prepended with 'i' is used. ------------------------------------------------------------------------ r6256 | guillaume | 2014-11-05 11:46:16 +0000 (Wed, 05 Nov 2014) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Bug fix: Vi is not necessarily defined for second level models. Thanks to Yang D. ------------------------------------------------------------------------ r6257 | vladimir | 2014-11-07 14:51:00 +0000 (Fri, 07 Nov 2014) | 1 line Changed paths: M /trunk/spm_eeg_grandmean.m Bug fix (thanks to Thomas C.) ------------------------------------------------------------------------ r6258 | guillaume | 2014-11-07 18:15:40 +0000 (Fri, 07 Nov 2014) | 2 lines Changed paths: M /trunk/config/spm_rewrite_job.m M /trunk/toolbox/FieldMap/FieldMap_Run.m M /trunk/toolbox/FieldMap/FieldMap_applyvdm.m M /trunk/toolbox/FieldMap/tbx_cfg_fieldmap.m Refactoring: unify FieldMap's 'Calculate VDM' batch module. ------------------------------------------------------------------------ r6259 | bernadette | 2014-11-10 12:08:18 +0000 (Mon, 10 Nov 2014) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_ind_data.m option for user to specify baseline ------------------------------------------------------------------------ r6260 | vladimir | 2014-11-14 12:22:54 +0000 (Fri, 14 Nov 2014) | 1 line Changed paths: M /trunk/spm_DisplayTimeSeries.m M /trunk/spm_eeg_review_callbacks.m Changes to prevent crashes when displaying data with NaNs (NaNs are replaced with zeros for display purposes). ------------------------------------------------------------------------ r6262 | karl | 2014-11-17 13:47:56 +0000 (Mon, 17 Nov 2014) | 1 line Changed paths: D /trunk/spm_fx_dcm.m D /trunk/spm_fx_fmri_dcm.m D /trunk/spm_gx_dcm.m M /trunk/spm_gx_fmri.m M /trunk/spm_gx_fmri_linear.m M /trunk/spm_gx_hdm.m M /trunk/spm_gx_state_fmri.m removal of redundant scripts (and change to help text) ------------------------------------------------------------------------ r6263 | karl | 2014-11-17 13:48:36 +0000 (Mon, 17 Nov 2014) | 1 line Changed paths: M /trunk/spm_DEM_qU.m M /trunk/spm_lotka_volterra.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_morphogenesis.m M /trunk/toolbox/DEM/spm_gx_hdm_sck.m Morphogenesis demo added to DEM toolbox ------------------------------------------------------------------------ r6264 | vladimir | 2014-11-18 13:46:51 +0000 (Tue, 18 Nov 2014) | 1 line Changed paths: M /trunk/@meeg/montage.m bug fix ------------------------------------------------------------------------ r6265 | guillaume | 2014-11-24 17:34:32 +0000 (Mon, 24 Nov 2014) | 2 lines Changed paths: M /trunk/spm_eeg_review_callbacks.m Enhancement: zoom in scalp mode available from the contextual menu (as ginput does not work as expected in R2014b). ------------------------------------------------------------------------ r6266 | vladimir | 2014-11-25 14:29:58 +0000 (Tue, 25 Nov 2014) | 1 line Changed paths: M /trunk/spm_eeg_inv_Mesh2Voxels.m Bug fix (thanks to Simone). ------------------------------------------------------------------------ r6267 | guillaume | 2014-11-25 16:12:43 +0000 (Tue, 25 Nov 2014) | 2 lines Changed paths: M /trunk/spm_preproc_run.m Doc: display filename of image being segmented. ------------------------------------------------------------------------ r6268 | guillaume | 2014-11-27 16:22:59 +0000 (Thu, 27 Nov 2014) | 2 lines Changed paths: M /trunk/man/manual.pdf M /trunk/man/manual.tex A /trunk/man/matlab-prettifier.sty A /trunk/man/multi A /trunk/man/multi/figures A /trunk/man/multi/figures/figure1.png A /trunk/man/multi/figures/figure10.png A /trunk/man/multi/figures/figure11.png A /trunk/man/multi/figures/figure12.png A /trunk/man/multi/figures/figure12a.png A /trunk/man/multi/figures/figure12b.png A /trunk/man/multi/figures/figure13.png A /trunk/man/multi/figures/figure14.png A /trunk/man/multi/figures/figure15.png A /trunk/man/multi/figures/figure16.png A /trunk/man/multi/figures/figure2.png A /trunk/man/multi/figures/figure3.png A /trunk/man/multi/figures/figure4.png A /trunk/man/multi/figures/figure5.png A /trunk/man/multi/figures/figure6.png A /trunk/man/multi/figures/figure7.png A /trunk/man/multi/figures/figure8.png A /trunk/man/multi/figures/figure9.png A /trunk/man/multi/multi.tex Doc: Adding new multimodal, multisubject dataset chapter in the manual - contributed by Rik. ------------------------------------------------------------------------ r6269 | guillaume | 2014-11-28 15:00:49 +0000 (Fri, 28 Nov 2014) | 2 lines Changed paths: M /trunk/man/manual.pdf M /trunk/man/multi/multi.tex Doc: add instructions to download multimodal dataset from the command line. ------------------------------------------------------------------------ r6270 | karl | 2014-11-29 12:04:48 +0000 (Sat, 29 Nov 2014) | 1 line Changed paths: M /trunk/spm_ADEM.m M /trunk/spm_ADEM_update.m M /trunk/spm_DEM_eval.m M /trunk/spm_DEM_qU.m M /trunk/spm_dx.m M /trunk/spm_int_L.m M /trunk/spm_softmax.m M /trunk/toolbox/DEM/DEM_morphogenesis.m upgrades to morphogenesis routine in DEM box ------------------------------------------------------------------------ r6271 | karl | 2014-11-29 12:12:41 +0000 (Sat, 29 Nov 2014) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig spelling correction ------------------------------------------------------------------------ r6272 | karl | 2014-11-29 12:18:16 +0000 (Sat, 29 Nov 2014) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_morphogenesis.m resetting of demo parameters ------------------------------------------------------------------------ r6273 | karl | 2014-11-29 12:44:04 +0000 (Sat, 29 Nov 2014) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_morphogenesis.m Resetting of parameters for morphogenesis routine ------------------------------------------------------------------------ r6274 | karl | 2014-12-01 08:33:05 +0000 (Mon, 01 Dec 2014) | 1 line Changed paths: M /trunk/spm_ADEM_update.m M /trunk/spm_ALAP.m M /trunk/toolbox/DEM/DEM_demo_duet.m Upgrade to birdsong communication demo in the DEM toolbox ------------------------------------------------------------------------ r6275 | will | 2014-12-01 08:41:18 +0000 (Mon, 01 Dec 2014) | 1 line Changed paths: A /trunk/toolbox/mci A /trunk/toolbox/mci/README.m A /trunk/toolbox/mci/demos A /trunk/toolbox/mci/demos/mci_compare_forward.m A /trunk/toolbox/mci/demos/mci_compare_gradients.m A /trunk/toolbox/mci/demos/mci_compare_jacobians.m A /trunk/toolbox/mci/demos/mci_compare_sensitivities.m A /trunk/toolbox/mci/demos/mci_compare_setup.m A /trunk/toolbox/mci/demos/mci_demo_lds.m A /trunk/toolbox/mci/demos/mci_demo_linear.m A /trunk/toolbox/mci/demos/mci_demo_mfx_lds.m A /trunk/toolbox/mci/demos/mci_demo_nmm.m A /trunk/toolbox/mci/demos/mci_demo_rfx_linear.m A /trunk/toolbox/mci/demos/mci_demo_rfx_nmm.m A /trunk/toolbox/mci/gradients A /trunk/toolbox/mci/gradients/spm_mci_adjoint.m A /trunk/toolbox/mci/gradients/spm_mci_adjoint_int.m A /trunk/toolbox/mci/gradients/spm_mci_adjoint_sun.m A /trunk/toolbox/mci/gradients/spm_mci_flow_sun.m A /trunk/toolbox/mci/gradients/spm_mci_flow_t.m A /trunk/toolbox/mci/gradients/spm_mci_fwd.m A /trunk/toolbox/mci/gradients/spm_mci_grad_curve.m A /trunk/toolbox/mci/gradients/spm_mci_grad_ind.m A /trunk/toolbox/mci/gradients/spm_mci_joint.m A /trunk/toolbox/mci/gradients/spm_mci_joint_grad.m A /trunk/toolbox/mci/gradients/spm_mci_sens.m A /trunk/toolbox/mci/gradients/spm_mci_sens_init.m A /trunk/toolbox/mci/gradients/spm_mci_sens_sun.m A /trunk/toolbox/mci/inference A /trunk/toolbox/mci/inference/spm_mci_chk.m A /trunk/toolbox/mci/inference/spm_mci_fixed.m A /trunk/toolbox/mci/inference/spm_mci_glike.m A /trunk/toolbox/mci/inference/spm_mci_glike_deriv.m A /trunk/toolbox/mci/inference/spm_mci_gprior_deriv.m A /trunk/toolbox/mci/inference/spm_mci_init_flow.m A /trunk/toolbox/mci/inference/spm_mci_init_flow_xtr.m A /trunk/toolbox/mci/inference/spm_mci_lgv.m A /trunk/toolbox/mci/inference/spm_mci_like_ind.m A /trunk/toolbox/mci/inference/spm_mci_mfx.m A /trunk/toolbox/mci/inference/spm_mci_mh.m A /trunk/toolbox/mci/inference/spm_mci_mh_update.m A /trunk/toolbox/mci/inference/spm_mci_minit.m A /trunk/toolbox/mci/inference/spm_mci_obsnoise.m A /trunk/toolbox/mci/inference/spm_mci_phm.m A /trunk/toolbox/mci/inference/spm_mci_pop.m A /trunk/toolbox/mci/inference/spm_mci_popdef.m A /trunk/toolbox/mci/inference/spm_mci_post.m A /trunk/toolbox/mci/inference/spm_mci_priors.m A /trunk/toolbox/mci/inference/spm_mci_progress.m A /trunk/toolbox/mci/inference/spm_mci_random.m A /trunk/toolbox/mci/inference/spm_mci_report.m A /trunk/toolbox/mci/inference/spm_mci_switch.m A /trunk/toolbox/mci/inference/spm_mci_switch_prep.m A /trunk/toolbox/mci/inference/spm_mci_update_cov.m A /trunk/toolbox/mci/inference/spm_mci_vw_init.m A /trunk/toolbox/mci/inference/spm_mvtpdf.m A /trunk/toolbox/mci/inference/spm_nwcov.m A /trunk/toolbox/mci/inference/spm_nwpost.m A /trunk/toolbox/mci/inference/spm_nwrnd.m A /trunk/toolbox/mci/inference/spm_wishrnd.m A /trunk/toolbox/mci/mci_setpath.m A /trunk/toolbox/mci/models A /trunk/toolbox/mci/models/mci_exp_init.m A /trunk/toolbox/mci/models/mci_interp_init.m A /trunk/toolbox/mci/models/mci_lds_dfdx.m A /trunk/toolbox/mci/models/mci_lds_fx.m A /trunk/toolbox/mci/models/mci_lds_gen.m A /trunk/toolbox/mci/models/mci_lds_group_data.m A /trunk/toolbox/mci/models/mci_lds_gx.m A /trunk/toolbox/mci/models/mci_lds_lat2par.m A /trunk/toolbox/mci/models/mci_lds_par2lat.m A /trunk/toolbox/mci/models/mci_lds_params.m A /trunk/toolbox/mci/models/mci_lds_plot_fit.m A /trunk/toolbox/mci/models/mci_lds_plot_params.m A /trunk/toolbox/mci/models/mci_lds_struct.m A /trunk/toolbox/mci/models/mci_linear_deriv.m A /trunk/toolbox/mci/models/mci_linear_gen.m A /trunk/toolbox/mci/models/mci_linear_like.m A /trunk/toolbox/mci/models/mci_linear_plot_fit.m A /trunk/toolbox/mci/models/mci_linear_post.m A /trunk/toolbox/mci/models/mci_linear_struct.m A /trunk/toolbox/mci/models/mci_nmm_fx_delay.m A /trunk/toolbox/mci/models/mci_nmm_gen.m A /trunk/toolbox/mci/models/mci_nmm_params.m A /trunk/toolbox/mci/models/mci_nmm_r2_gx.m A /trunk/toolbox/mci/models/mci_nmm_r2p2_dfdp.m A /trunk/toolbox/mci/models/mci_nmm_r2p2_dfdx.m A /trunk/toolbox/mci/models/mci_nmm_r2p2_fx.m A /trunk/toolbox/mci/models/mci_nmm_r2p6_fx.m A /trunk/toolbox/mci/models/mci_nmm_struct.m A /trunk/toolbox/mci/models/mci_phase_dfdp.m A /trunk/toolbox/mci/models/mci_phase_dfdx.m A /trunk/toolbox/mci/models/mci_phase_fx.m A /trunk/toolbox/mci/models/mci_phase_gx.m A /trunk/toolbox/mci/models/mci_phase_init.m A /trunk/toolbox/mci/plotting A /trunk/toolbox/mci/plotting/mci_plot_dist.m A /trunk/toolbox/mci/plotting/mci_plot_dist_multi.m A /trunk/toolbox/mci/plotting/mci_plot_noiseSD.m A /trunk/toolbox/mci/plotting/mci_plot_outputs.m ------------------------------------------------------------------------ r6276 | karl | 2014-12-03 11:22:54 +0000 (Wed, 03 Dec 2014) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_duet.m minor update to birdsong demo ------------------------------------------------------------------------ r6277 | guillaume | 2014-12-04 12:16:52 +0000 (Thu, 04 Dec 2014) | 2 lines Changed paths: M /trunk/toolbox/mci/demos/mci_compare_gradients.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint_sun.m M /trunk/toolbox/mci/gradients/spm_mci_fwd.m M /trunk/toolbox/mci/gradients/spm_mci_grad_ind.m M /trunk/toolbox/mci/gradients/spm_mci_joint.m M /trunk/toolbox/mci/gradients/spm_mci_sens.m M /trunk/toolbox/mci/gradients/spm_mci_sens_init.m M /trunk/toolbox/mci/gradients/spm_mci_sens_sun.m M /trunk/toolbox/mci/inference/spm_mci_fixed.m M /trunk/toolbox/mci/inference/spm_mci_lgv.m M /trunk/toolbox/mci/inference/spm_mci_like_ind.m M /trunk/toolbox/mci/inference/spm_mci_mfx.m M /trunk/toolbox/mci/inference/spm_mci_mh.m M /trunk/toolbox/mci/inference/spm_mci_mh_update.m M /trunk/toolbox/mci/inference/spm_mci_obsnoise.m M /trunk/toolbox/mci/inference/spm_mci_pop.m M /trunk/toolbox/mci/inference/spm_mci_post.m M /trunk/toolbox/mci/inference/spm_mci_random.m M /trunk/toolbox/mci/inference/spm_mci_report.m M /trunk/toolbox/mci/inference/spm_wishrnd.m M /trunk/toolbox/mci/mci_setpath.m M /trunk/toolbox/mci/models/mci_interp_init.m M /trunk/toolbox/mci/models/mci_lds_plot_fit.m M /trunk/toolbox/mci/models/mci_lds_plot_params.m M /trunk/toolbox/mci/models/mci_lds_struct.m M /trunk/toolbox/mci/models/mci_linear_struct.m M /trunk/toolbox/mci/models/mci_nmm_r2p2_dfdx.m M /trunk/toolbox/mci/models/mci_nmm_struct.m M /trunk/toolbox/mci/plotting/mci_plot_dist.m M /trunk/toolbox/mci/plotting/mci_plot_dist_multi.m Doc: minor syntax changes. ------------------------------------------------------------------------ r6278 | guillaume | 2014-12-04 13:20:20 +0000 (Thu, 04 Dec 2014) | 3 lines Changed paths: M /trunk/spm_DisplayTimeSeries.m M /trunk/spm_eeg_review_switchDisplay.m Bug fix: don't replace NaN with 0 when data are meeg object. Enhancement: reduce number of warnings displayed. ------------------------------------------------------------------------ r6279 | guillaume | 2014-12-04 17:30:13 +0000 (Thu, 04 Dec 2014) | 2 lines Changed paths: M /trunk/man/manual.pdf M /trunk/man/multi/figures/figure1.png M /trunk/man/multi/figures/figure10.png M /trunk/man/multi/figures/figure11.png M /trunk/man/multi/figures/figure12.png D /trunk/man/multi/figures/figure12a.png D /trunk/man/multi/figures/figure12b.png M /trunk/man/multi/figures/figure13.png M /trunk/man/multi/figures/figure14.png M /trunk/man/multi/figures/figure15.png M /trunk/man/multi/figures/figure16.png M /trunk/man/multi/figures/figure2.png M /trunk/man/multi/figures/figure3.png M /trunk/man/multi/figures/figure4.png M /trunk/man/multi/figures/figure5.png M /trunk/man/multi/figures/figure6.png M /trunk/man/multi/figures/figure7.png M /trunk/man/multi/figures/figure8.png M /trunk/man/multi/figures/figure9.png M /trunk/man/multi/multi.tex Doc: various minor edits and optipng. ------------------------------------------------------------------------ r6280 | guillaume | 2014-12-05 14:52:06 +0000 (Fri, 05 Dec 2014) | 2 lines Changed paths: M /trunk/spm_design_flexible.m Enhancement: allow N-way interactions. ------------------------------------------------------------------------ r6281 | spm | 2014-12-05 19:00:45 +0000 (Fri, 05 Dec 2014) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_corr.m M /trunk/external/fieldtrip/connectivity/private/warning_once.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_filter_event.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_headshape.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_voltype.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/getdimsiz.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_eve.m M /trunk/external/fieldtrip/fileio/private/readmarkerfile.m M /trunk/external/fieldtrip/fileio/private/warning_once.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_voltype.m M /trunk/external/fieldtrip/forward/private/warning_once.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcewrite.m M /trunk/external/fieldtrip/ft_timelockbaseline.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/private/ft_voltype.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_voltype.m A /trunk/external/fieldtrip/plotting/private/matlabversion.m M /trunk/external/fieldtrip/plotting/private/warning_once.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/private/filter_with_correction.m M /trunk/external/fieldtrip/preproc/private/fir_filterdcpadded.m M /trunk/external/fieldtrip/preproc/private/warning_once.m M /trunk/external/fieldtrip/private/browse_multiplotER.m M /trunk/external/fieldtrip/private/fixdimord.m A /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/getdimsiz.m M /trunk/external/fieldtrip/private/interp_gridded.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/warning_once.m M /trunk/external/fieldtrip/specest/ft_specest_wavelet.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/warning_once.m A /trunk/external/fieldtrip/statfun/ft_statfun_intersubcorr.m M /trunk/external/fieldtrip/statfun/private/warning_once.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_parcellation.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/private/determine_segmentationstyle.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m A /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m M /trunk/external/fieldtrip/utilities/private/warning_once.m update of external/fieldtrip to r10023 ------------------------------------------------------------------------ r6282 | karl | 2014-12-05 21:57:47 +0000 (Fri, 05 Dec 2014) | 1 line Changed paths: M /trunk/spm_ADEM_update.m M /trunk/toolbox/DEM/DEM_demo_duet.m Further revision to birdsong duet demo ------------------------------------------------------------------------ r6283 | karl | 2014-12-08 10:35:12 +0000 (Mon, 08 Dec 2014) | 1 line Changed paths: M /trunk/spm_ADEM.m M /trunk/toolbox/DEM/DEM_morphogenesis.m Upgrade of morphogenesis demo (restriction matrix added to spm_ADEM) ------------------------------------------------------------------------ r6284 | guillaume | 2014-12-09 13:19:47 +0000 (Tue, 09 Dec 2014) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_headers.m Doc: cosmetics. ------------------------------------------------------------------------ r6285 | guillaume | 2014-12-09 15:52:59 +0000 (Tue, 09 Dec 2014) | 2 lines Changed paths: M /trunk/spm_atlas.m Enhancement: atlas labels can be selected by their indices. ------------------------------------------------------------------------ r6286 | vladimir | 2014-12-17 17:30:02 +0000 (Wed, 17 Dec 2014) | 1 line Changed paths: M /trunk/man/multi/multi.tex Minor text corrections from Saskia ------------------------------------------------------------------------ r6287 | spm | 2014-12-18 13:15:44 +0000 (Thu, 18 Dec 2014) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/mxSerialize.m M /trunk/external/fieldtrip/forward/private/lmoutrn.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_regressconfound.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m M /trunk/external/fieldtrip/inverse/private/ft_progress.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/private/ft_progress.m M /trunk/external/fieldtrip/private/browse_simpleFFT.m M /trunk/external/fieldtrip/private/lmoutrn.m M /trunk/external/fieldtrip/private/mxSerialize.m A /trunk/external/fieldtrip/private/pipeline-skeleton.html A /trunk/external/fieldtrip/private/print_tim.m M /trunk/external/fieldtrip/src/mxSerialize.m A /trunk/external/fieldtrip/statfun/ft_statfun_correlationT.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/printstruct.m A /trunk/external/fieldtrip/utilities/private/lmoutrn.m M /trunk/external/fieldtrip/utilities/private/mxSerialize.m A /trunk/external/fieldtrip/utilities/private/pinvNx2.m update of external/fieldtrip to r10060 ------------------------------------------------------------------------ r6288 | guillaume | 2014-12-18 13:18:38 +0000 (Thu, 18 Dec 2014) | 2 lines Changed paths: M /trunk/man/manual.pdf Doc: new compilation of the PDF manual. ------------------------------------------------------------------------ r6289 | guillaume | 2014-12-18 15:55:02 +0000 (Thu, 18 Dec 2014) | 3 lines Changed paths: M /trunk/@nifti/private/nifti1struc.m M /trunk/@nifti/private/write_hdr_raw.m M /trunk/spm_contrasts.m Bug fix: remove "implicit conversion from numeric to char" warnings in Octave. Workaround for "octave_base_value::int64_scalar_value(): wrong type argument 'sq_string'" error. ------------------------------------------------------------------------ r6290 | karl | 2014-12-20 22:11:50 +0000 (Sat, 20 Dec 2014) | 1 line Changed paths: M /trunk/spm_ADEM.m M /trunk/spm_ADEM_update.m M /trunk/spm_ALAP.m M /trunk/spm_DEM.m M /trunk/spm_DEM_qU.m M /trunk/spm_LAP_eval.m M /trunk/spm_dx.m M /trunk/spm_lotka_volterra.m M /trunk/spm_softmax.m M /trunk/toolbox/DEM/ADEM_SHC_demo.m M /trunk/toolbox/DEM/ADEM_cued_response.m A /trunk/toolbox/DEM/ADEM_eyeblink.m M /trunk/toolbox/DEM/ADEM_observe.m M /trunk/toolbox/DEM/ADEM_pursuit.m M /trunk/toolbox/DEM/ADEM_response_set.m M /trunk/toolbox/DEM/DEM_Dendrites.mat M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_connectivity_fMRI.m M /trunk/toolbox/DEM/DEM_demo_dendrite.m M /trunk/toolbox/DEM/DEM_morphogenesis.m M /trunk/toolbox/DEM/spm_fx_dem_observe.m a series of simplifications and minor debugging to Dem Toolbox routines: plus addition of eyeblink (Pavlovian conditioning) demo ------------------------------------------------------------------------ r6291 | karl | 2014-12-22 11:15:19 +0000 (Mon, 22 Dec 2014) | 1 line Changed paths: M /trunk/spm_nlsi_GN.m M /trunk/toolbox/DEM/ADEM_eyeblink.m M /trunk/toolbox/DEM/DEMO_VL.m Minor upgrades to demonstration routines ------------------------------------------------------------------------ r6292 | spm | 2014-12-23 11:43:40 +0000 (Tue, 23 Dec 2014) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_statistics_analytic.m M /trunk/external/fieldtrip/ft_volumedownsample.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/prepare_freq_matrices.m M /trunk/external/fieldtrip/private/univariate2bivariate.m M /trunk/external/fieldtrip/spm2fieldtrip.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/private/getdimord.m update of external/fieldtrip to r10087 ------------------------------------------------------------------------ r6293 | guillaume | 2014-12-23 18:15:57 +0000 (Tue, 23 Dec 2014) | 2 lines Changed paths: M /trunk/@meeg/delete.m M /trunk/config/spm_cfg_eeg_delete.m Enhancement: add a try/catch statement around delete (if same dataset is selected several times using Dependency). ------------------------------------------------------------------------ r6294 | karl | 2014-12-31 16:47:47 +0000 (Wed, 31 Dec 2014) | 2 lines Changed paths: M /trunk/spm_dcm_bma.m M /trunk/spm_nlsi_N.m A /trunk/tests/ROBOT_DCM_LAPACE.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_search_eeg.m M /trunk/toolbox/dcm_meeg/spm_fy_erp.m Bayesian model averaging routine modified to accept DCM structures (plus other minor redundancy fixes) Addition of variational Laplace test routine ------------------------------------------------------------------------ r6296 | guillaume | 2015-01-02 16:20:19 +0000 (Fri, 02 Jan 2015) | 2 lines Changed paths: M /trunk/tests/ROBOT_DCM_EEG.m D /trunk/tests/ROBOT_DCM_LAPACE.m A /trunk/tests/ROBOT_DCM_LAPLACE.m (from /trunk/tests/ROBOT_DCM_LAPACE.m:6294) M /trunk/tests/ROBOT_DCM_fMRI.m Fix typos. ------------------------------------------------------------------------ r6297 | karl | 2015-01-05 10:37:27 +0000 (Mon, 05 Jan 2015) | 1 line Changed paths: M /trunk/spm_dcm_bma.m A /trunk/spm_dcm_group.m A /trunk/spm_dcm_group_BMA.m M /trunk/spm_dcm_post_hoc.m M /trunk/spm_fieldindices.m M /trunk/spm_logdet.m A /trunk/tests/ROBOT_DCM_LAPACE.m (from /trunk/tests/ROBOT_DCM_LAPACE.m:6294) M /trunk/toolbox/DEM/ADEM_eyeblink.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m Hierarchical DCM routines added ------------------------------------------------------------------------ r6298 | vladimir | 2015-01-05 12:18:23 +0000 (Mon, 05 Jan 2015) | 1 line Changed paths: M /trunk/spm_eeg_merge.m Speed-up (no functional change). Thanks to Guillaume. ------------------------------------------------------------------------ r6299 | guillaume | 2015-01-08 12:56:00 +0000 (Thu, 08 Jan 2015) | 3 lines Changed paths: M /trunk/spm.m M /trunk/spm_dcm_group.m M /trunk/spm_dcm_group_BMA.m M /trunk/spm_figure.m D /trunk/tests/ROBOT_DCM_LAPACE.m M /trunk/tests/ROBOT_DCM_LAPLACE.m * Enhancement: option to bring the MATLAB command window to front. * SVN properties. ------------------------------------------------------------------------ r6300 | spm | 2015-01-12 15:01:46 +0000 (Mon, 12 Jan 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/forward/private/project_elec.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/private/project_elec.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/align_itab2spm.m M /trunk/external/fieldtrip/utilities/private/project_elec.m update of external/fieldtrip to r10095 ------------------------------------------------------------------------ r6301 | guillaume | 2015-01-12 17:23:08 +0000 (Mon, 12 Jan 2015) | 2 lines Changed paths: M /trunk/config/spm_run_voi.m M /trunk/spm_eeg_inv_fmripriors.m M /trunk/spm_uw_apply.m Refactoring: call spm_write_vol instead of loop around spm_write_plane. ------------------------------------------------------------------------ r6302 | vladimir | 2015-01-13 16:11:27 +0000 (Tue, 13 Jan 2015) | 1 line Changed paths: M /trunk/@meeg/private/checkmeeg.m Deblank condition labels (thanks to Nils) ------------------------------------------------------------------------ r6303 | adeel | 2015-01-14 10:09:38 +0000 (Wed, 14 Jan 2015) | 1 line Changed paths: M /trunk/spm_dcm_fmri_csd.m Correcting a typo: hC =exp(4) to hC = 1/128. ------------------------------------------------------------------------ r6304 | guillaume | 2015-01-14 12:58:54 +0000 (Wed, 14 Jan 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_factorial_design.m Doc: rewrite out-of-date help text about covariates. ------------------------------------------------------------------------ r6305 | karl | 2015-01-17 12:40:51 +0000 (Sat, 17 Jan 2015) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/spm_dcm_bma.m A /trunk/spm_dcm_bmr.m A /trunk/spm_dcm_bpa.m A /trunk/spm_dcm_fit.m D /trunk/spm_dcm_group.m A /trunk/spm_dcm_peb.m A /trunk/spm_dcm_peb_bmc.m M /trunk/spm_log_evidence_reduce.m A /trunk/tests/DEMO_BMR_PEB.m A /trunk/tests/DEMO_DCM_PEB.m M /trunk/toolbox/dcm_meeg/spm_api_erp.m A /trunk/toolbox/dcm_meeg/spm_dcm_bmr.m M /trunk/toolbox/dcm_meeg/spm_dcm_search_eeg.m routines added for Bayesian model comparison at the group level (Bayesian model reduction and empirical Bayes). ------------------------------------------------------------------------ r6306 | karl | 2015-01-18 20:50:38 +0000 (Sun, 18 Jan 2015) | 1 line Changed paths: A /trunk/spm_dcm_bmc.m M /trunk/spm_dcm_bmr.m D /trunk/spm_dcm_group_BMA.m A /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m A /trunk/spm_dcm_ppd.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m D /trunk/tests/ROBOT_DCM_LAPLACE.m M /trunk/toolbox/DEM/DEMO_SLR.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_Bayesian_Model_Reduction.m Further upgrades additions to empirical Bayes for group DCM studies ------------------------------------------------------------------------ r6307 | vladimir | 2015-01-20 10:45:56 +0000 (Tue, 20 Jan 2015) | 1 line Changed paths: M /trunk/spm_eeg_grandmean.m Speed improvements (thanks to Jeff) ------------------------------------------------------------------------ r6308 | vladimir | 2015-01-20 10:52:11 +0000 (Tue, 20 Jan 2015) | 1 line Changed paths: M /trunk/spm_eeg_grandmean.m Found a bug in the last fix ------------------------------------------------------------------------ r6309 | spm | 2015-01-20 21:01:36 +0000 (Tue, 20 Jan 2015) | 2 lines Changed paths: M /trunk/spm_dcm_bmc.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_bpa.m M /trunk/spm_dcm_fit.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_ppd.m M /trunk/spm_log_evidence_reduce.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m D /trunk/toolbox/dcm_meeg/spm_dcm_bmr.m Doc: cosmetics. ------------------------------------------------------------------------ r6310 | adeel | 2015-01-21 10:54:22 +0000 (Wed, 21 Jan 2015) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Making the diagnostics compatible with spectral DCM ------------------------------------------------------------------------ r6311 | vladimir | 2015-01-21 15:44:23 +0000 (Wed, 21 Jan 2015) | 1 line Changed paths: M /trunk/@meeg/badsamples.m Allow artefact events on multiple channels ------------------------------------------------------------------------ r6314 | guillaume | 2015-01-23 17:00:51 +0000 (Fri, 23 Jan 2015) | 2 lines Changed paths: M /trunk/@nifti/private/nifti2struc.m M /trunk/spm_getSPM.m M /trunk/spm_graph_ui.m M /trunk/spm_hdm_ui.m M /trunk/spm_list.m M /trunk/spm_regions.m Minor bug fixes. ------------------------------------------------------------------------ r6315 | guillaume | 2015-01-23 17:09:06 +0000 (Fri, 23 Jan 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg.m A /trunk/config/spm_cfg_parrec.m M /trunk/spm_ecat2nifti.m A /trunk/spm_parrec2nifti.m New feature: preliminary support for Philips PAR/REC files conversion into NifTI. ------------------------------------------------------------------------ r6316 | karl | 2015-01-25 11:49:37 +0000 (Sun, 25 Jan 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_fit.m M /trunk/spm_dcm_peb.m M /trunk/spm_dx.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m minor updates to model inversion routines ------------------------------------------------------------------------ r6317 | karl | 2015-01-25 15:15:40 +0000 (Sun, 25 Jan 2015) | 1 line Changed paths: A /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_fit.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m A /trunk/spm_dcm_peb_fit.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m A /trunk/tests/DEMO_GROUP_PEB.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m Further upgrade and additions to hierarchical modelling with DCM. In particular, the addition of a hierarchical inversion scheme for nonlinear parametric empirical Bayes. ------------------------------------------------------------------------ r6318 | vladimir | 2015-01-27 10:36:34 +0000 (Tue, 27 Jan 2015) | 1 line Changed paths: M /trunk/@meeg/path.m Bug fix (thanks to Mark) ------------------------------------------------------------------------ r6320 | vladimir | 2015-01-27 16:18:40 +0000 (Tue, 27 Jan 2015) | 1 line Changed paths: M /trunk/@meeg/indchantype.m M /trunk/config/spm_cfg_eeg_channel_selector.m M /trunk/config/spm_cfg_eeg_prepare.m M /trunk/spm_eeg_montage.m M /trunk/spm_eeg_prep_ui.m M /trunk/spm_eeg_review_callbacks.m Added new channel type for intralaminar electrodes ------------------------------------------------------------------------ r6321 | karl | 2015-01-28 14:40:44 +0000 (Wed, 28 Jan 2015) | 2 lines Changed paths: M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_ppd.m M /trunk/spm_dx.m M /trunk/spm_logdet.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/tests/DEMO_GROUP_PEB.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m Further upgrades to empirical Bayes for DCM; plus the addition of hierarchical inversion scheme to the DEM Toolbox n.b., a subtle that fundamental change to spm_dx.m that might have implications For other schemes.. ------------------------------------------------------------------------ r6322 | guillaume | 2015-02-02 12:56:16 +0000 (Mon, 02 Feb 2015) | 2 lines Changed paths: M /trunk/toolbox/mci/inference/spm_mci_mfx.m Bug fix: change required for the MATLAB Compiler. ------------------------------------------------------------------------ r6323 | guillaume | 2015-02-02 13:00:57 +0000 (Mon, 02 Feb 2015) | 3 lines Changed paths: M /trunk/toolbox/mci/inference/spm_mci_mfx.m Bug fix: for the MATLAB Compiler, it has to be: try, statement; catch, statement; end ------------------------------------------------------------------------ r6324 | guillaume | 2015-02-02 17:10:20 +0000 (Mon, 02 Feb 2015) | 2 lines Changed paths: M /trunk/config/spm_run_fmri_spec.m Enhancement: PM orthogonalisation options can be specified in the "Multiple Conditions" file. Thanks to Jakob H. ------------------------------------------------------------------------ r6325 | vladimir | 2015-02-03 10:54:03 +0000 (Tue, 03 Feb 2015) | 1 line Changed paths: M /trunk/spm_eeg_grandmean.m Bug fix (thanks to Alex) ------------------------------------------------------------------------ r6326 | karl | 2015-02-03 20:26:55 +0000 (Tue, 03 Feb 2015) | 1 line Changed paths: M /trunk/tests/DEMO_DCM_PEB.m M /trunk/toolbox/DEM/DEM_demo.fig minor changes to DCM PEB demo ------------------------------------------------------------------------ r6327 | karl | 2015-02-03 20:29:09 +0000 (Tue, 03 Feb 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig revert DEM GUI ------------------------------------------------------------------------ r6328 | john | 2015-02-05 11:54:45 +0000 (Thu, 05 Feb 2015) | 2 lines Changed paths: M /trunk/spm_maff8.m Minor bug fix, which should speed things up a bit. ------------------------------------------------------------------------ r6329 | karl | 2015-02-05 19:25:52 +0000 (Thu, 05 Feb 2015) | 1 line Changed paths: A /trunk/spm_MDP_da.m M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_bmr.m A /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_post_hoc.m M /trunk/spm_dcm_ppd.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/toolbox/DEM/spm_MDP_game.m M /trunk/toolbox/DEM/spm_MDP_game_KL.m Further upgrades to DCM Bayesian model reduction. ------------------------------------------------------------------------ r6330 | john | 2015-02-09 16:19:26 +0000 (Mon, 09 Feb 2015) | 5 lines Changed paths: M /trunk/spm_maff8.m M /trunk/spm_preproc8.m M /trunk/spm_smohist.m Various bug fixes: * Fixed the registration problem that occurred when using a non-parametric intensity representation. This problem was found by Ged. * The initial affine registration was not properly checking for convergence within its sub-iterations. The fix should have speeded things up a bit. * The histogram smoothing now has a more liberal stopping criterion, which should speed it up a bit. ------------------------------------------------------------------------ r6331 | guillaume | 2015-02-10 13:41:42 +0000 (Tue, 10 Feb 2015) | 3 lines Changed paths: M /trunk/spm_get_space.m Bug fix: check 3rd dimension of N.extras.mat. Thanks to Mike A. https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;8475f493.1502 ------------------------------------------------------------------------ r6332 | guillaume | 2015-02-10 19:09:00 +0000 (Tue, 10 Feb 2015) | 2 lines Changed paths: M /trunk/spm.m Enhancement: it seems that recent versions of MATLAB return a different value for MonitorPositions property. Thanks to Paul M. ------------------------------------------------------------------------ r6333 | guillaume | 2015-02-11 13:14:23 +0000 (Wed, 11 Feb 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_factorial_design.m M /trunk/spm_DesRep.m Enhancements: minor adjustments to display and user interaction. ------------------------------------------------------------------------ r6334 | john | 2015-02-11 17:11:53 +0000 (Wed, 11 Feb 2015) | 9 lines Changed paths: M /trunk/spm_preproc8.m * Bug fix (and possible re-introduction of new bugs) for converting gradients in template into gradients in the space of the downsampled image. * Adjusted the regularisation so that it is rescaled by the volume of each voxel in the downsampled image. I need to do more thinking to figure out whether this is really the right thing to do. Either way, with typical structural scans that are sampled every three voxels (ie one voxel in 27), it seems that the regularisation can be decreased by a factor of 10 without doing too much harm. ------------------------------------------------------------------------ r6335 | john | 2015-02-11 17:14:26 +0000 (Wed, 11 Feb 2015) | 2 lines Changed paths: M /trunk/spm_preproc8.m Forgot to disable all the debugging statements. ------------------------------------------------------------------------ r6336 | guillaume | 2015-02-11 18:06:41 +0000 (Wed, 11 Feb 2015) | 3 lines Changed paths: M /trunk/@nifti/private/read_hdr_raw.m Enhancement: only display a warning (instead of error) if a file cannot be closed (when accessed through NFS/SMB/AFP). https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;d636114f.1502 ------------------------------------------------------------------------ r6337 | guillaume | 2015-02-11 18:46:30 +0000 (Wed, 11 Feb 2015) | 2 lines Changed paths: M /trunk/config/spm_run_results.m M /trunk/spm_results_nidm.m M /trunk/spm_results_ui.m M /trunk/spm_write_filtered.m Refactoring: make spm_write_filtered silent. ------------------------------------------------------------------------ r6338 | spm | 2015-02-13 13:02:34 +0000 (Fri, 13 Feb 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/private/det2x2.m M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/connectivity/private/getsubfield.m M /trunk/external/fieldtrip/connectivity/private/inv2x2.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m 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/trunk/external/fieldtrip/private/unparcellate.m M /trunk/external/fieldtrip/private/validate_seg.m M /trunk/external/fieldtrip/private/volplot.m M /trunk/external/fieldtrip/private/volumeflip.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/private/wizard_base.m M /trunk/external/fieldtrip/spass2fieldtrip.m M /trunk/external/fieldtrip/specest/ft_specest_hilbert.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/external/fieldtrip/specest/ft_specest_tfr.m M /trunk/external/fieldtrip/specest/ft_specest_wavelet.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/getsubfield.m M /trunk/external/fieldtrip/src/det2x2.m M /trunk/external/fieldtrip/src/inv2x2.m M /trunk/external/fieldtrip/src/lmoutr.m M /trunk/external/fieldtrip/src/routlm.m M /trunk/external/fieldtrip/src/solid_angle.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff_itc.m M /trunk/external/fieldtrip/statfun/private/getsubfield.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_parcellation.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_datatype_volume.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_selectdata_new.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/ft_source2sparse.m M /trunk/external/fieldtrip/utilities/ft_warp_apply.m M /trunk/external/fieldtrip/utilities/ft_warp_optim.m M /trunk/external/fieldtrip/utilities/getsubfield.m M /trunk/external/fieldtrip/utilities/nearest.m D /trunk/external/fieldtrip/utilities/private/data2raw.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/determine_segmentationstyle.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m M /trunk/external/fieldtrip/utilities/private/lmoutr.m M /trunk/external/fieldtrip/utilities/private/loadvar.m M /trunk/external/fieldtrip/utilities/private/matlabversion.m A /trunk/external/fieldtrip/utilities/private/plinprojn.m M /trunk/external/fieldtrip/utilities/private/refine.m M /trunk/external/fieldtrip/utilities/private/rotate.m M /trunk/external/fieldtrip/utilities/private/unparcellate.m A /trunk/external/fieldtrip/utilities/private/volumeflip.m A /trunk/external/fieldtrip/utilities/private/volumepermute.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m update of external/fieldtrip to r10231 ------------------------------------------------------------------------ r6339 | guillaume | 2015-02-13 14:05:35 +0000 (Fri, 13 Feb 2015) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/spm_Menu.fig M /trunk/spm_Welcome.m Enhancement: add "Cross-frequency coupling" option in the M/EEG interface. ------------------------------------------------------------------------ r6340 | guillaume | 2015-02-16 12:25:56 +0000 (Mon, 16 Feb 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_imcalc.m M /trunk/spm_atlas.m M /trunk/spm_list.m M /trunk/spm_orthviews/spm_ov_display.m M /trunk/spm_results_ui.m M /trunk/spm_sample_vol.m M /trunk/spm_slice_vol.m Refactoring: labelling features moved from spm_atlas to spm_list and spm_results_ui. Doc: minor adjustments. ------------------------------------------------------------------------ r6341 | karl | 2015-02-18 14:46:43 +0000 (Wed, 18 Feb 2015) | 1 line Changed paths: M /trunk/spm_dcm_bma.m M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_fit.m A /trunk/spm_dcm_peb_full.m M /trunk/spm_dcm_ppd.m A /trunk/spm_find_pC.m M /trunk/spm_log_evidence_reduce.m M /trunk/spm_plot_ci.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/tests/DEMO_GROUP_PEB.m further – and near final – upgrades to empirical Bayes and Bayesian model reduction routines for DCM (and demos) ------------------------------------------------------------------------ r6342 | karl | 2015-02-18 15:22:07 +0000 (Wed, 18 Feb 2015) | 1 line Changed paths: M /trunk/spm_find_pC.m Minor change to help ------------------------------------------------------------------------ r6343 | spm | 2015-02-18 16:46:00 +0000 (Wed, 18 Feb 2015) | 2 lines Changed paths: M /trunk/spm_MDP_da.m M /trunk/spm_dcm_bmc.m M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_peb_full.m M /trunk/spm_dcm_ppd.m M /trunk/spm_find_pC.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/tests/DEMO_GROUP_PEB.m M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/tests/ROBOT_DCM_fMRI.m Doc: cosmetics, SVN properties and Stats toolbox. ------------------------------------------------------------------------ r6344 | guillaume | 2015-02-20 11:59:25 +0000 (Fri, 20 Feb 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_fmri_spec.m M /trunk/config/spm_run_fmri_spec.m Enhancement: add the option not to convolve conditions. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;cfc78c9f.1502 ------------------------------------------------------------------------ r6345 | guillaume | 2015-02-20 12:25:50 +0000 (Fri, 20 Feb 2015) | 3 lines Changed paths: M /trunk/@gifti/fieldnames.m M /trunk/@gifti/private/isintent.m M /trunk/@gifti/subsasgn.m M /trunk/@gifti/subsref.m Enhancement: adding field 'indices' for DataArray with intent NIFTI_INTENT_NODE_INDEX (Sparse Data Storage). Thanks to Nick O. ------------------------------------------------------------------------ r6346 | volkmar | 2015-02-24 11:01:50 +0000 (Tue, 24 Feb 2015) | 1 line Changed paths: M /trunk/spm_file.m Ensure that path/nam/ext... arguments are really char, not cellstr ------------------------------------------------------------------------ r6347 | guillaume | 2015-02-24 17:59:16 +0000 (Tue, 24 Feb 2015) | 3 lines Changed paths: M /trunk/@gifti/gifti.m M /trunk/@gifti/private/read_gifti_file.m Bug fix: follow-up of r6345 - GIfTI struct constructor and bug fix with ASCII encoding. Thanks to Nick O. ------------------------------------------------------------------------ r6348 | peter | 2015-02-25 13:34:21 +0000 (Wed, 25 Feb 2015) | 1 line Changed paths: M /trunk/spm_dcm_fit.m Fixed typo in return statement ------------------------------------------------------------------------ r6349 | guillaume | 2015-02-26 12:15:06 +0000 (Thu, 26 Feb 2015) | 6 lines Changed paths: M /trunk/spm_image.m M /trunk/spm_swarp.m Enhancements: * spm_swarp.m: handle voxel-to-world mapping if supplied https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;a39633fe.1502 * spm_image.m: allow call to spm_image('resetorient') ------------------------------------------------------------------------ r6350 | volkmar | 2015-02-26 12:56:26 +0000 (Thu, 26 Feb 2015) | 1 line Changed paths: M /trunk/spm_select.m Wrap frames into struct for GUI file selector - similar to '.*List.*' commands. ------------------------------------------------------------------------ r6351 | guillaume | 2015-02-26 16:37:18 +0000 (Thu, 26 Feb 2015) | 3 lines Changed paths: M /trunk/spm_DesRep.m Enhancement: handle size(I,2)>4 https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;a2e501e4.1502 ------------------------------------------------------------------------ r6352 | guillaume | 2015-02-27 18:30:35 +0000 (Fri, 27 Feb 2015) | 1 line Changed paths: A /trunk/spm_tests.m A /trunk/tests/test_spm_dctmtx.m A /trunk/tests/test_spm_filter.m A /trunk/tests/test_spm_trace.m A /trunk/tests/test_spm_z2p.m New feature: introducing Unit Tests. ------------------------------------------------------------------------ r6353 | karl | 2015-03-01 11:52:49 +0000 (Sun, 01 Mar 2015) | 1 line Changed paths: M /trunk/spm_ancova.m M /trunk/spm_dcm_bma.m M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_find_pC.m M /trunk/spm_lotka_volterra.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m A /trunk/tests/DEMO_DCM_PEB_REC.m M /trunk/toolbox/DEM/ADEM_eyeblink.m further upgrades to empirical Bayes for DCM ------------------------------------------------------------------------ r6354 | karl | 2015-03-01 14:13:17 +0000 (Sun, 01 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/tests/DEMO_DCM_PEB_REC.m Rationalised priors in relation to design matrix scaling spm_dcm_peb.m ------------------------------------------------------------------------ r6355 | volkmar | 2015-03-02 07:52:00 +0000 (Mon, 02 Mar 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Store jobs and config before throwing run error. ------------------------------------------------------------------------ r6356 | volkmar | 2015-03-02 07:52:01 +0000 (Mon, 02 Mar 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Fix diary file handling. ------------------------------------------------------------------------ r6357 | volkmar | 2015-03-02 07:52:02 +0000 (Mon, 02 Mar 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m Properly pass parameters for custom filters. ------------------------------------------------------------------------ r6358 | volkmar | 2015-03-03 14:30:14 +0000 (Tue, 03 Mar 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m Prettify command line listing of directories. ------------------------------------------------------------------------ r6359 | john | 2015-03-04 16:01:11 +0000 (Wed, 04 Mar 2015) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_essentials.m Can now recognise multi-frame dicom - but can not do anything with them. ------------------------------------------------------------------------ r6360 | spm | 2015-03-04 19:24:56 +0000 (Wed, 04 Mar 2015) | 2 lines Changed paths: M /trunk/spm_tests.m M /trunk/tests/DEMO_DCM_PEB.m M /trunk/tests/DEMO_DCM_PEB_REC.m M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/tests/ROBOT_DCM_fMRI.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp_dipfit.m Enhancements: adjust paths. ------------------------------------------------------------------------ r6361 | john | 2015-03-05 13:41:29 +0000 (Thu, 05 Mar 2015) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_essentials.m First prototype of multiframe DICOM conversion. ------------------------------------------------------------------------ r6362 | karl | 2015-03-05 20:08:48 +0000 (Thu, 05 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/tests/DEMO_DCM_PEB.m minor bug fixes to spm_dcm_peb routines ------------------------------------------------------------------------ r6363 | john | 2015-03-06 11:51:44 +0000 (Fri, 06 Mar 2015) | 3 lines Changed paths: M /trunk/spm_dicom_convert.m Tried to address potential problems that may occur with multiframe. Involves some scary code with permutations, which I hope I've got right. ------------------------------------------------------------------------ r6364 | spm | 2015-03-06 18:23:52 +0000 (Fri, 06 Mar 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/issubfield.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/issubfield.m M /trunk/external/fieldtrip/fileio/private/read_spmeeg_data.m M /trunk/external/fieldtrip/forward/ft_headmodel_dipoli.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/private/issubfield.m M /trunk/external/fieldtrip/ft_analysispipeline.m D /trunk/external/fieldtrip/ft_analysisprotocol.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/private/issubfield.m M /trunk/external/fieldtrip/inverse/private/mkfilt_eloreta_v2.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/private/issubfield.m M /trunk/external/fieldtrip/private/prepare_mesh_hexahedral.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/specest/private/issubfield.m M /trunk/external/fieldtrip/statfun/private/issubfield.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/issubfield.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m update of external/fieldtrip to r10268 ------------------------------------------------------------------------ r6365 | guillaume | 2015-03-06 18:59:55 +0000 (Fri, 06 Mar 2015) | 3 lines Changed paths: M /trunk/spm_preproc_run.m Bug fix: potential bug fix for: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;b58b4cdf.1503 ------------------------------------------------------------------------ r6366 | gareth | 2015-03-09 15:01:34 +0000 (Mon, 09 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_simulate.m updated ------------------------------------------------------------------------ r6367 | gareth | 2015-03-09 15:02:25 +0000 (Mon, 09 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_invertiter.m updated ------------------------------------------------------------------------ r6368 | gareth | 2015-03-09 15:31:53 +0000 (Mon, 09 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m added smooth prior to EBB code ------------------------------------------------------------------------ r6369 | vladimir | 2015-03-10 10:46:49 +0000 (Tue, 10 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_convert2images.m Made the code more robust to small numerical errors (thanks to Paul). ------------------------------------------------------------------------ r6370 | vladimir | 2015-03-10 16:29:21 +0000 (Tue, 10 Mar 2015) | 1 line Changed paths: M /trunk/@meeg/indchantype.m M /trunk/spm_eeg_montage.m M /trunk/spm_eeg_prep_ui.m M /trunk/spm_eeg_review_callbacks.m Added new SRC channel type ------------------------------------------------------------------------ r6371 | guillaume | 2015-03-10 20:19:46 +0000 (Tue, 10 Mar 2015) | 2 lines Changed paths: M /trunk/spm_orthviews.m Enhancement: images can now be displayed in a uipanel. ------------------------------------------------------------------------ r6372 | guillaume | 2015-03-10 21:37:21 +0000 (Tue, 10 Mar 2015) | 3 lines Changed paths: M /trunk/config/spm_run_fmri_spec.m Bug fix: rescale time modulators consistently. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;e063bbac.1503 ------------------------------------------------------------------------ r6373 | karl | 2015-03-11 17:10:54 +0000 (Wed, 11 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m A /trunk/spm_dcm_peb_rnd.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m re-randomisation added for DCM empirical Bayes routines ------------------------------------------------------------------------ r6374 | vladimir | 2015-03-12 10:15:18 +0000 (Thu, 12 Mar 2015) | 1 line Changed paths: M /trunk/@meeg/sensors.m M /trunk/toolbox/MEEGtools/spm_eeg_reref_eeg.m M /trunk/toolbox/MEEGtools/spm_eeg_split_conditions.m Bug fixes ------------------------------------------------------------------------ r6375 | john | 2015-03-12 11:37:10 +0000 (Thu, 12 Mar 2015) | 10 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_headers.m M /trunk/spm_maff8.m M /trunk/spm_preproc8.m * Fixed a glitch in spm_dicom_headers, where the warning() function was crashing. Also, it now reads all the data in for fields with wierd VRs. * More modifications to spm_dicom_convert, in thehope that it is a bit closer to dealing with multiframe. I'm not entirely certain about whether I've dealt with the 4th dimension well. * The CT data I've looked at seem to have values of -3024 for parts of the image where no data are present. I've therefore made a couple of changes to spm_preproc8 and spm_maff8 so that they ignore voxel values of -3024 (in addition to 0 and any non-finite values). ------------------------------------------------------------------------ r6376 | john | 2015-03-12 15:15:57 +0000 (Thu, 12 Mar 2015) | 7 lines Changed paths: M /trunk/config/spm_cfg_dicom.m M /trunk/config/spm_run_dicom.m M /trunk/spm_dicom_convert.m M /trunk/spm_preproc8.m * spm_preproc8.m - added another voxel value that sometimes corresponds to "unknown" in CT data. * config/spm_cfg_dicom.m - removed option to include patient name in output directory structure (for patient confidentiality). * spm_dicom_convert.m & config/spm_run_dicom.m - removed the annoying changes of directory. * spm_dicom_convert.m - for multiframe DICOM, have included the DICOM "Image Type" information in the descrip field of the NIfTI headers. ------------------------------------------------------------------------ r6377 | karl | 2015-03-13 20:16:44 +0000 (Fri, 13 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/spm_DEM_ButtonDownFcn.m spm_dcm_peb.m made mildly more conservative (in a classical sense) ------------------------------------------------------------------------ r6378 | karl | 2015-03-15 14:46:41 +0000 (Sun, 15 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_invFcdf.m M /trunk/spm_nlsi_GN.m A /trunk/tests/DEMO_BAYES_FACTORS.m M /trunk/toolbox/DEM/ADEM_eyeblink.m Minor updates and Bayes factor DEMO_BAYES_FACTORS.m added ------------------------------------------------------------------------ r6379 | guillaume | 2015-03-16 13:27:26 +0000 (Mon, 16 Mar 2015) | 17 lines Changed paths: M /trunk/spm_get_space.m M /trunk/spm_image.m Bug fix/enhancement: if sform_code and qform_code are 0 (N.mat_intent is ''), the orientation from NIfTI specs 'method 1' is copied into the sform part ('method 3'). This prevents the following situation to happen: >> N = nifti(P); >> N.mat ans = -3.1250 0 0 101.5625 0 3.1250 0 -101.5625 0 0 4.0000 -68.0000 0 0 0 1.0000 >> N.mat_intent = 'Aligned'; >> N.mat ans = 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ------------------------------------------------------------------------ r6380 | guillaume | 2015-03-17 16:13:50 +0000 (Tue, 17 Mar 2015) | 2 lines Changed paths: M /trunk/spm_mfx.m Enhancement: handle non-fMRI first-level models. ------------------------------------------------------------------------ r6381 | will | 2015-03-17 17:55:09 +0000 (Tue, 17 Mar 2015) | 1 line Changed paths: M /trunk/spm_BMS_gibbs.m Remove clipping of log model evidence table (fixes bug discovered by Jeremie Mattout) ------------------------------------------------------------------------ r6382 | holly | 2015-03-19 11:26:20 +0000 (Thu, 19 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m Corrected bug in badtrial trial removal ------------------------------------------------------------------------ r6383 | guillaume | 2015-03-19 17:20:41 +0000 (Thu, 19 Mar 2015) | 2 lines Changed paths: M /trunk/spm_progress_bar.m Enhancement: a faster, multibar progress bar. ------------------------------------------------------------------------ r6384 | vladimir | 2015-03-20 15:21:43 +0000 (Fri, 20 Mar 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/read_spmeeg_event.m minor fix (until the next FT update) ------------------------------------------------------------------------ r6385 | karl | 2015-03-21 12:06:22 +0000 (Sat, 21 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_peb_rnd.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m minor adjustment to DCM PEB routines ------------------------------------------------------------------------ r6386 | karl | 2015-03-21 12:08:03 +0000 (Sat, 21 Mar 2015) | 1 line Changed paths: M /trunk/tests/DEMO_BAYES_FACTORS.m Bayes factor demo added ------------------------------------------------------------------------ r6387 | karl | 2015-03-22 16:03:19 +0000 (Sun, 22 Mar 2015) | 1 line Changed paths: M /trunk/tests/DEMO_BAYES_FACTORS.m Upgrade to Bayes factor demonstration routine DEMO_BAYES_FACTORS.m ------------------------------------------------------------------------ r6388 | karl | 2015-03-22 20:27:00 +0000 (Sun, 22 Mar 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/tests/DEMO_DCM_PEB.m further adjustments to parametric empirical Bayes for DCM ------------------------------------------------------------------------ r6389 | gareth | 2015-03-25 11:15:53 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_simulate.m Now creates a prior compatible with new inversion routines ------------------------------------------------------------------------ r6390 | gareth | 2015-03-25 11:18:35 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m A /trunk/config/spm_cfg_eeg_inv_optimize.m A /trunk/config/spm_cfg_eeg_inv_prepro.m A /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/config/spm_cfg_eeg_inv_simulate.m A /trunk/spm_eeg_assemble_priors.m A /trunk/spm_eeg_invert_EBoptimise.m added new modular code for empirical Bayes inversion ------------------------------------------------------------------------ r6391 | vladimir | 2015-03-25 11:37:13 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_lgainmat.m Do not rescale lead-fields if the scaling factor is less than 100. ------------------------------------------------------------------------ r6392 | vladimir | 2015-03-25 11:47:20 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_lgainmat.m Fix for the fix ------------------------------------------------------------------------ r6393 | vladimir | 2015-03-25 15:22:16 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/spm_eeg_lgainmat.m Removed the second rescaling ------------------------------------------------------------------------ r6394 | gareth | 2015-03-25 17:09:10 +0000 (Wed, 25 Mar 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/spm_eeg_simulate.m tidied up new modular functions ------------------------------------------------------------------------ r6395 | adeel | 2015-03-26 15:05:04 +0000 (Thu, 26 Mar 2015) | 1 line Changed paths: M /trunk/toolbox/spectral/spm_csd2ccf.m Bug fix for TR < 1s ------------------------------------------------------------------------ r6396 | guillaume | 2015-04-01 12:49:01 +0100 (Wed, 01 Apr 2015) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_figure.m M /trunk/spm_image.m Bug fix: use gcbo instead of gco. ------------------------------------------------------------------------ r6397 | guillaume | 2015-04-02 16:07:46 +0100 (Thu, 02 Apr 2015) | 2 lines Changed paths: M /trunk/@slover/private/mars_struct.m M /trunk/spm.m M /trunk/spm_Menu.fig M /trunk/spm_input.m M /trunk/spm_results_ui.m Enhancements: code cleanup. ------------------------------------------------------------------------ r6398 | vladimir | 2015-04-02 16:44:43 +0100 (Thu, 02 Apr 2015) | 1 line Changed paths: M /trunk/spm_eeg_montage.m Minor fix (thanks to Adam) ------------------------------------------------------------------------ r6399 | guillaume | 2015-04-07 17:05:10 +0100 (Tue, 07 Apr 2015) | 2 lines Changed paths: M /trunk/spm_dcm_specify_ui.m Enhancement: allow dissimilar xY structures (different fields order or different number of fields) in VOI.mat files. ------------------------------------------------------------------------ r6400 | guillaume | 2015-04-07 19:19:20 +0100 (Tue, 07 Apr 2015) | 2 lines Changed paths: M /trunk/spm_dcm_voi.m Enhancement: allow dissimilar xY structures in VOI.mat files (see r6399). ------------------------------------------------------------------------ r6401 | guillaume | 2015-04-09 18:21:33 +0100 (Thu, 09 Apr 2015) | 2 lines Changed paths: M /trunk/@gifti/export.m M /trunk/@gifti/private/dunzip.m M /trunk/@gifti/private/dzip.m A /trunk/@gifti/private/miniz.c A /trunk/@gifti/private/zstream.c Enhancement: compress/decompress gzipped stream of bytes using C-library miniz. ------------------------------------------------------------------------ r6402 | guillaume | 2015-04-09 19:11:06 +0100 (Thu, 09 Apr 2015) | 2 lines Changed paths: A /trunk/@gifti/private/Makefile M /trunk/src/Makefile Enhancement: update Makefile for r6401. ------------------------------------------------------------------------ r6403 | spm | 2015-04-13 13:42:03 +0100 (Mon, 13 Apr 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m A /trunk/external/fieldtrip/fileio/private/jaga16_packet.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_stats.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m A /trunk/external/fieldtrip/private/select3d.m M /trunk/external/fieldtrip/private/splint.m M /trunk/external/fieldtrip/specest/ft_specest_hilbert.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/external/fieldtrip/specest/ft_specest_tfr.m M /trunk/external/fieldtrip/specest/ft_specest_wavelet.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_freq.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m update of external/fieldtrip to r6402 ------------------------------------------------------------------------ r6404 | guillaume | 2015-04-13 15:29:53 +0100 (Mon, 13 Apr 2015) | 2 lines Changed paths: M /trunk/@gifti/Contents.m D /trunk/@gifti/private/dunzip.m D /trunk/@gifti/private/dzip.m M /trunk/@gifti/private/read_gifti_file.m A /trunk/@gifti/private/zstream.m M /trunk/@gifti/save.m Refactoring: use zstream to compress/decompress a stream of bytes. ------------------------------------------------------------------------ r6405 | guillaume | 2015-04-14 16:13:02 +0100 (Tue, 14 Apr 2015) | 2 lines Changed paths: M /trunk/spm_eeg_inv_image_display.m M /trunk/spm_eeg_review_switchDisplay.m Bug fix: display exported mesh data. ------------------------------------------------------------------------ r6406 | guillaume | 2015-04-14 16:26:39 +0100 (Tue, 14 Apr 2015) | 2 lines Changed paths: M /trunk/spm_eeg_history.m Bug fix: spm_eeg_merge input is a cell array of meeg objects. ------------------------------------------------------------------------ r6407 | guillaume | 2015-04-15 15:36:14 +0100 (Wed, 15 Apr 2015) | 2 lines Changed paths: M /trunk/spm_eeg_epochs.m Doc: S.eventpadding unit is seconds. Thanks to Mate A. ------------------------------------------------------------------------ r6408 | peter | 2015-04-16 15:58:47 +0100 (Thu, 16 Apr 2015) | 1 line Changed paths: M /trunk/spm_dcm_bma.m Changed spm_dcm_bma.m to read default number of samples (1000) from Nsamp ------------------------------------------------------------------------ r6409 | guillaume | 2015-04-16 17:19:38 +0100 (Thu, 16 Apr 2015) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_atlas.m M /trunk/spm_browser.m M /trunk/spm_cat_struct.m M /trunk/spm_figure.m M /trunk/spm_mip_ui.m Enhancement: minor compatibility updates. ------------------------------------------------------------------------ r6410 | guillaume | 2015-04-17 16:52:19 +0100 (Fri, 17 Apr 2015) | 2 lines Changed paths: M /trunk/spm_nlsi_GN.m Enhancement: remove call to keyboard. ------------------------------------------------------------------------ r6411 | gareth | 2015-04-20 08:05:14 +0100 (Mon, 20 Apr 2015) | 1 line Changed paths: M /trunk/spm_eeg_inv_Mesh2Voxels.m Bug fix by Jamea Bonaito when writing out conditions ------------------------------------------------------------------------ r6412 | vladimir | 2015-04-20 11:14:50 +0100 (Mon, 20 Apr 2015) | 1 line Changed paths: M /trunk/spm_eeg_inv_Mesh2Voxels.m Reverting Gareth's fix as it was redundant after my fix in v6266 ------------------------------------------------------------------------ r6415 | guillaume | 2015-04-20 16:27:42 +0100 (Mon, 20 Apr 2015) | 2 lines Changed paths: M /trunk/@gifti/private/zstream.c Enhancement: use memcpy. ------------------------------------------------------------------------ r6416 | guillaume | 2015-04-21 16:34:10 +0100 (Tue, 21 Apr 2015) | 3 lines Changed paths: M /trunk/@gifti/save.m M /trunk/@gifti/subsasgn.m M /trunk/config/spm_make_standalone.m M /trunk/man/biblio/methods_group.bib M /trunk/man/multi/multi.tex M /trunk/spm_changepath.m M /trunk/spm_dctmtx.m M /trunk/spm_dicom_text_to_dict.m M /trunk/spm_dwtmtx.m M /trunk/spm_filter.m M /trunk/spm_mip_ui.m M /trunk/spm_orthviews/spm_ov_save.m M /trunk/spm_results_ui.m M /trunk/spm_summarise.m M /trunk/spm_tests.m M /trunk/spm_uc_Bonf.m M /trunk/toolbox/DEM/spm_DEM_M.m M /trunk/toolbox/FieldMap/FieldMap.m Enhancement: Enable 'save' option in Results section for mesh-based analyses. Minor adjustments otherwise. ------------------------------------------------------------------------ r6417 | guillaume | 2015-04-21 17:03:44 +0100 (Tue, 21 Apr 2015) | 2 lines Changed paths: M /trunk/@gifti/private/zstream.c M /trunk/@gifti/private/zstream.m Doc: remove compilation warning. ------------------------------------------------------------------------ r6418 | sungho | 2015-04-23 09:40:08 +0100 (Thu, 23 Apr 2015) | 1 line Changed paths: A /trunk/toolbox/dcm_fnirs A /trunk/toolbox/dcm_fnirs/mmclab A /trunk/toolbox/dcm_fnirs/mmclab/estimate_greens_mmclab.m A /trunk/toolbox/dcm_fnirs/sample_data A /trunk/toolbox/dcm_fnirs/sample_data/est_green.mat A /trunk/toolbox/dcm_fnirs/sample_data/exp_info.mat A /trunk/toolbox/dcm_fnirs/sample_data/optical_density_ME.mat A /trunk/toolbox/dcm_fnirs/sample_data/optical_density_MI.mat A /trunk/toolbox/dcm_fnirs/sample_data/pos_nirs.mat A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_priors.m A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_specify.m A /trunk/toolbox/dcm_fnirs/spm_fnirs_convert.m A /trunk/toolbox/dcm_fnirs/spm_fnirs_sensitivity.m A /trunk/toolbox/dcm_fnirs/spm_fnirs_wavg.m A /trunk/toolbox/dcm_fnirs/spm_fx_fnirs.m A /trunk/toolbox/dcm_fnirs/spm_gx_fnirs.m A /trunk/toolbox/dcm_fnirs/spm_gx_state_fnirs.m ------------------------------------------------------------------------ r6419 | sungho | 2015-04-23 17:11:34 +0100 (Thu, 23 Apr 2015) | 1 line Changed paths: M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_convert.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_sensitivity.m M /trunk/toolbox/dcm_fnirs/spm_gx_fnirs.m ------------------------------------------------------------------------ r6420 | spm | 2015-04-23 17:41:31 +0100 (Thu, 23 Apr 2015) | 2 lines Changed paths: D /trunk/toolbox/dcm_fnirs/mmclab D /trunk/toolbox/dcm_fnirs/sample_data Refactoring: remove example dataset from repository. ------------------------------------------------------------------------ r6421 | john | 2015-04-23 17:54:25 +0100 (Thu, 23 Apr 2015) | 3 lines Changed paths: M /trunk/spm_maff8.m M /trunk/spm_preproc8.m * spm_maff8: Now does a better Armijo line search (I hope). * spm_preproc: Fixed the bias correction for multi-spectral segmentation. The gradients now properly account for the fact that data may be multi-spectral. ------------------------------------------------------------------------ r6422 | spm | 2015-04-23 17:55:52 +0100 (Thu, 23 Apr 2015) | 2 lines Changed paths: M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_priors.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_specify.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_convert.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_sensitivity.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_wavg.m M /trunk/toolbox/dcm_fnirs/spm_fx_fnirs.m M /trunk/toolbox/dcm_fnirs/spm_gx_fnirs.m M /trunk/toolbox/dcm_fnirs/spm_gx_state_fnirs.m Doc: minor adjustments. ------------------------------------------------------------------------ r6423 | guillaume | 2015-04-23 19:38:01 +0100 (Thu, 23 Apr 2015) | 2 lines Changed paths: M /trunk/spm_jobman.m Doc: display more information if a toolbox overrides spm_select. ------------------------------------------------------------------------ r6424 | gareth | 2015-04-24 15:33:33 +0100 (Fri, 24 Apr 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_post.m M /trunk/config/spm_cfg_eeg_inv_prepro.m M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/spm_eeg_assemble_priors.m M /trunk/spm_eeg_invert_EBoptimise.m A /trunk/spm_eeg_invert_prepro.m A /trunk/spm_eeg_invert_setuppatches.m M /trunk/spm_eeg_simulate.m updates to modular inversion routines ------------------------------------------------------------------------ r6425 | guillaume | 2015-04-29 19:24:51 +0100 (Wed, 29 Apr 2015) | 1 line Changed paths: M /trunk/spm_image.m M /trunk/spm_list.m M /trunk/spm_provenance.m M /trunk/spm_results_nidm.m Work in progress for NIDM 1.0.0 export. ------------------------------------------------------------------------ r6426 | peter | 2015-04-30 16:11:12 +0100 (Thu, 30 Apr 2015) | 1 line Changed paths: M /trunk/man/dcm/dcm.tex M /trunk/man/manual.tex Updated DCM for fMRI chapter to match SPM12 GUI. ------------------------------------------------------------------------ r6427 | karl | 2015-05-05 16:42:35 +0100 (Tue, 05 May 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_delay.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_peb_full.m M /trunk/spm_dcm_ppd.m M /trunk/spm_fieldindices.m M /trunk/spm_find_pC.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB.m A /trunk/tests/DEMO_DCM_PEB_FIT.m M /trunk/tests/DEMO_DCM_PEB_REC.m M /trunk/tests/DEMO_GROUP_PEB.m M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_fx_erp.m M /trunk/toolbox/dcm_meeg/spm_gen_erp.m Upgrade to group DCM inversion with PEB routines. ------------------------------------------------------------------------ r6428 | guillaume | 2015-05-06 15:09:04 +0100 (Wed, 06 May 2015) | 3 lines Changed paths: M /trunk/@file_array/private/init.c M /trunk/src/spm_existfile.c Enhancement: compilation with Clang - thanks to Matthew B. See https://developer.apple.com/library/mac/documentation/Darwin/Reference/ManPages/man2/stat64.2.html ------------------------------------------------------------------------ r6429 | gareth | 2015-05-06 16:56:23 +0100 (Wed, 06 May 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m bug fix in spm_cfg_eeg_inv_optimize.m ------------------------------------------------------------------------ r6430 | spm | 2015-05-07 11:59:33 +0100 (Thu, 07 May 2015) | 1 line Changed paths: D /trunk/external/fieldtrip/fileio/@uint64/compile.m A /trunk/external/fieldtrip/fileio/@uint64/compile_uint64.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_senslabel.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m A /trunk/external/fieldtrip/fileio/private/read_ah5_data.m A /trunk/external/fieldtrip/fileio/private/read_ah5_markers.m M /trunk/external/fieldtrip/fileio/private/read_buffer_offline_header.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_senslabel.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_compile_mex.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_definetrial.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_senslabel.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/ft_uilayout.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_senslabel.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/private/select_channel_list.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m M /trunk/external/fieldtrip/trialfun/private/select_channel_list.m M /trunk/external/fieldtrip/utilities/ft_datatype_freq.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m update of external/fieldtrip to r10383 ------------------------------------------------------------------------ r6431 | john | 2015-05-08 19:24:28 +0100 (Fri, 08 May 2015) | 13 lines Changed paths: A /trunk/spm_dicom_header.m M /trunk/spm_dicom_headers.m M /trunk/spm_preproc8.m M /trunk/spm_smohist.m * spm_dicom_headers has been split into two functions in order to make life easier and to allow greater flexibility. * Changes to spm_preproc8 that include: - Work with log-probabilities as much as possible to prevent over/underflow for large multi-spectral datasets eg exp(f1)/(exp(f1)+exp(f2)) is now computed as exp(f1-m)/(exp(f1-m)+exp(f2-m)), where m is the largest of all the log-probabilities. - Fixed the 1st derivatives of the objective function w.r.t. changes in the bias field. This leads to better multi-spectral results. - Re-incorporated the line search to ensure that changes to the bias actually improve the likelihood (needed for the non-parametric version). - Now keep the regularisation (smoothness prior) of the non-parametric intensity distribution representation constant. - Included priors on the covariances to prevent singularities when dealing with lagre multi-spectral datasets. ------------------------------------------------------------------------ r6432 | karl | 2015-05-09 13:58:12 +0100 (Sat, 09 May 2015) | 1 line Changed paths: M /trunk/spm_dcm_estimate.m M /trunk/spm_fx_fmri.m M /trunk/spm_nlsi_GN.m M /trunk/spm_nlsi_N.m M /trunk/toolbox/DEM/DEM_demo.fig A /trunk/toolbox/DEM/DEM_spatial_deconvolution.m M /trunk/toolbox/dcm_meeg/spm_api_erp.fig spatiotemporal deconvolution demo added and minor robustness improvements ------------------------------------------------------------------------ r6433 | karl | 2015-05-09 14:02:12 +0100 (Sat, 09 May 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.m ------------------------------------------------------------------------ r6434 | vladimir | 2015-05-10 21:16:28 +0100 (Sun, 10 May 2015) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_csd_data.m minor bug fix (thanks to Christian) ------------------------------------------------------------------------ r6435 | guillaume | 2015-05-14 10:59:54 +0100 (Thu, 14 May 2015) | 1 line Changed paths: M /trunk/spm_coreg.m Enhancement: disable TeX interpreter in axis label for coregistration display. ------------------------------------------------------------------------ r6436 | guillaume | 2015-05-14 11:05:27 +0100 (Thu, 14 May 2015) | 1 line Changed paths: M /trunk/spm_regions.m Enhancement: VOI time series extraction for surface-based data. ------------------------------------------------------------------------ r6437 | vladimir | 2015-05-14 13:27:21 +0100 (Thu, 14 May 2015) | 1 line Changed paths: M /trunk/@meeg/link.m M /trunk/@meeg/sconfounds.m M /trunk/config/spm_cfg_eeg_spatial_confounds.m M /trunk/spm_eeg_crop.m M /trunk/spm_eeg_prep.m M /trunk/spm_eeg_prep_ui.m M /trunk/spm_eeg_review_callbacks.m M /trunk/spm_eeg_spatial_confounds.m Fixes for the bugs uncovered during the SPM course ------------------------------------------------------------------------ r6438 | vladimir | 2015-05-18 12:50:42 +0100 (Mon, 18 May 2015) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_dipole_waveforms.m Bug fix (thanks to Paul) ------------------------------------------------------------------------ r6439 | guillaume | 2015-05-19 16:35:34 +0100 (Tue, 19 May 2015) | 1 line Changed paths: M /trunk/spm_results_nidm.m Bug fix: haemodynamic response basis set and OLS/GLS in NIDM Results export. ------------------------------------------------------------------------ r6440 | guillaume | 2015-05-19 17:54:28 +0100 (Tue, 19 May 2015) | 2 lines Changed paths: M /trunk/spm_atlas.m Bug fix: fix compatibility issue introduced in r6340. ------------------------------------------------------------------------ r6441 | john | 2015-05-19 19:18:25 +0100 (Tue, 19 May 2015) | 6 lines Changed paths: M /trunk/man/dartelguide/dartelguide.tex M /trunk/spm_dicom_dict.txt * Updated the Dartel Guide chapter in response to an email from William Baare. The procedures used in the deformations utility needed their documentation updating. * Included a couple of extra tags in the dicom dictionary. The plan will be to have an option to only save fields that are descried in the dictionary. Some of the Private_*_* fields from Siemens seem to be used, but they were not previously included. ------------------------------------------------------------------------ r6442 | will | 2015-05-21 10:13:44 +0100 (Thu, 21 May 2015) | 1 line Changed paths: M /trunk/config/spm_run_dcm_bms.m M /trunk/spm_BMS.m A /trunk/spm_BMS_bor.m Fixed bug in spm_BMS.m due to incorrect truncation of extreme log evidence values ------------------------------------------------------------------------ r6443 | volkmar | 2015-05-21 12:04:30 +0100 (Thu, 21 May 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m Only do filtering if there is anything to filter. ------------------------------------------------------------------------ r6444 | guillaume | 2015-05-21 12:15:48 +0100 (Thu, 21 May 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_inv_prepro.m M /trunk/spm_BMS_bor.m M /trunk/spm_check_installation.m M /trunk/spm_eeg_invert_prepro.m M /trunk/spm_select.m Doc: directory listing option for spm_select.m & SVN properties. ------------------------------------------------------------------------ r6445 | guillaume | 2015-05-21 18:38:59 +0100 (Thu, 21 May 2015) | 2 lines Changed paths: M /trunk/spm_mip_ui.m Enhancement: add option to extract raw data y in addition to betas. ------------------------------------------------------------------------ r6446 | vladimir | 2015-05-22 15:10:56 +0100 (Fri, 22 May 2015) | 1 line Changed paths: M /trunk/@meeg/indchantype.m Minor fix ------------------------------------------------------------------------ r6447 | spm | 2015-05-22 15:40:22 +0100 (Fri, 22 May 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/hasyokogawa.m A /trunk/external/fieldtrip/fileio/private/read_ahdf5_hdr.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/hasyokogawa.m M /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m A /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_statistics_stats.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/hasyokogawa.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m A /trunk/external/fieldtrip/private/cornerpoints.m M /trunk/external/fieldtrip/private/findcluster.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m M /trunk/external/fieldtrip/private/unparcellate.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/unparcellate.m update of external/fieldtrip to r10419 ------------------------------------------------------------------------ r6448 | guillaume | 2015-05-22 19:31:04 +0100 (Fri, 22 May 2015) | 2 lines Changed paths: M /trunk/spm_atlas.m M /trunk/spm_summarise.m Enhancements: minor adjustments for easier scripting. ------------------------------------------------------------------------ r6449 | karl | 2015-05-24 15:26:59 +0100 (Sun, 24 May 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_ppd.m A /trunk/spm_dcm_reduce.m M /trunk/spm_log_evidence_reduce.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/DEMO_DCM_PEB_FIT.m Further refinements to empirical Bayes for DCM ------------------------------------------------------------------------ r6450 | karl | 2015-05-24 15:28:03 +0100 (Sun, 24 May 2015) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_demo_MDP_habits.m A /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_game.m addition of state action policies to MDP formulations of active inference ------------------------------------------------------------------------ r6451 | karl | 2015-05-26 10:26:03 +0100 (Tue, 26 May 2015) | 1 line Changed paths: M /trunk/spm_MDP_da.m A /trunk/toolbox/DEM/spm_MDP_DP.m M /trunk/toolbox/DEM/spm_MDP_VB.m Dynamic programming added to NDP schemes in DEM toolbox/DEM/spm_MDP_DP.m ------------------------------------------------------------------------ r6452 | volkmar | 2015-05-26 13:44:55 +0100 (Tue, 26 May 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Read more fields from DICOM header for later spectroscopy conversion. ------------------------------------------------------------------------ r6453 | volkmar | 2015-05-26 13:45:02 +0100 (Tue, 26 May 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Search for protocol data in correct places. ------------------------------------------------------------------------ r6454 | volkmar | 2015-05-26 13:45:03 +0100 (Tue, 26 May 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Convert both SIEMENS version Axx and Bxx spectroscopy data. ------------------------------------------------------------------------ r6455 | volkmar | 2015-05-26 13:45:05 +0100 (Tue, 26 May 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_dict.mat M /trunk/spm_dicom_dict.txt M /trunk/spm_dicom_header.m Use names instead of generic DICOM tag numbers for undocumented SIEMENS spectroscopy header information. ------------------------------------------------------------------------ r6456 | john | 2015-05-26 16:24:36 +0100 (Tue, 26 May 2015) | 3 lines Changed paths: M /trunk/spm_uw_estimate.m Fix for problem reported by Nick P Lao-Kaim. The batch file had "Re-estimate movement params" set to "No", which meant that ds.p0 was not being set. Instead, it was setting the value of an unused field (ds.ep). ------------------------------------------------------------------------ r6457 | peter | 2015-05-27 15:57:06 +0100 (Wed, 27 May 2015) | 1 line Changed paths: A /trunk/spm_post_concatenate.m Script to adjust SPM.mat files with concatenated sessions ------------------------------------------------------------------------ r6458 | spm | 2015-05-27 17:22:09 +0100 (Wed, 27 May 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/spm_dcm_reduce.m M /trunk/spm_dcm_review.m M /trunk/spm_eeg_assemble_priors.m M /trunk/spm_eeg_invert_EBoptimise.m M /trunk/spm_eeg_invert_setuppatches.m A /trunk/spm_fmri_concatenate.m (from /trunk/spm_post_concatenate.m:6457) D /trunk/spm_post_concatenate.m M /trunk/toolbox/FieldMap/tbx_cfg_fieldmap.m Doc: Tabs, SVN properties and help section. ------------------------------------------------------------------------ r6459 | peter | 2015-05-27 17:54:53 +0100 (Wed, 27 May 2015) | 1 line Changed paths: M /trunk/spm_fmri_concatenate.m Minor function name correction ------------------------------------------------------------------------ r6460 | volkmar | 2015-05-28 09:30:28 +0100 (Thu, 28 May 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_confgui/cfg_confgui.m M /trunk/matlabbatch/cfg_job.m M /trunk/matlabbatch/cfg_util.m M /trunk/matlabbatch/hgsave_pre2008a.m M /trunk/matlabbatch/private/cfg_mlbatch_defaults.m Catch failure in fopen(...,'w...') ------------------------------------------------------------------------ r6461 | volkmar | 2015-05-28 09:30:32 +0100 (Thu, 28 May 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m M /trunk/matlabbatch/private/cfg_mlbatch_defaults.m Return with explanatory error message instead of crash if list of files is not a column cellstr. ------------------------------------------------------------------------ r6462 | volkmar | 2015-05-29 12:00:11 +0100 (Fri, 29 May 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m Compatibility: Do not use ismatrix. ------------------------------------------------------------------------ r6463 | volkmar | 2015-05-29 15:10:15 +0100 (Fri, 29 May 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_getfile.m M /trunk/matlabbatch/cfg_ui.m M /trunk/matlabbatch/private/cfg_mlbatch_defaults.m M /trunk/matlabbatch/private/inputdlg.m M /trunk/matlabbatch/private/listdlg.m Use cellstr list of param/value pairs instead of struct as default font parameter format. ------------------------------------------------------------------------ r6464 | guillaume | 2015-05-29 18:41:45 +0100 (Fri, 29 May 2015) | 2 lines Changed paths: M /trunk/help/index.html M /trunk/man/biblio/methods_group.bib M /trunk/man/manual.pdf Doc: new compilation of the manual. ------------------------------------------------------------------------ r6465 | spm | 2015-06-01 12:53:24 +0100 (Mon, 01 Jun 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_statistics_analytic.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/utilities/ft_version.m update of external/fieldtrip to r10432 ------------------------------------------------------------------------ r6466 | karl | 2015-06-03 13:42:14 +0100 (Wed, 03 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb_bmc.m M /trunk/tests/DEMO_BAYES_FACTORS.m Minor upgrade to bays factors demo routine ------------------------------------------------------------------------ r6467 | guillaume | 2015-06-03 15:47:41 +0100 (Wed, 03 Jun 2015) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_getfile.m Bug fix: error on Windows. ------------------------------------------------------------------------ r6468 | guillaume | 2015-06-03 17:22:52 +0100 (Wed, 03 Jun 2015) | 1 line Changed paths: M /trunk/spm_results_nidm.m Enhancement: update of NIDM-Results export to 1.1.0 ------------------------------------------------------------------------ r6469 | guillaume | 2015-06-03 17:46:08 +0100 (Wed, 03 Jun 2015) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.1. ------------------------------------------------------------------------ r6471 | karl | 2015-06-03 22:08:41 +0100 (Wed, 03 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_rnd.m M /trunk/tests/DEMO_BMR_PEB.m minor revisions to parametric empirical Bayes for DCM ------------------------------------------------------------------------ r6472 | guillaume | 2015-06-04 15:04:47 +0100 (Thu, 04 Jun 2015) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Bug fix: missing type in NIDM-Results export. Thanks to Camille M. ------------------------------------------------------------------------ r6473 | karl | 2015-06-04 20:05:05 +0100 (Thu, 04 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmc_peb.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_rnd.m A /trunk/spm_dcm_peb_rnd_search.m M /trunk/spm_dcm_ppd.m M /trunk/tests/DEMO_BAYES_FACTORS.m Further upgrades to PEB for DCM routines ------------------------------------------------------------------------ r6474 | karl | 2015-06-06 11:41:55 +0100 (Sat, 06 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_rnd.m M /trunk/spm_dcm_peb_rnd_search.m minor robustness improvements to empirical Bayes for DCM ------------------------------------------------------------------------ r6475 | karl | 2015-06-06 11:44:20 +0100 (Sat, 06 Jun 2015) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_erp_L.m Minor upgrade to allow for common sources in DCM for EEG ------------------------------------------------------------------------ r6476 | karl | 2015-06-08 10:37:01 +0100 (Mon, 08 Jun 2015) | 1 line Changed paths: A /trunk/tests/DEMO_Lindley_paradox.m Further demonstration routine added to illustrate the Lindley paradox ------------------------------------------------------------------------ r6477 | gareth | 2015-06-09 14:54:35 +0100 (Tue, 09 Jun 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_priors.m update to allow EBB and sparseEBB ------------------------------------------------------------------------ r6478 | gareth | 2015-06-10 14:27:13 +0100 (Wed, 10 Jun 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m improved optimization logic, fixed bug with Ic ------------------------------------------------------------------------ r6479 | gareth | 2015-06-10 14:44:14 +0100 (Wed, 10 Jun 2015) | 1 line Changed paths: M /trunk/spm_eeg_assemble_priors.m M /trunk/spm_eeg_invert_EBoptimise.m M /trunk/spm_eeg_invert_prepro.m bug fixes in modular inversion routines ------------------------------------------------------------------------ r6480 | guillaume | 2015-06-13 02:08:30 +0100 (Sat, 13 Jun 2015) | 1 line Changed paths: M /trunk/@xmltree/Contents.m M /trunk/@xmltree/convert.m M /trunk/@xmltree/copy.m M /trunk/@xmltree/editor.m M /trunk/@xmltree/move.m M /trunk/@xmltree/private/xml_findstr.c M /trunk/@xmltree/private/xml_parser.m M /trunk/@xmltree/view.m Enhancement: compatibility with R2015b MATLAB execution engine. ------------------------------------------------------------------------ r6481 | karl | 2015-06-16 18:01:47 +0100 (Tue, 16 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_fieldindices.m M /trunk/spm_find_pC.m M /trunk/spm_funcheck.m M /trunk/spm_log_evidence_reduce.m M /trunk/spm_nlsi_GN.m M /trunk/spm_rand_power_law.m M /trunk/tests/DEMO_Lindley_paradox.m M /trunk/toolbox/Neural_Models/Neural_demo.fig M /trunk/toolbox/Neural_Models/Neural_demo.m A /trunk/toolbox/Neural_Models/spm_erp2csd_demo.m M /trunk/toolbox/dcm_meeg/spm_csd_mtf.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd_data.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/spectral/spm_dtf2gew.m M /trunk/toolbox/spectral/spm_mar2ccf.m Upgrade to DCM for CSD routines and addition of a PEB demo to the Neural demo toolbox ------------------------------------------------------------------------ r6482 | peter | 2015-06-17 03:57:05 +0100 (Wed, 17 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m Fixed an issue where posterior probabilities on group effects were being binarized ------------------------------------------------------------------------ r6483 | karl | 2015-06-21 22:14:34 +0100 (Sun, 21 Jun 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_DCM_LAP.m Minor upgrade to LAP demo ------------------------------------------------------------------------ r6484 | spm | 2015-06-24 15:32:46 +0100 (Wed, 24 Jun 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/fixname.m A /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m D /trunk/external/fieldtrip/connectivity/private/warning_once.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/fixsampleinfo.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m A /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m A /trunk/external/fieldtrip/fileio/private/ft_warning.m D /trunk/external/fieldtrip/fileio/private/matlabversion.m M /trunk/external/fieldtrip/fileio/private/mne2grad.m M /trunk/external/fieldtrip/fileio/private/mxSerialize.m M /trunk/external/fieldtrip/fileio/private/read_nifti2_hdr.m M /trunk/external/fieldtrip/fileio/private/read_trigger.m D /trunk/external/fieldtrip/fileio/private/warning_once.m M /trunk/external/fieldtrip/forward/private/fixname.m A /trunk/external/fieldtrip/forward/private/ft_warning.m D /trunk/external/fieldtrip/forward/private/warning_once.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m D /trunk/external/fieldtrip/ft_channelcombination.m D /trunk/external/fieldtrip/ft_channelselection.m D /trunk/external/fieldtrip/ft_compile_mex.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_defaults.m D /trunk/external/fieldtrip/ft_dependencycheck.m M /trunk/external/fieldtrip/ft_detect_movement.m D /trunk/external/fieldtrip/ft_documentationindex.m D /trunk/external/fieldtrip/ft_documentationreference.m M /trunk/external/fieldtrip/ft_examplefunction.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_interpolatenan.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_networkanalysis.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumedownsample.m M /trunk/external/fieldtrip/ft_volumereslice.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/private/fixname.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/plotting/private/fixname.m A /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m A /trunk/external/fieldtrip/plotting/private/ft_warning.m D /trunk/external/fieldtrip/plotting/private/matlabversion.m D /trunk/external/fieldtrip/plotting/private/warning_once.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/private/fixname.m A /trunk/external/fieldtrip/preproc/private/ft_warning.m M /trunk/external/fieldtrip/preproc/private/print_once.m D /trunk/external/fieldtrip/preproc/private/warning_once.m M /trunk/external/fieldtrip/private/fixdimord.m M /trunk/external/fieldtrip/private/fixname.m M /trunk/external/fieldtrip/private/fixsampleinfo.m A /trunk/external/fieldtrip/private/ft_platform_supports.m A /trunk/external/fieldtrip/private/ft_warning.m M /trunk/external/fieldtrip/private/getusername.m D /trunk/external/fieldtrip/private/matlabversion.m M /trunk/external/fieldtrip/private/mxSerialize.m D /trunk/external/fieldtrip/private/mydepfun.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/rollback_provenance.m D /trunk/external/fieldtrip/private/warning_once.m M /trunk/external/fieldtrip/specest/ft_specest_hilbert.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/external/fieldtrip/specest/ft_specest_tfr.m M /trunk/external/fieldtrip/specest/ft_specest_wavelet.m M /trunk/external/fieldtrip/specest/private/fixname.m A /trunk/external/fieldtrip/specest/private/ft_warning.m D /trunk/external/fieldtrip/specest/private/warning_once.m M /trunk/external/fieldtrip/src/ft_getopt.c M /trunk/external/fieldtrip/src/mxSerialize.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesT.m M /trunk/external/fieldtrip/statfun/private/fixname.m A /trunk/external/fieldtrip/statfun/private/ft_warning.m D /trunk/external/fieldtrip/statfun/private/warning_once.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m A /trunk/external/fieldtrip/utilities/ft_channelcombination.m A /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m A /trunk/external/fieldtrip/utilities/ft_compile_mex.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m A /trunk/external/fieldtrip/utilities/ft_documentationindex.m A /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_selectdata_new.m A /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/ft_version.m A /trunk/external/fieldtrip/utilities/private/base64encode.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m M /trunk/external/fieldtrip/utilities/private/fixname.m M /trunk/external/fieldtrip/utilities/private/fixsampleinfo.m A /trunk/external/fieldtrip/utilities/private/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m A /trunk/external/fieldtrip/utilities/private/ft_warning.m A /trunk/external/fieldtrip/utilities/private/getaddress.m M /trunk/external/fieldtrip/utilities/private/gethostname.m M /trunk/external/fieldtrip/utilities/private/getusername.m D /trunk/external/fieldtrip/utilities/private/matlabversion.m M /trunk/external/fieldtrip/utilities/private/mxSerialize.m M /trunk/external/fieldtrip/utilities/private/randomseed.m D /trunk/external/fieldtrip/utilities/private/warning_once.m update of external/fieldtrip to r10482 ------------------------------------------------------------------------ r6485 | guillaume | 2015-06-24 16:33:26 +0100 (Wed, 24 Jun 2015) | 2 lines Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexa64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexa64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexa64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexa64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexa64 Compiled MEX files for 64 bit Linux (MATLAB R2007a, gcc 4.5, OpenSUSE 11.3) ------------------------------------------------------------------------ r6486 | guillaume | 2015-06-24 17:27:17 +0100 (Wed, 24 Jun 2015) | 2 lines Changed paths: M /trunk/spm_contrasts.m M /trunk/spm_data_hdr_write.m M /trunk/spm_data_read.m M /trunk/spm_spm.m Enhancement: also store SurfaceID in all GLM output files. ------------------------------------------------------------------------ r6487 | peter | 2015-06-25 17:15:15 +0100 (Thu, 25 Jun 2015) | 1 line Changed paths: M /trunk/spm_dcm_post_hoc.m A /trunk/tests/test_spm_dcm_post_hoc.m Enabled saving of the BPA in spm_dcm_post_hoc and added a basic unit test ------------------------------------------------------------------------ r6488 | peter | 2015-06-25 17:57:13 +0100 (Thu, 25 Jun 2015) | 1 line Changed paths: M /trunk/tests/test_spm_dcm_post_hoc.m Minor fixes to unit test for spm_dcm_post_hoc ------------------------------------------------------------------------ r6489 | john | 2015-06-26 12:46:29 +0100 (Fri, 26 Jun 2015) | 4 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/toolbox/Shoot/spm_shoot_defaults.m M /trunk/toolbox/Shoot/spm_shoot_template.m * Fixed DICOM problem that Suz found in the code for dealing with ICE dims. * If the template is smoothed, the initial velocities should not sum to zero in the shooting. Changed the code to make this the case. ------------------------------------------------------------------------ r6490 | guillaume | 2015-06-26 12:51:46 +0100 (Fri, 26 Jun 2015) | 2 lines Changed paths: M /trunk/spm_contrasts.m M /trunk/spm_graph.m M /trunk/spm_summarise.m Enhancement: improving compatibility with surface-based analyses. Thanks to Christian G. ------------------------------------------------------------------------ r6491 | peter | 2015-06-26 13:06:10 +0100 (Fri, 26 Jun 2015) | 1 line Changed paths: A /trunk/tests/test_spm_BMS_gibbs.m Added unit test for spm_BMS_gibbs ------------------------------------------------------------------------ r6492 | guillaume | 2015-06-26 15:27:40 +0100 (Fri, 26 Jun 2015) | 2 lines Changed paths: M /trunk/spm_tests.m M /trunk/tests/test_spm_BMS_gibbs.m M /trunk/tests/test_spm_dcm_post_hoc.m Enhancement: allow to test single file. ------------------------------------------------------------------------ r6493 | gareth | 2015-07-03 06:25:59 +0100 (Fri, 03 Jul 2015) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m use total number temporal modes for F calculation ------------------------------------------------------------------------ r6494 | gareth | 2015-07-06 11:23:04 +0100 (Mon, 06 Jul 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/config/spm_cfg_eeg_inv_simulate.m M /trunk/spm_eeg_invert_EBoptimise.m M /trunk/spm_eeg_invert_classic.m bug fixes and update of spm_eeg_invert_classic to handle sparse EBB ------------------------------------------------------------------------ r6495 | peter | 2015-07-07 15:56:18 +0100 (Tue, 07 Jul 2015) | 1 line Changed paths: M /trunk/spm_fmri_concatenate.m Corrected a comment ------------------------------------------------------------------------ r6496 | gareth | 2015-07-08 14:52:34 +0100 (Wed, 08 Jul 2015) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m moved sparseEBB to ARD optimization ------------------------------------------------------------------------ r6497 | guillaume | 2015-07-15 14:01:15 +0100 (Wed, 15 Jul 2015) | 2 lines Changed paths: M /trunk/spm_parrec2nifti.m Bug fix: overflow when computing file size. ------------------------------------------------------------------------ r6498 | gareth | 2015-07-15 20:13:31 +0100 (Wed, 15 Jul 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/spm_eeg_assemble_priors.m M /trunk/spm_eeg_invert_setuppatches.m tweaks to modular inversion scheme ------------------------------------------------------------------------ r6499 | gareth | 2015-07-16 14:37:41 +0100 (Thu, 16 Jul 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_optimize.m Fixed Fmax bug in spm_cfg_eeg_inv_optimize.m ------------------------------------------------------------------------ r6500 | guillaume | 2015-07-16 15:26:42 +0100 (Thu, 16 Jul 2015) | 2 lines Changed paths: M /trunk/spm_parrec2nifti.m Bug fix: better handling of slice order. Thanks to Stephanie L. ------------------------------------------------------------------------ r6501 | spm | 2015-07-17 15:32:09 +0100 (Fri, 17 Jul 2015) | 2 lines Changed paths: M /trunk/spm_dcm_peb_full.m M /trunk/spm_eeg_inv_vbecd_disp.m M /trunk/spm_eeg_invert_classic.m M /trunk/spm_eeg_invert_prepro.m M /trunk/toolbox/FieldMap/pm_pad.m M /trunk/toolbox/FieldMap/tbx_cfg_fieldmap.m M /trunk/toolbox/SPEM_and_DCM/spm_SEM_demo.m M /trunk/toolbox/Shoot/spm_shoot_scalmom.m Doc: make sure all files use ASCII encoding (file | grep UTF, iconv). ------------------------------------------------------------------------ r6502 | karl | 2015-07-22 12:37:13 +0100 (Wed, 22 Jul 2015) | 1 line Changed paths: M /trunk/spm_DEM.m M /trunk/spm_DEM_eval_diff.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m A /trunk/toolbox/DEM/DEM_demo_ontology.m M /trunk/toolbox/DEM/spm_MDP_DP.m M /trunk/toolbox/DEM/spm_MDP_VB.m diagnostic ontology demo added – plus minor upgrades to Dem routines ------------------------------------------------------------------------ r6503 | guillaume | 2015-07-22 12:43:06 +0100 (Wed, 22 Jul 2015) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m Enhancement: modification suggested by Tibor A. ------------------------------------------------------------------------ r6504 | guillaume | 2015-07-22 14:42:43 +0100 (Wed, 22 Jul 2015) | 2 lines Changed paths: M /trunk/spm_render.m M /trunk/toolbox/FieldMap/FieldMap_create.m Enhancements: backward compatibility with old MATLAB versions (spm_render.m) and 4D files handling (FieldMap_create.m). Thanks to Tibor A. ------------------------------------------------------------------------ r6505 | guillaume | 2015-07-22 15:23:30 +0100 (Wed, 22 Jul 2015) | 3 lines Changed paths: M /trunk/spm_input.m Bug fix: similar to r5514, compatibility with MATLAB's HG2. https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;856740ca.1507 ------------------------------------------------------------------------ r6506 | karl | 2015-07-24 11:26:51 +0100 (Fri, 24 Jul 2015) | 1 line Changed paths: M /trunk/spm_ADEM_update.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_fit.m M /trunk/spm_dcm_peb.m A /trunk/spm_dem2dcm.m M /trunk/toolbox/DEM/DEM_demo_ontology.m M /trunk/toolbox/Neural_Models/spm_erp2csd_demo.m Minor upgrade to DEM demo routines ------------------------------------------------------------------------ r6507 | guillaume | 2015-07-24 17:48:02 +0100 (Fri, 24 Jul 2015) | 5 lines Changed paths: M /trunk/@gifti/fieldnames.m M /trunk/@gifti/isfield.m M /trunk/@gifti/save.m M /trunk/@gifti/struct.m M /trunk/@gifti/subsasgn.m Bug fix: small adjustments following discussion with Nick O. * fieldnames/struct/isfield: enforce unique fieldnames * subsasgn: NIFTI_INTENT_NODE_INDEX DataArray should be first. * save: the last dimension of a DataArray shall never be one. ------------------------------------------------------------------------ r6508 | karl | 2015-07-25 16:23:25 +0100 (Sat, 25 Jul 2015) | 1 line Changed paths: M /trunk/spm_DEM_qP.m M /trunk/spm_LAP.m M /trunk/spm_dcm_peb.m M /trunk/spm_dem2dcm.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_ontology.m final (at the present time) changes to ontology demo ------------------------------------------------------------------------ r6509 | peter | 2015-07-30 12:54:48 +0100 (Thu, 30 Jul 2015) | 1 line Changed paths: M /trunk/spm_dcm_average.m Fixed graphics bug where F was misreported. Thanks to Roni and Rik. ------------------------------------------------------------------------ r6510 | guillaume | 2015-07-31 15:49:33 +0100 (Fri, 31 Jul 2015) | 2 lines Changed paths: M /trunk/spm_input.m M /trunk/spm_render.m Bug fix: parameters input in command line mode. ------------------------------------------------------------------------ r6511 | karl | 2015-08-02 16:05:41 +0100 (Sun, 02 Aug 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/DEM_demo_ontology.m M /trunk/toolbox/DEM/spm_MDP_VB.m development work on spm_NDP_VB and related routines ------------------------------------------------------------------------ r6512 | spm | 2015-08-04 12:49:24 +0100 (Tue, 04 Aug 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_warning.m A /trunk/external/fieldtrip/edf2fieldtrip.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/ft_voltype.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/getdimord.m A /trunk/external/fieldtrip/fileio/private/loadvar.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ncs.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_headmodel_asa.m M /trunk/external/fieldtrip/forward/ft_headmodel_bemcp.m M /trunk/external/fieldtrip/forward/ft_headmodel_concentricspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_dipoli.m M /trunk/external/fieldtrip/forward/ft_headmodel_fns.m M /trunk/external/fieldtrip/forward/ft_headmodel_halfspace.m M /trunk/external/fieldtrip/forward/ft_headmodel_infinite.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/ft_headmodel_simbio.m M /trunk/external/fieldtrip/forward/ft_headmodel_singleshell.m M /trunk/external/fieldtrip/forward/ft_headmodel_singlesphere.m M /trunk/external/fieldtrip/forward/ft_headmodel_slab.m M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/ft_sourcedepth.m M /trunk/external/fieldtrip/forward/ft_transform_vol.m M /trunk/external/fieldtrip/forward/ft_voltype.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_warning.m M /trunk/external/fieldtrip/forward/private/headsurface.m M /trunk/external/fieldtrip/forward/private/triangle4pt.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_channelrepair.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_prepare_bemmodel.m M /trunk/external/fieldtrip/ft_prepare_concentricspheres.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_localspheres.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_singleshell.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m M /trunk/external/fieldtrip/inverse/music.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/inverse/private/ft_voltype.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/nutmeg2fieldtrip.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/ft_voltype.m M /trunk/external/fieldtrip/plotting/private/ft_warning.m M /trunk/external/fieldtrip/preproc/private/ft_warning.m M /trunk/external/fieldtrip/private/browse_topoplotVAR.m M /trunk/external/fieldtrip/private/ft_fetch_vol.m D /trunk/external/fieldtrip/private/ft_warning.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/headsurface.m A /trunk/external/fieldtrip/private/hline.m M /trunk/external/fieldtrip/private/menu_pipeline.m M /trunk/external/fieldtrip/private/prepare_headmodel.m M /trunk/external/fieldtrip/private/triangle4pt.m A /trunk/external/fieldtrip/private/vline.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/specest/private/ft_warning.m M /trunk/external/fieldtrip/statfun/private/ft_warning.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m M /trunk/external/fieldtrip/utilities/ft_version.m A /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m D /trunk/external/fieldtrip/utilities/private/ft_warning.m M /trunk/external/fieldtrip/utilities/private/getdimord.m update of external/fieldtrip to r10569. ------------------------------------------------------------------------ r6513 | guillaume | 2015-08-05 18:52:13 +0100 (Wed, 05 Aug 2015) | 3 lines Changed paths: M /trunk/@gifti/save.m M /trunk/@gifti/subsasgn.m A /trunk/tests/test_gifti.m New feature: export GIfTI in VTK format (http://www.vtk.org/wp-content/uploads/2015/04/file-formats.pdf) Unit tests for @gifti. ------------------------------------------------------------------------ r6514 | volkmar | 2015-08-06 11:07:53 +0100 (Thu, 06 Aug 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_run_runjobs.m Properly escape filenames. ------------------------------------------------------------------------ r6515 | volkmar | 2015-08-06 11:07:55 +0100 (Thu, 06 Aug 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_ui.m Do not try to display actual error message in cfg_ui. It is misleading and HTML-formatted and does not display in a dialog box. Refer to command window instead. ------------------------------------------------------------------------ r6516 | guillaume | 2015-08-07 18:28:33 +0100 (Fri, 07 Aug 2015) | 2 lines Changed paths: M /trunk/@gifti/save.m A /trunk/@gifti/saveas.m M /trunk/tests/test_gifti.m Enhancement: binary export for legacy and XML VTK formats. ------------------------------------------------------------------------ r6517 | karl | 2015-08-10 12:21:53 +0100 (Mon, 10 Aug 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m A /trunk/toolbox/DEM/spm_MDP_VB_LFP.m Development of habit demo ------------------------------------------------------------------------ r6518 | guillaume | 2015-08-10 17:30:47 +0100 (Mon, 10 Aug 2015) | 1 line Changed paths: A /trunk/@gifti/private/mvtk_write.m M /trunk/@gifti/saveas.m Refactoring: VTK export. ------------------------------------------------------------------------ r6519 | karl | 2015-08-11 20:06:57 +0100 (Tue, 11 Aug 2015) | 1 line Changed paths: M /trunk/spm_softmax.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m Habit demo upgrade ------------------------------------------------------------------------ r6520 | guillaume | 2015-08-13 17:13:06 +0100 (Thu, 13 Aug 2015) | 2 lines Changed paths: M /trunk/@gifti/private/mvtk_write.m M /trunk/spm_atlas.m M /trunk/spm_mesh_render.m M /trunk/spm_surf.m Enhancements: minor adjustments for surface rendering. ------------------------------------------------------------------------ r6521 | karl | 2015-08-14 12:02:47 +0100 (Fri, 14 Aug 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_DP.m M /trunk/toolbox/DEM/spm_MDP_VB.m MDP habit demo development ------------------------------------------------------------------------ r6522 | john | 2015-08-14 19:55:42 +0100 (Fri, 14 Aug 2015) | 2 lines Changed paths: M /trunk/@file_array/subsasgn.m M /trunk/toolbox/DARTEL/tbx_cfg_dartel.m See email from Scott 14-Aug-2015 ------------------------------------------------------------------------ r6523 | karl | 2015-08-15 21:57:28 +0100 (Sat, 15 Aug 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m A /trunk/toolbox/DEM/spm_MDP_VB_game.m A /trunk/toolbox/DEM/spm_MDP_VB_trial.m NDP habit demo development ------------------------------------------------------------------------ r6524 | guillaume | 2015-08-18 11:09:01 +0100 (Tue, 18 Aug 2015) | 2 lines Changed paths: M /trunk/@xmltree/editor.m M /trunk/spm.m Enhancement: make sure mfilename('fullpath') returns M-file path instead of spm('Dir') in compiled mode. ------------------------------------------------------------------------ r6525 | vladimir | 2015-08-20 11:03:16 +0100 (Thu, 20 Aug 2015) | 1 line Changed paths: M /trunk/@meeg/meeg.m M /trunk/@meeg/private/checkmeeg.m A /trunk/@meeg/trialtag.m Added a new field and method for adding auxiliary data to trials ------------------------------------------------------------------------ r6526 | vladimir | 2015-08-20 11:28:36 +0100 (Thu, 20 Aug 2015) | 1 line Changed paths: M /trunk/spm_eeg_contrast.m M /trunk/spm_eeg_grandmean.m M /trunk/spm_eeg_merge.m M /trunk/spm_eeg_remove_bad_trials.m More fixes for trial tagging ------------------------------------------------------------------------ r6527 | guillaume | 2015-08-20 18:40:41 +0100 (Thu, 20 Aug 2015) | 2 lines Changed paths: M /trunk/spm_deformations.m Bug fix: cellstr dependencies should be column-wise. Thanks to Marco T. ------------------------------------------------------------------------ r6528 | guillaume | 2015-08-21 12:48:54 +0100 (Fri, 21 Aug 2015) | 2 lines Changed paths: M /trunk/spm_dcm_post_hoc.m M /trunk/spm_eeg_render.m M /trunk/spm_plot_ci.m Refactoring: use axes handle in plots. ------------------------------------------------------------------------ r6529 | karl | 2015-08-21 14:27:38 +0100 (Fri, 21 Aug 2015) | 1 line Changed paths: M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_find_pC.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Minor upgrade to DCM empirical Bayes routines (and other demos) ------------------------------------------------------------------------ r6530 | guillaume | 2015-08-21 15:43:52 +0100 (Fri, 21 Aug 2015) | 2 lines Changed paths: A /trunk/compat/loadxml.m (from /trunk/loadxml.m:6529) A /trunk/compat/savexml.m (from /trunk/savexml.m:6529) D /trunk/loadxml.m D /trunk/savexml.m M /trunk/spm_jobman.m M /trunk/spm_select.m Refactoring: remove storage of batch files in XML. ------------------------------------------------------------------------ r6531 | guillaume | 2015-08-21 17:12:52 +0100 (Fri, 21 Aug 2015) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m Bug fix: trying to figure out the offset table preceding compressed data. ------------------------------------------------------------------------ r6532 | karl | 2015-08-23 14:59:19 +0100 (Sun, 23 Aug 2015) | 1 line Changed paths: M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_peb_rnd.m M /trunk/spm_dcm_ppd.m M /trunk/spm_fieldindices.m Minor upgrade and debugging of PEB for DCM routines ------------------------------------------------------------------------ r6533 | peter | 2015-08-24 11:57:35 +0100 (Mon, 24 Aug 2015) | 1 line Changed paths: M /trunk/spm_fmri_concatenate.m Updated documentation in spm_fmri_concatenate.m ------------------------------------------------------------------------ r6534 | guillaume | 2015-08-24 17:02:56 +0100 (Mon, 24 Aug 2015) | 2 lines Changed paths: M /trunk/spm_get_lm.m M /trunk/src/spm_get_lm.c A /trunk/tests/test_spm_get_lm.m Enhancement: add option to specify connectivity criterion. ------------------------------------------------------------------------ r6535 | vladimir | 2015-08-25 12:45:26 +0100 (Tue, 25 Aug 2015) | 1 line Changed paths: M /trunk/@meeg/private/getset.m M /trunk/@meeg/selectchannels.m M /trunk/@meeg/sensors.m M /trunk/config/spm_cfg_eeg_channel_selector.m M /trunk/config/spm_cfg_eeg_convert2images.m M /trunk/spm_eeg_convert2images.m M /trunk/spm_eeg_reduce_pca.m M /trunk/spm_mesh_inflate.m Changes to support new analysis in source space ------------------------------------------------------------------------ r6536 | guillaume | 2015-08-26 14:53:45 +0100 (Wed, 26 Aug 2015) | 3 lines Changed paths: M /trunk/config/spm_cfg_imcalc.m Bug fix: partial fix for error reported on the mailing list ('Images' in tbx_cfg_dartel.m expects 'nifti' instead of 'image'). https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;1fa3a3a8.1508 ------------------------------------------------------------------------ r6537 | guillaume | 2015-08-26 17:28:53 +0100 (Wed, 26 Aug 2015) | 2 lines Changed paths: A /trunk/spm_mesh_calc.m New feature: evaluate functions on meshes' data, a la ImCalc. ------------------------------------------------------------------------ r6538 | karl | 2015-08-28 13:54:40 +0100 (Fri, 28 Aug 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Further development of having demo in DEM ------------------------------------------------------------------------ r6539 | karl | 2015-09-04 09:47:25 +0100 (Fri, 04 Sep 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Near final revisions of habit demos in DEM toolbox ------------------------------------------------------------------------ r6540 | karl | 2015-09-05 11:06:42 +0100 (Sat, 05 Sep 2015) | 1 line Changed paths: M /trunk/spm_DFP.m M /trunk/spm_DFP_plot.m M /trunk/toolbox/DEM/DEM_demo_DFP.m hidden movie facility added to variational filtering ------------------------------------------------------------------------ r6541 | karl | 2015-09-09 12:46:56 +0100 (Wed, 09 Sep 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb_rnd_search.m Upgrade of hyper-prior optimisation for PEB - BMC ------------------------------------------------------------------------ r6542 | karl | 2015-09-09 12:48:34 +0100 (Wed, 09 Sep 2015) | 1 line Changed paths: M /trunk/@meeg/check.m M /trunk/@meeg/modality.m M /trunk/toolbox/dcm_meeg/spm_api_erp.m ------------------------------------------------------------------------ r6543 | will | 2015-09-10 13:56:54 +0100 (Thu, 10 Sep 2015) | 1 line Changed paths: D /trunk/toolbox/mci/README.m D /trunk/toolbox/mci/demos D /trunk/toolbox/mci/gradients D /trunk/toolbox/mci/inference D /trunk/toolbox/mci/mci_setpath.m D /trunk/toolbox/mci/models D /trunk/toolbox/mci/plotting Deleting old version of MCI toolbox to be overwritten by new one ------------------------------------------------------------------------ r6544 | will | 2015-09-10 14:20:36 +0100 (Thu, 10 Sep 2015) | 1 line Changed paths: A /trunk/toolbox/mci/Contents.m A /trunk/toolbox/mci/data A /trunk/toolbox/mci/data/README A /trunk/toolbox/mci/data/pima_te.txt A /trunk/toolbox/mci/data/pima_tr.txt A /trunk/toolbox/mci/data/synth_te.txt A /trunk/toolbox/mci/data/synth_tr.txt A /trunk/toolbox/mci/demo-gradients A /trunk/toolbox/mci/demo-gradients/mci_compare_forward.m A /trunk/toolbox/mci/demo-gradients/mci_compare_gradients.m A /trunk/toolbox/mci/demo-gradients/mci_compare_jacobians.m A /trunk/toolbox/mci/demo-gradients/mci_compare_sensitivities.m A /trunk/toolbox/mci/demo-group A /trunk/toolbox/mci/demo-group/mci_demo_mfx_lds.m A /trunk/toolbox/mci/demo-group/mci_demo_rfx_linear.m A /trunk/toolbox/mci/demo-group/mci_demo_rfx_logistic.m A /trunk/toolbox/mci/demo-group/mci_demo_rfx_nmm.m A /trunk/toolbox/mci/demo-group/mci_demo_rfx_rphase.m A /trunk/toolbox/mci/demo-thermodynamic A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_linsqr.m A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ramsay.m A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ramsay_surface.m A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti.m A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti_chains.m A /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti_compare.m A /trunk/toolbox/mci/demo-thermodynamic/ramsay-surface.mat A /trunk/toolbox/mci/mci_setpath.m New MCI code ------------------------------------------------------------------------ r6545 | vladimir | 2015-09-11 13:10:19 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_headmodel.m bugfix - check on the dataset was not done when using batch head model preparation ------------------------------------------------------------------------ r6546 | will | 2015-09-11 13:20:23 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: A /trunk/toolbox/mci/demo-models A /trunk/toolbox/mci/demo-models/mci_demo_approach.m A /trunk/toolbox/mci/demo-models/mci_demo_discount.m A /trunk/toolbox/mci/demo-models/mci_demo_growth.m A /trunk/toolbox/mci/demo-models/mci_demo_lds.m A /trunk/toolbox/mci/demo-models/mci_demo_linear.m A /trunk/toolbox/mci/demo-models/mci_demo_logistic.m A /trunk/toolbox/mci/demo-models/mci_demo_nmm.m A /trunk/toolbox/mci/demo-models/mci_demo_phase.m A /trunk/toolbox/mci/demo-models/mci_demo_rphase.m checking svn ------------------------------------------------------------------------ r6547 | will | 2015-09-11 13:31:51 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: A /trunk/toolbox/mci/gradients A /trunk/toolbox/mci/gradients/mci_compare_setup.m A /trunk/toolbox/mci/gradients/spm_mci_adjoint.m A /trunk/toolbox/mci/gradients/spm_mci_adjoint_int.m A /trunk/toolbox/mci/gradients/spm_mci_adjoint_sun.m A /trunk/toolbox/mci/gradients/spm_mci_flow_sun.m A /trunk/toolbox/mci/gradients/spm_mci_flow_t.m A /trunk/toolbox/mci/gradients/spm_mci_fwd.m A /trunk/toolbox/mci/gradients/spm_mci_grad_curve.m A /trunk/toolbox/mci/gradients/spm_mci_joint.m A /trunk/toolbox/mci/gradients/spm_mci_joint_grad.m A /trunk/toolbox/mci/gradients/spm_mci_sens.m A /trunk/toolbox/mci/gradients/spm_mci_sens_init.m A /trunk/toolbox/mci/gradients/spm_mci_sens_sun.m A /trunk/toolbox/mci/inference A /trunk/toolbox/mci/inference/spm_mci_ais.m A /trunk/toolbox/mci/inference/spm_mci_ais_single.m A /trunk/toolbox/mci/inference/spm_mci_ais_single_vl.m A /trunk/toolbox/mci/inference/spm_mci_check.m A /trunk/toolbox/mci/inference/spm_mci_diag.m A /trunk/toolbox/mci/inference/spm_mci_diff.m A /trunk/toolbox/mci/inference/spm_mci_ess.m A /trunk/toolbox/mci/inference/spm_mci_fixed.m A /trunk/toolbox/mci/inference/spm_mci_glike.m A /trunk/toolbox/mci/inference/spm_mci_glike_deriv.m A /trunk/toolbox/mci/inference/spm_mci_gprior_deriv.m A /trunk/toolbox/mci/inference/spm_mci_init_flow.m A /trunk/toolbox/mci/inference/spm_mci_isvl.m A /trunk/toolbox/mci/inference/spm_mci_lgv.m A /trunk/toolbox/mci/inference/spm_mci_lgv_vl.m A /trunk/toolbox/mci/inference/spm_mci_like_ind.m A /trunk/toolbox/mci/inference/spm_mci_mfx.m A /trunk/toolbox/mci/inference/spm_mci_mfx_dynamic.m A /trunk/toolbox/mci/inference/spm_mci_mh.m A /trunk/toolbox/mci/inference/spm_mci_mh_update.m A /trunk/toolbox/mci/inference/spm_mci_minit.m A /trunk/toolbox/mci/inference/spm_mci_mvnpost.m A /trunk/toolbox/mci/inference/spm_mci_mvntest.m A /trunk/toolbox/mci/inference/spm_mci_obsnoise.m A /trunk/toolbox/mci/inference/spm_mci_phm.m A /trunk/toolbox/mci/inference/spm_mci_pop.m A /trunk/toolbox/mci/inference/spm_mci_popdef.m A /trunk/toolbox/mci/inference/spm_mci_post.m A /trunk/toolbox/mci/inference/spm_mci_postslices.m A /trunk/toolbox/mci/inference/spm_mci_priors.m A /trunk/toolbox/mci/inference/spm_mci_progress.m A /trunk/toolbox/mci/inference/spm_mci_quantiles.m A /trunk/toolbox/mci/inference/spm_mci_random.m A /trunk/toolbox/mci/inference/spm_mci_report.m A /trunk/toolbox/mci/inference/spm_mci_stat.m A /trunk/toolbox/mci/inference/spm_mci_switch.m A /trunk/toolbox/mci/inference/spm_mci_switch_prep.m A /trunk/toolbox/mci/inference/spm_mci_update_cov.m A /trunk/toolbox/mci/inference/spm_mci_vw_init.m A /trunk/toolbox/mci/inference/spm_mvtpdf.m A /trunk/toolbox/mci/inference/spm_nwcov.m A /trunk/toolbox/mci/inference/spm_nwpost.m A /trunk/toolbox/mci/inference/spm_nwrnd.m A /trunk/toolbox/mci/inference/spm_wishrnd.m A /trunk/toolbox/mci/models A /trunk/toolbox/mci/models/approach A /trunk/toolbox/mci/models/approach/mci_approach_deriv.m A /trunk/toolbox/mci/models/approach/mci_approach_gen.m A /trunk/toolbox/mci/models/approach/mci_approach_like.m A /trunk/toolbox/mci/models/approach/mci_approach_struct.m A /trunk/toolbox/mci/models/discount A /trunk/toolbox/mci/models/discount/mci_discount_act.m A /trunk/toolbox/mci/models/discount/mci_discount_deriv.m A /trunk/toolbox/mci/models/discount/mci_discount_gen.m A /trunk/toolbox/mci/models/discount/mci_discount_like.m A /trunk/toolbox/mci/models/discount/mci_discount_struct.m A /trunk/toolbox/mci/models/growth A /trunk/toolbox/mci/models/growth/mci_pb_deriv.m A /trunk/toolbox/mci/models/growth/mci_pb_gen.m A /trunk/toolbox/mci/models/growth/mci_pb_like.m A /trunk/toolbox/mci/models/growth/mci_pb_struct.m A /trunk/toolbox/mci/models/lds A /trunk/toolbox/mci/models/lds/mci_exp_init.m A /trunk/toolbox/mci/models/lds/mci_interp_init.m A /trunk/toolbox/mci/models/lds/mci_lds_dfdx.m A /trunk/toolbox/mci/models/lds/mci_lds_fx.m A /trunk/toolbox/mci/models/lds/mci_lds_gen.m A /trunk/toolbox/mci/models/lds/mci_lds_group_data.m A /trunk/toolbox/mci/models/lds/mci_lds_gx.m A /trunk/toolbox/mci/models/lds/mci_lds_lat2par.m A /trunk/toolbox/mci/models/lds/mci_lds_par2lat.m A /trunk/toolbox/mci/models/lds/mci_lds_params.m A /trunk/toolbox/mci/models/lds/mci_lds_plot_fit.m A /trunk/toolbox/mci/models/lds/mci_lds_plot_params.m A /trunk/toolbox/mci/models/lds/mci_lds_struct.m A /trunk/toolbox/mci/models/linear A /trunk/toolbox/mci/models/linear/mci_linear_deriv.m A /trunk/toolbox/mci/models/linear/mci_linear_gen.m A /trunk/toolbox/mci/models/linear/mci_linear_like.m A /trunk/toolbox/mci/models/linear/mci_linear_plot_fit.m A /trunk/toolbox/mci/models/linear/mci_linear_post.m A /trunk/toolbox/mci/models/linear/mci_linear_struct.m A /trunk/toolbox/mci/models/linsqr A /trunk/toolbox/mci/models/linsqr/mci_linsqr_deriv.m A /trunk/toolbox/mci/models/linsqr/mci_linsqr_gen.m A /trunk/toolbox/mci/models/linsqr/mci_linsqr_like.m A /trunk/toolbox/mci/models/linsqr/mci_linsqr_struct.m A /trunk/toolbox/mci/models/logistic A /trunk/toolbox/mci/models/logistic/mci_logistic_act.m A /trunk/toolbox/mci/models/logistic/mci_logistic_deriv.m A /trunk/toolbox/mci/models/logistic/mci_logistic_gen.m A /trunk/toolbox/mci/models/logistic/mci_logistic_like.m A /trunk/toolbox/mci/models/logistic/mci_logistic_struct.m A /trunk/toolbox/mci/models/nmm A /trunk/toolbox/mci/models/nmm/mci_nmm_fx_delay.m A /trunk/toolbox/mci/models/nmm/mci_nmm_gen.m A /trunk/toolbox/mci/models/nmm/mci_nmm_params.m A /trunk/toolbox/mci/models/nmm/mci_nmm_r2_gx.m A /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_dfdp.m A /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_dfdx.m A /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_fx.m A /trunk/toolbox/mci/models/nmm/mci_nmm_r2p6_fx.m A /trunk/toolbox/mci/models/nmm/mci_nmm_struct.m A /trunk/toolbox/mci/models/phase A /trunk/toolbox/mci/models/phase/mci_phase_dfdp.m A /trunk/toolbox/mci/models/phase/mci_phase_dfdx.m A /trunk/toolbox/mci/models/phase/mci_phase_fx.m A /trunk/toolbox/mci/models/phase/mci_phase_gx.m A /trunk/toolbox/mci/models/phase/mci_phase_init.m A /trunk/toolbox/mci/models/phase/mci_rphase_dfdp.m A /trunk/toolbox/mci/models/phase/mci_rphase_dfdx.m A /trunk/toolbox/mci/models/phase/mci_rphase_fx.m A /trunk/toolbox/mci/models/phase/mci_rphase_gen.m A /trunk/toolbox/mci/models/phase/mci_rphase_struct.m A /trunk/toolbox/mci/models/ramsay A /trunk/toolbox/mci/models/ramsay/mci_ramsay_fx.m A /trunk/toolbox/mci/models/ramsay/mci_ramsay_gen.m A /trunk/toolbox/mci/models/ramsay/mci_ramsay_gx.m A /trunk/toolbox/mci/models/ramsay/mci_ramsay_struct.m A /trunk/toolbox/mci/plotting A /trunk/toolbox/mci/plotting/mci_plot_dist.m A /trunk/toolbox/mci/plotting/mci_plot_dist_multi.m A /trunk/toolbox/mci/plotting/mci_plot_noiseSD.m A /trunk/toolbox/mci/plotting/mci_plot_outputs.m A /trunk/toolbox/mci/plotting/mci_plot_surface.m MCI toolbox: updated code ------------------------------------------------------------------------ r6548 | will | 2015-09-11 13:39:47 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: M /trunk/toolbox/mci/Contents.m M /trunk/toolbox/mci/data/README M /trunk/toolbox/mci/data/pima_te.txt M /trunk/toolbox/mci/data/pima_tr.txt M /trunk/toolbox/mci/data/synth_te.txt M /trunk/toolbox/mci/data/synth_tr.txt M /trunk/toolbox/mci/demo-gradients/mci_compare_forward.m M /trunk/toolbox/mci/demo-gradients/mci_compare_gradients.m M /trunk/toolbox/mci/demo-gradients/mci_compare_jacobians.m M /trunk/toolbox/mci/demo-gradients/mci_compare_sensitivities.m M /trunk/toolbox/mci/demo-group/mci_demo_mfx_lds.m M /trunk/toolbox/mci/demo-group/mci_demo_rfx_linear.m M /trunk/toolbox/mci/demo-group/mci_demo_rfx_logistic.m M /trunk/toolbox/mci/demo-group/mci_demo_rfx_nmm.m M /trunk/toolbox/mci/demo-group/mci_demo_rfx_rphase.m M /trunk/toolbox/mci/demo-models/mci_demo_approach.m M /trunk/toolbox/mci/demo-models/mci_demo_discount.m M /trunk/toolbox/mci/demo-models/mci_demo_growth.m M /trunk/toolbox/mci/demo-models/mci_demo_lds.m M /trunk/toolbox/mci/demo-models/mci_demo_linear.m M /trunk/toolbox/mci/demo-models/mci_demo_logistic.m M /trunk/toolbox/mci/demo-models/mci_demo_nmm.m M /trunk/toolbox/mci/demo-models/mci_demo_phase.m M /trunk/toolbox/mci/demo-models/mci_demo_rphase.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_linsqr.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ramsay.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ramsay_surface.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti_chains.m M /trunk/toolbox/mci/demo-thermodynamic/mci_demo_ti_compare.m M /trunk/toolbox/mci/demo-thermodynamic/ramsay-surface.mat M /trunk/toolbox/mci/gradients/mci_compare_setup.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint_int.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint_sun.m M /trunk/toolbox/mci/gradients/spm_mci_flow_sun.m M /trunk/toolbox/mci/gradients/spm_mci_flow_t.m M /trunk/toolbox/mci/gradients/spm_mci_fwd.m M /trunk/toolbox/mci/gradients/spm_mci_grad_curve.m M /trunk/toolbox/mci/gradients/spm_mci_joint.m M /trunk/toolbox/mci/gradients/spm_mci_joint_grad.m M /trunk/toolbox/mci/gradients/spm_mci_sens.m M /trunk/toolbox/mci/gradients/spm_mci_sens_init.m M /trunk/toolbox/mci/gradients/spm_mci_sens_sun.m M /trunk/toolbox/mci/inference/spm_mci_ais.m M /trunk/toolbox/mci/inference/spm_mci_ais_single.m M /trunk/toolbox/mci/inference/spm_mci_ais_single_vl.m M /trunk/toolbox/mci/inference/spm_mci_check.m M /trunk/toolbox/mci/inference/spm_mci_diag.m M /trunk/toolbox/mci/inference/spm_mci_diff.m M /trunk/toolbox/mci/inference/spm_mci_ess.m M /trunk/toolbox/mci/inference/spm_mci_fixed.m M /trunk/toolbox/mci/inference/spm_mci_glike.m M /trunk/toolbox/mci/inference/spm_mci_glike_deriv.m M /trunk/toolbox/mci/inference/spm_mci_gprior_deriv.m M /trunk/toolbox/mci/inference/spm_mci_init_flow.m M /trunk/toolbox/mci/inference/spm_mci_isvl.m M /trunk/toolbox/mci/inference/spm_mci_lgv.m M /trunk/toolbox/mci/inference/spm_mci_lgv_vl.m M /trunk/toolbox/mci/inference/spm_mci_like_ind.m M /trunk/toolbox/mci/inference/spm_mci_mfx.m M /trunk/toolbox/mci/inference/spm_mci_mfx_dynamic.m M /trunk/toolbox/mci/inference/spm_mci_mh.m M /trunk/toolbox/mci/inference/spm_mci_mh_update.m M /trunk/toolbox/mci/inference/spm_mci_minit.m M /trunk/toolbox/mci/inference/spm_mci_mvnpost.m M /trunk/toolbox/mci/inference/spm_mci_mvntest.m M /trunk/toolbox/mci/inference/spm_mci_obsnoise.m M /trunk/toolbox/mci/inference/spm_mci_phm.m M /trunk/toolbox/mci/inference/spm_mci_pop.m M /trunk/toolbox/mci/inference/spm_mci_popdef.m M /trunk/toolbox/mci/inference/spm_mci_post.m M /trunk/toolbox/mci/inference/spm_mci_postslices.m M /trunk/toolbox/mci/inference/spm_mci_priors.m M /trunk/toolbox/mci/inference/spm_mci_progress.m M /trunk/toolbox/mci/inference/spm_mci_quantiles.m M /trunk/toolbox/mci/inference/spm_mci_random.m M /trunk/toolbox/mci/inference/spm_mci_report.m M /trunk/toolbox/mci/inference/spm_mci_stat.m M /trunk/toolbox/mci/inference/spm_mci_switch.m M /trunk/toolbox/mci/inference/spm_mci_switch_prep.m M /trunk/toolbox/mci/inference/spm_mci_update_cov.m M /trunk/toolbox/mci/inference/spm_mci_vw_init.m M /trunk/toolbox/mci/inference/spm_mvtpdf.m M /trunk/toolbox/mci/inference/spm_nwcov.m M /trunk/toolbox/mci/inference/spm_nwpost.m M /trunk/toolbox/mci/inference/spm_nwrnd.m M /trunk/toolbox/mci/inference/spm_wishrnd.m M /trunk/toolbox/mci/mci_setpath.m M /trunk/toolbox/mci/models/approach/mci_approach_deriv.m M /trunk/toolbox/mci/models/approach/mci_approach_gen.m M /trunk/toolbox/mci/models/approach/mci_approach_like.m M /trunk/toolbox/mci/models/approach/mci_approach_struct.m M /trunk/toolbox/mci/models/discount/mci_discount_act.m M /trunk/toolbox/mci/models/discount/mci_discount_deriv.m M /trunk/toolbox/mci/models/discount/mci_discount_gen.m M /trunk/toolbox/mci/models/discount/mci_discount_like.m M /trunk/toolbox/mci/models/discount/mci_discount_struct.m M /trunk/toolbox/mci/models/growth/mci_pb_deriv.m M /trunk/toolbox/mci/models/growth/mci_pb_gen.m M /trunk/toolbox/mci/models/growth/mci_pb_like.m M /trunk/toolbox/mci/models/growth/mci_pb_struct.m M /trunk/toolbox/mci/models/lds/mci_exp_init.m M /trunk/toolbox/mci/models/lds/mci_interp_init.m M /trunk/toolbox/mci/models/lds/mci_lds_dfdx.m M /trunk/toolbox/mci/models/lds/mci_lds_fx.m M /trunk/toolbox/mci/models/lds/mci_lds_gen.m M /trunk/toolbox/mci/models/lds/mci_lds_group_data.m M /trunk/toolbox/mci/models/lds/mci_lds_gx.m M /trunk/toolbox/mci/models/lds/mci_lds_lat2par.m M /trunk/toolbox/mci/models/lds/mci_lds_par2lat.m M /trunk/toolbox/mci/models/lds/mci_lds_params.m M /trunk/toolbox/mci/models/lds/mci_lds_plot_fit.m M /trunk/toolbox/mci/models/lds/mci_lds_plot_params.m M /trunk/toolbox/mci/models/lds/mci_lds_struct.m M /trunk/toolbox/mci/models/linear/mci_linear_deriv.m M /trunk/toolbox/mci/models/linear/mci_linear_gen.m M /trunk/toolbox/mci/models/linear/mci_linear_like.m M /trunk/toolbox/mci/models/linear/mci_linear_plot_fit.m M /trunk/toolbox/mci/models/linear/mci_linear_post.m M /trunk/toolbox/mci/models/linear/mci_linear_struct.m M /trunk/toolbox/mci/models/linsqr/mci_linsqr_deriv.m M /trunk/toolbox/mci/models/linsqr/mci_linsqr_gen.m M /trunk/toolbox/mci/models/linsqr/mci_linsqr_like.m M /trunk/toolbox/mci/models/linsqr/mci_linsqr_struct.m M /trunk/toolbox/mci/models/logistic/mci_logistic_act.m M /trunk/toolbox/mci/models/logistic/mci_logistic_deriv.m M /trunk/toolbox/mci/models/logistic/mci_logistic_gen.m M /trunk/toolbox/mci/models/logistic/mci_logistic_like.m M /trunk/toolbox/mci/models/logistic/mci_logistic_struct.m M /trunk/toolbox/mci/models/nmm/mci_nmm_fx_delay.m M /trunk/toolbox/mci/models/nmm/mci_nmm_gen.m M /trunk/toolbox/mci/models/nmm/mci_nmm_params.m M /trunk/toolbox/mci/models/nmm/mci_nmm_r2_gx.m M /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_dfdp.m M /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_dfdx.m M /trunk/toolbox/mci/models/nmm/mci_nmm_r2p2_fx.m M /trunk/toolbox/mci/models/nmm/mci_nmm_r2p6_fx.m M /trunk/toolbox/mci/models/nmm/mci_nmm_struct.m M /trunk/toolbox/mci/models/phase/mci_phase_dfdp.m M /trunk/toolbox/mci/models/phase/mci_phase_dfdx.m M /trunk/toolbox/mci/models/phase/mci_phase_fx.m M /trunk/toolbox/mci/models/phase/mci_phase_gx.m M /trunk/toolbox/mci/models/phase/mci_phase_init.m M /trunk/toolbox/mci/models/phase/mci_rphase_dfdp.m M /trunk/toolbox/mci/models/phase/mci_rphase_dfdx.m M /trunk/toolbox/mci/models/phase/mci_rphase_fx.m M /trunk/toolbox/mci/models/phase/mci_rphase_gen.m M /trunk/toolbox/mci/models/phase/mci_rphase_struct.m M /trunk/toolbox/mci/models/ramsay/mci_ramsay_fx.m M /trunk/toolbox/mci/models/ramsay/mci_ramsay_gen.m M /trunk/toolbox/mci/models/ramsay/mci_ramsay_gx.m M /trunk/toolbox/mci/models/ramsay/mci_ramsay_struct.m M /trunk/toolbox/mci/plotting/mci_plot_dist.m M /trunk/toolbox/mci/plotting/mci_plot_dist_multi.m M /trunk/toolbox/mci/plotting/mci_plot_noiseSD.m M /trunk/toolbox/mci/plotting/mci_plot_outputs.m M /trunk/toolbox/mci/plotting/mci_plot_surface.m MCI toolbox: datestamped ------------------------------------------------------------------------ r6549 | guillaume | 2015-09-11 16:37:48 +0100 (Fri, 11 Sep 2015) | 2 lines Changed paths: M /trunk/src/spm_mapping.c Bug fix: accept uint16 and uint32 in get_map_dat function. ------------------------------------------------------------------------ r6550 | spm | 2015-09-11 16:59:57 +0100 (Fri, 11 Sep 2015) | 2 lines Changed paths: A /trunk/@gifti/private/zstream.mexa64 M /trunk/spm_add.mexa64 M /trunk/spm_bsplinc.mexa64 M /trunk/spm_conv_vol.mexa64 M /trunk/spm_dcm_fit.m M /trunk/spm_get_lm.mexa64 M /trunk/spm_global.mexa64 M /trunk/spm_render_vol.mexa64 M /trunk/spm_resels_vol.mexa64 M /trunk/spm_sample_vol.mexa64 M /trunk/spm_slice_vol.mexa64 M /trunk/src/Makefile M /trunk/toolbox/OldNorm/spm_brainwarp.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34.10. ------------------------------------------------------------------------ r6551 | spm | 2015-09-11 17:22:56 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: M /trunk/@file_array/private/init.mexw32 M /trunk/@xmltree/private/xml_findstr.mexw32 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/external/stats/nanmean.mexw32 M /trunk/external/fieldtrip/external/stats/nanstd.mexw32 M /trunk/external/fieldtrip/external/stats/nansum.mexw32 M /trunk/external/fieldtrip/external/stats/nanvar.mexw32 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw32 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw32 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw32 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw32 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw32 M /trunk/external/fieldtrip/forward/private/plgndr.mexw32 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw32 M /trunk/external/fieldtrip/forward/private/routlm.mexw32 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw32 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw32 M /trunk/external/fieldtrip/private/lmoutr.mexw32 M /trunk/external/fieldtrip/private/plgndr.mexw32 M /trunk/external/fieldtrip/private/ptriproj.mexw32 M /trunk/external/fieldtrip/private/routlm.mexw32 M /trunk/external/fieldtrip/private/solid_angle.mexw32 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw32 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw32 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r6552 | spm | 2015-09-11 17:47:52 +0100 (Fri, 11 Sep 2015) | 3 lines Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 A /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/external/stats/nanmean.mexw64 M /trunk/external/fieldtrip/external/stats/nanstd.mexw64 M /trunk/external/fieldtrip/external/stats/nansum.mexw64 M /trunk/external/fieldtrip/external/stats/nanvar.mexw64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw64 M /trunk/external/fieldtrip/forward/private/plgndr.mexw64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw64 M /trunk/external/fieldtrip/forward/private/routlm.mexw64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw64 M /trunk/external/fieldtrip/private/lmoutr.mexw64 M /trunk/external/fieldtrip/private/plgndr.mexw64 M /trunk/external/fieldtrip/private/ptriproj.mexw64 M /trunk/external/fieldtrip/private/routlm.mexw64 M /trunk/external/fieldtrip/private/solid_angle.mexw64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_krutil.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/src/spm_vol_access.c M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 * added exception mechanism on Windows in file2mat.c and spm_vol_access.c * compilation of @gifti\private\zstream.c requires double quotes for CFLAGS="" ------------------------------------------------------------------------ r6553 | guillaume | 2015-09-11 17:54:31 +0100 (Fri, 11 Sep 2015) | 1 line Changed paths: A /trunk/@gifti/private/zstream.mexmaci64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexmaci64 M /trunk/spm_add.mexmaci64 M /trunk/spm_bsplinc.mexmaci64 M /trunk/spm_conv_vol.mexmaci64 M /trunk/spm_get_lm.mexmaci64 M /trunk/spm_global.mexmaci64 M /trunk/spm_render_vol.mexmaci64 M /trunk/spm_resels_vol.mexmaci64 M /trunk/spm_sample_vol.mexmaci64 M /trunk/spm_slice_vol.mexmaci64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexmaci64 Compilation with MATLAB R2009a (7.8), gcc 4.2.1 and Mac OS X 10.6.8. ------------------------------------------------------------------------ r6554 | guillaume | 2015-09-11 18:21:23 +0100 (Fri, 11 Sep 2015) | 3 lines Changed paths: M /trunk/config/spm_run_realign.m M /trunk/config/spm_run_realignunwarp.m Bug fix: Remove frame index in mean image dependency filenames (for 4D files not starting at frame 1). Thanks to Andrea P. ------------------------------------------------------------------------ r6555 | vladimir | 2015-09-14 10:32:06 +0100 (Mon, 14 Sep 2015) | 1 line Changed paths: M /trunk/spm_dcm_fit.m changes to make it possible to use parfor and external DCM routines ------------------------------------------------------------------------ r6556 | guillaume | 2015-09-15 16:42:04 +0100 (Tue, 15 Sep 2015) | 2 lines Changed paths: M /trunk/spm_peb_ppi.m Revert changeset r3271 (mean centering of psychological variable in PPI). ------------------------------------------------------------------------ r6557 | karl | 2015-09-20 13:44:30 +0100 (Sun, 20 Sep 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb_rnd.m M /trunk/spm_dcm_peb_rnd_search.m A /trunk/spm_dcm_peb_test.m M /trunk/tests/DEMO_BMR_PEB.m M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_fs_csd.m Additional seven double Bayesian model comparison routine with hyperpriors based on re-randomisation ------------------------------------------------------------------------ r6558 | gareth | 2015-09-22 18:50:58 +0100 (Tue, 22 Sep 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m A /trunk/config/spm_cfg_eeg_inv_sensorshift.m routine to allow noise to be added to sensor array ------------------------------------------------------------------------ r6559 | karl | 2015-09-22 19:11:08 +0100 (Tue, 22 Sep 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb_test.m re-checking in of new test routine. ------------------------------------------------------------------------ r6560 | karl | 2015-09-23 14:50:43 +0100 (Wed, 23 Sep 2015) | 1 line Changed paths: M /trunk/spm_csd_fmri_mtf.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_priors.m M /trunk/spm_dcm_fmri_results.m M /trunk/spm_fs_fmri_csd.m M /trunk/toolbox/spectral/spm_mar2csd.m Minor revisions to DCM for fMRI (cross spectral density) – largely to emphasise accuracy over complexity and simplify a few things ------------------------------------------------------------------------ r6561 | karl | 2015-09-23 21:41:57 +0100 (Wed, 23 Sep 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb_rnd_search.m M /trunk/spm_dcm_peb_test.m minor adjustments to PEB for DCM randomisation routines ------------------------------------------------------------------------ r6562 | guillaume | 2015-09-25 15:38:17 +0100 (Fri, 25 Sep 2015) | 2 lines Changed paths: M /trunk/config/spm_run_fmri_spec.m Enhancement: first eigenvariate will be added as regressor if VOI.mat files is selected in "multiple regressors" option. ------------------------------------------------------------------------ r6563 | spm | 2015-09-28 12:58:14 +0100 (Mon, 28 Sep 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/README A /trunk/external/fieldtrip/fieldtrip2besa.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m A /trunk/external/fieldtrip/fileio/private/buffer_wait_dat.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/getdimsiz.m M /trunk/external/fieldtrip/fileio/private/read_combined_ds.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_artifact_clip.m M /trunk/external/fieldtrip/ft_artifact_eog.m M /trunk/external/fieldtrip/ft_artifact_jump.m M /trunk/external/fieldtrip/ft_artifact_muscle.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_examplefunction.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_freqdescriptives.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_removetemplateartifact.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_montage.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m A /trunk/external/fieldtrip/plotting/ft_plot_patch.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/ft_select_point.m M /trunk/external/fieldtrip/plotting/ft_select_point3d.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_rereference.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m M /trunk/external/fieldtrip/private/getdimsiz.m M /trunk/external/fieldtrip/private/prepare_freq_matrices.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/univariate2bivariate.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m A /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_channelcombination.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_documentationindex.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_source2sparse.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m update of external/fieldtrip to r10690 ------------------------------------------------------------------------ r6564 | karl | 2015-09-29 09:10:22 +0100 (Tue, 29 Sep 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Further development of habit demos ------------------------------------------------------------------------ r6565 | peter | 2015-09-30 11:42:14 +0100 (Wed, 30 Sep 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/spm_dcm_U.m Fixed problem with spm_dcm_U where 2nd order parametric modulators caused errors, and updated help. ------------------------------------------------------------------------ r6566 | karl | 2015-10-08 11:12:19 +0100 (Thu, 08 Oct 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Further upgrades to habit MDP demo ------------------------------------------------------------------------ r6567 | karl | 2015-10-12 10:29:04 +0100 (Mon, 12 Oct 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m Please cells added to habit (MDP) formation demo ------------------------------------------------------------------------ r6568 | guillaume | 2015-10-13 12:08:34 +0100 (Tue, 13 Oct 2015) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Bug fix: explicit masks with full path in NIDM export. Thanks to Dave K. ------------------------------------------------------------------------ r6569 | karl | 2015-10-14 09:53:24 +0100 (Wed, 14 Oct 2015) | 1 line Changed paths: M /trunk/spm_nlsi_GN.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m upgrade to habit demo ------------------------------------------------------------------------ r6570 | karl | 2015-10-14 18:00:05 +0100 (Wed, 14 Oct 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Continued upgrade of habit demo ------------------------------------------------------------------------ r6571 | volkmar | 2015-10-15 14:18:26 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/matlabbatch/gencode_rvalue.m Use sprintf to generate code for strings containing char(10). ------------------------------------------------------------------------ r6572 | volkmar | 2015-10-15 14:18:28 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/matlabbatch/private/cfg_disp_error.m Add hyperlink to line number if desktop is available. ------------------------------------------------------------------------ r6573 | volkmar | 2015-10-15 14:18:29 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_run_file_filter.m Ignore frame settings. ------------------------------------------------------------------------ r6574 | volkmar | 2015-10-15 14:18:30 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/matlabbatch/private/cfg_disp_error.m Check for usejava('desktop') instead of desktop('inuse'). desktop() crashes if JAVA is disabled, usejava() does not. ------------------------------------------------------------------------ r6575 | volkmar | 2015-10-15 16:22:08 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/spm_platform.m Check for usejava('desktop') instead of desktop('inuse'). desktop() crashes if JAVA is disabled, usejava() does not. ------------------------------------------------------------------------ r6576 | volkmar | 2015-10-15 16:22:09 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/spm_defaults.m Added default prefix for modulated output. ------------------------------------------------------------------------ r6577 | volkmar | 2015-10-15 16:22:11 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/spm_deformations.m Replace hardcoded prefixes in spm_deformations.m with default settings. ------------------------------------------------------------------------ r6578 | volkmar | 2015-10-15 16:22:12 +0100 (Thu, 15 Oct 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_deformations.m M /trunk/config/spm_cfg_norm.m M /trunk/config/spm_run_norm.m Add prefix selection options to Deformations and Normalise batch modules. ------------------------------------------------------------------------ r6579 | karl | 2015-10-18 18:25:54 +0100 (Sun, 18 Oct 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_DP.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Further modifications to habit (MDP) demo ------------------------------------------------------------------------ r6580 | volkmar | 2015-10-19 14:40:33 +0100 (Mon, 19 Oct 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Add newline after warning message. ------------------------------------------------------------------------ r6581 | volkmar | 2015-10-19 14:40:36 +0100 (Mon, 19 Oct 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Fix ASCCONV parsing and document changes. Use regexp to extract ASCCONV section. Ignore ASCCONV version string. Skip field names starting with '_'. These contain currently unused meta-information. ------------------------------------------------------------------------ r6582 | karl | 2015-10-26 10:20:28 +0000 (Mon, 26 Oct 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m Updates to NDP habit demos ------------------------------------------------------------------------ r6583 | volkmar | 2015-10-28 10:30:38 +0000 (Wed, 28 Oct 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_split.m Return a column cellstr with filenames. ------------------------------------------------------------------------ r6584 | vladimir | 2015-10-28 11:24:38 +0000 (Wed, 28 Oct 2015) | 1 line Changed paths: M /trunk/spm_eeg_convert2images.m Bug fix (thanks to Brian) ------------------------------------------------------------------------ r6585 | guillaume | 2015-10-28 16:02:13 +0000 (Wed, 28 Oct 2015) | 1 line Changed paths: M /trunk/spm_provenance.m M /trunk/spm_results_nidm.m Enhancement: use UUIDs and prefixes in NIDM-Results export. ------------------------------------------------------------------------ r6586 | karl | 2015-10-31 12:02:44 +0000 (Sat, 31 Oct 2015) | 1 line Changed paths: A /trunk/spm_nlsi_Newton.m A /trunk/toolbox/DEM/DEM_demo_MDP_fit.m M /trunk/toolbox/DEM/spm_MDP_VB.m MDP inversion scheme added (under development) ------------------------------------------------------------------------ r6587 | karl | 2015-11-02 10:29:49 +0000 (Mon, 02 Nov 2015) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_fit.m A /trunk/spm_dcm_mdp.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_nlsi_Newton.m M /trunk/spm_plot_ci.m M /trunk/toolbox/DEM/DEM_demo_MDP_fit.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/DEM_evidence_accumulation.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Bayesian inversion of Markov decision process models now added ------------------------------------------------------------------------ r6588 | john | 2015-11-03 15:26:38 +0000 (Tue, 03 Nov 2015) | 4 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_dict.mat M /trunk/spm_dicom_dict.txt M /trunk/spm_dicom_essentials.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m * DICOM conversion now recognises GE images as magnitude, phase, real or imaginary (thanks to Michael Mouthon). * Documentation changes for longitudinal toolbox. ------------------------------------------------------------------------ r6589 | guillaume | 2015-11-03 16:01:08 +0000 (Tue, 03 Nov 2015) | 2 lines Changed paths: A /trunk/spm_jsonread.m A /trunk/spm_jsonread.mexa64 A /trunk/spm_jsonread.mexmaci64 A /trunk/spm_jsonread.mexw32 A /trunk/spm_jsonread.mexw64 M /trunk/src/Makefile A /trunk/src/jsmn.c A /trunk/src/jsmn.h A /trunk/src/spm_jsonread.c A /trunk/tests/test_jsonread.m New feature: JSON parser as a C-MEX file (using jsmn). ------------------------------------------------------------------------ r6590 | vladimir | 2015-11-05 16:17:27 +0000 (Thu, 05 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_inv_forward.m Change in FT parameter name to avoid warning. ------------------------------------------------------------------------ r6591 | peter | 2015-11-06 11:18:19 +0000 (Fri, 06 Nov 2015) | 1 line Changed paths: M /trunk/spm_dcm_estimate.m Introduced maxnodes, maxit, hE and hC options. Added warning that a,b,c are ignored if model is already estimated. ------------------------------------------------------------------------ r6592 | guillaume | 2015-11-06 16:20:48 +0000 (Fri, 06 Nov 2015) | 2 lines Changed paths: M /trunk/toolbox/DEM/ADEM_salience.m M /trunk/toolbox/DEM/spm_MDP_game.m M /trunk/toolbox/DEM/spm_MDP_urn.m Enhancements: various small adjustments regarding paths, toolboxes and HG2. ------------------------------------------------------------------------ r6593 | spm | 2015-11-06 18:13:52 +0000 (Fri, 06 Nov 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/besa2fieldtrip.m A /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/edf2fieldtrip.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ama2vol.m M /trunk/external/fieldtrip/fileio/private/find_outermost_boundary.m A /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m A /trunk/external/fieldtrip/fileio/private/getdatfield.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/getdimsiz.m M /trunk/external/fieldtrip/fileio/private/loadama.m M /trunk/external/fieldtrip/fileio/private/parameterselection.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_eyelink_asc.m M /trunk/external/fieldtrip/fileio/private/read_mclust_t.m M /trunk/external/fieldtrip/fileio/private/read_stl.m M /trunk/external/fieldtrip/fileio/private/read_trigger.m A /trunk/external/fieldtrip/fileio/private/read_videomeg_aud.m A /trunk/external/fieldtrip/fileio/private/read_videomeg_vid.m M /trunk/external/fieldtrip/fileio/private/scalingfactor.m M /trunk/external/fieldtrip/fileio/private/tokenize.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_bemcp.m M /trunk/external/fieldtrip/forward/ft_headmodel_concentricspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_dipoli.m M /trunk/external/fieldtrip/forward/ft_headmodel_halfspace.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/ft_headmodel_simbio.m M /trunk/external/fieldtrip/forward/ft_headmodel_singleshell.m M /trunk/external/fieldtrip/forward/ft_headmodel_singlesphere.m M /trunk/external/fieldtrip/forward/ft_headmodel_slab.m M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/ft_sourcedepth.m M /trunk/external/fieldtrip/forward/private/ama2vol.m M /trunk/external/fieldtrip/forward/private/eeg_leadfieldb.m M /trunk/external/fieldtrip/forward/private/find_innermost_boundary.m M /trunk/external/fieldtrip/forward/private/find_outermost_boundary.m A /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/headsurface.m M /trunk/external/fieldtrip/forward/private/icosahedron.m M /trunk/external/fieldtrip/forward/private/icosahedron162.m M /trunk/external/fieldtrip/forward/private/icosahedron42.m M /trunk/external/fieldtrip/forward/private/icosahedron642.m M /trunk/external/fieldtrip/forward/private/inf_medium_leadfield.m M /trunk/external/fieldtrip/forward/private/leadfield_openmeeg.m M /trunk/external/fieldtrip/forward/private/loadama.m M /trunk/external/fieldtrip/forward/private/mesh2edge.m M /trunk/external/fieldtrip/forward/private/scalingfactor.m M /trunk/external/fieldtrip/forward/private/surface_nesting.m M /trunk/external/fieldtrip/forward/private/triangle4pt.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_annotate.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendfreq.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_appendspike.m M /trunk/external/fieldtrip/ft_appendtimelock.m A /trunk/external/fieldtrip/ft_audiovideobrowser.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_channelrepair.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_conjunctionanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_denoise_synthetic.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_examplefunction.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqanalysis_mvar.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_freqcomparison.m M /trunk/external/fieldtrip/ft_freqdescriptives.m M /trunk/external/fieldtrip/ft_freqgrandaverage.m M /trunk/external/fieldtrip/ft_freqinterpolate.m M /trunk/external/fieldtrip/ft_freqsimulation.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_headmovement.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_interpolatenan.m M /trunk/external/fieldtrip/ft_lateralizedpotential.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_networkanalysis.m M /trunk/external/fieldtrip/ft_prepare_bemmodel.m M /trunk/external/fieldtrip/ft_prepare_concentricspheres.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_localspheres.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_prepare_singleshell.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_qualitycheck.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_regressconfound.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_rejectvisual.m M /trunk/external/fieldtrip/ft_removetemplateartifact.m M /trunk/external/fieldtrip/ft_removetmsartifact.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_sensorrealign.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sliceinterp.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_sourcewrite.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_timelockbaseline.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_topoplotTFR.m M /trunk/external/fieldtrip/ft_volumedownsample.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumereslice.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/ft_volumewrite.m M /trunk/external/fieldtrip/inverse/private/find_innermost_boundary.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/inverse/private/scalingfactor.m M /trunk/external/fieldtrip/nutmeg2fieldtrip.m A /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_volume.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/icosahedron.m M /trunk/external/fieldtrip/plotting/private/icosahedron162.m M /trunk/external/fieldtrip/plotting/private/icosahedron642.m M /trunk/external/fieldtrip/plotting/private/mesh2edge.m M /trunk/external/fieldtrip/plotting/private/scalingfactor.m M /trunk/external/fieldtrip/preproc/ft_preproc_dftfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_padding.m M /trunk/external/fieldtrip/preproc/private/filter_with_correction.m A /trunk/external/fieldtrip/private/browse_audiovideo.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/find_innermost_boundary.m M /trunk/external/fieldtrip/private/find_outermost_boundary.m M /trunk/external/fieldtrip/private/fixpos.m A /trunk/external/fieldtrip/private/getdatfield.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/getdimsiz.m M /trunk/external/fieldtrip/private/headsurface.m M /trunk/external/fieldtrip/private/icosahedron.m M /trunk/external/fieldtrip/private/icosahedron162.m M /trunk/external/fieldtrip/private/icosahedron42.m M /trunk/external/fieldtrip/private/icosahedron642.m M /trunk/external/fieldtrip/private/nimh2grad.m M /trunk/external/fieldtrip/private/parameterselection.m M /trunk/external/fieldtrip/private/prepare_headmodel.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/scalingfactor.m M /trunk/external/fieldtrip/private/svdfft.m M /trunk/external/fieldtrip/private/triangle4pt.m M /trunk/external/fieldtrip/spass2fieldtrip.m M /trunk/external/fieldtrip/specest/private/filter_with_correction.m M /trunk/external/fieldtrip/spm2fieldtrip.m M /trunk/external/fieldtrip/statfun/ft_statfun_actvsblT.m M /trunk/external/fieldtrip/statfun/ft_statfun_correlationT.m D /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesF.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFmultivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesregrT.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff_itc.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesF.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesregrT.m D /trunk/external/fieldtrip/statfun/ft_statfun_intersubcorr.m M /trunk/external/fieldtrip/statfun/ft_statfun_mean.m M /trunk/external/fieldtrip/statfun/ft_statfun_pooledT.m A /trunk/external/fieldtrip/trialfun/ft_trialfun_edf.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_datatype_volume.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_fetch_header.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_debug.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m A /trunk/external/fieldtrip/utilities/private/getdatfield.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m M /trunk/external/fieldtrip/utilities/private/icosahedron.m M /trunk/external/fieldtrip/utilities/private/icosahedron42.m M /trunk/external/fieldtrip/utilities/private/parameterselection.m M /trunk/external/fieldtrip/utilities/private/scalingfactor.m M /trunk/external/fieldtrip/utilities/tokenize.m update of external/fieldtrip to r10851 ------------------------------------------------------------------------ r6594 | guillaume | 2015-11-06 18:47:05 +0000 (Fri, 06 Nov 2015) | 2 lines Changed paths: M /trunk/spm_defaults.m M /trunk/spm_hrf.m Refactoring: HRF parameters are now stored in spm_defaults.m. A suggestion from Torben L. ------------------------------------------------------------------------ r6595 | vladimir | 2015-11-10 15:47:18 +0000 (Tue, 10 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_epochs.m Minor bug fix (thanks to Mate) ------------------------------------------------------------------------ r6596 | vladimir | 2015-11-10 15:52:16 +0000 (Tue, 10 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_epochs.m Fix for the last fix ------------------------------------------------------------------------ r6597 | vladimir | 2015-11-11 11:09:49 +0000 (Wed, 11 Nov 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/forward/ft_sourcedepth.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m Critical fixes to avoid the code breaking until next FT update ------------------------------------------------------------------------ r6598 | karl | 2015-11-11 19:48:30 +0000 (Wed, 11 Nov 2015) | 2 lines Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/spm_MDP_DP.m M /trunk/toolbox/DEM/spm_MDP_VB.m Behavioural modelling demo for MDP schemes added to DEM GUI (and other refinements to demos) bug fix to spm_dcm_peb (should not affect other routines) ------------------------------------------------------------------------ r6599 | christophe | 2015-11-12 10:04:08 +0000 (Thu, 12 Nov 2015) | 5 lines Changed paths: M /trunk/@meeg/subsref.m Bug fixes. There were 2 problems with the @meeg/subsref.m function when using online montage functionality with chunks of data accessed larger than the maxMem set. 1/ an index could end up being 0 and the call was crashing further down. A part for the crash, results were still correct and had no consequence on further processing. 2/ when accessing a list of time points, the returned values were NOT correct. If the list was of length N, the *first* N values were returned. This could thus affect further processing. Thanks to Adam Baker for spotting this one! ------------------------------------------------------------------------ r6600 | christophe | 2015-11-12 13:07:41 +0000 (Thu, 12 Nov 2015) | 2 lines Changed paths: M /trunk/@meeg/subsref.m Bug fix for meeg object with online montage. Now properly handling calls with ':' as argument. ------------------------------------------------------------------------ r6601 | guillaume | 2015-11-19 13:55:32 +0000 (Thu, 19 Nov 2015) | 2 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/mvtk_read.m M /trunk/@gifti/private/mvtk_write.m New feature: very partial VTK formatted file reader. ------------------------------------------------------------------------ r6602 | vladimir | 2015-11-20 19:04:49 +0000 (Fri, 20 Nov 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_downsample.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/spm_eeg_downsample.m Added more downsampling methods ------------------------------------------------------------------------ r6603 | guillaume | 2015-11-20 19:53:29 +0000 (Fri, 20 Nov 2015) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Enhancement: update of NIDM-Results export. ------------------------------------------------------------------------ r6604 | guillaume | 2015-11-20 20:19:14 +0000 (Fri, 20 Nov 2015) | 2 lines Changed paths: A /trunk/spm_jsonwrite.m New feature: JSON serialization. ------------------------------------------------------------------------ r6605 | karl | 2015-11-21 20:15:13 +0000 (Sat, 21 Nov 2015) | 1 line Changed paths: A /trunk/spm_dot.m A /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/spm_MDP_VB.m A /trunk/toolbox/DEM/spm_MDP_VB_X.m factorised form of NDP scheme added ------------------------------------------------------------------------ r6606 | karl | 2015-11-22 18:57:07 +0000 (Sun, 22 Nov 2015) | 1 line Changed paths: A /trunk/spm_cross.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Outer product routine added ------------------------------------------------------------------------ r6607 | vladimir | 2015-11-23 11:51:19 +0000 (Mon, 23 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_downsample.m Bug fix. ------------------------------------------------------------------------ r6608 | vladimir | 2015-11-23 13:56:56 +0000 (Mon, 23 Nov 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/forward/ft_average_sens.m Reverting to previous version for now until there is a fix in FT. ------------------------------------------------------------------------ r6609 | guillaume | 2015-11-23 18:52:01 +0000 (Mon, 23 Nov 2015) | 2 lines Changed paths: M /trunk/config/spm_run_dcm_bms.m Enhancement: better checks on DCM BMS inputs. ------------------------------------------------------------------------ r6610 | guillaume | 2015-11-25 17:50:05 +0000 (Wed, 25 Nov 2015) | 4 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/spm_results_nidm.m Enhancements: * update of NIDM-Results export to encode Exporter * minor improvements to JSON serialization. ------------------------------------------------------------------------ r6611 | guillaume | 2015-11-26 18:33:13 +0000 (Thu, 26 Nov 2015) | 2 lines Changed paths: M /trunk/spm_list.m M /trunk/spm_results_nidm.m Bug fix: "current cluster" option not yet implemented for meshes. ------------------------------------------------------------------------ r6612 | vladimir | 2015-11-27 18:43:15 +0000 (Fri, 27 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_specest_mtmconvol.m Minor fix ------------------------------------------------------------------------ r6613 | peter | 2015-11-29 10:56:53 +0000 (Sun, 29 Nov 2015) | 1 line Changed paths: M /trunk/spm_dcm_U.m Minor correction to easy DCM simulation (spm_dcm_U.m no longer requires an existing U structure) ------------------------------------------------------------------------ r6614 | vladimir | 2015-11-30 10:42:02 +0000 (Mon, 30 Nov 2015) | 1 line Changed paths: M /trunk/spm_eeg_downsample.m One more fix attempt ------------------------------------------------------------------------ r6615 | peter | 2015-11-30 12:56:02 +0000 (Mon, 30 Nov 2015) | 1 line Changed paths: M /trunk/spm_dcm_search.m Fix for endogenous DCMs in spm_dcm_search and small performance improvement ------------------------------------------------------------------------ r6616 | spm | 2015-11-30 17:21:28 +0000 (Mon, 30 Nov 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_dipolefitting.m A /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_sensorrealign.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_plot_topo3d.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/ft_select_point3d.m M /trunk/external/fieldtrip/plotting/ft_uilayout.m A /trunk/external/fieldtrip/plotting/private/fixpos.m A /trunk/external/fieldtrip/plotting/private/icosahedron42.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/external/fieldtrip/private/fdr.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/freq2timelock.m M /trunk/external/fieldtrip/private/prepare_mesh_hexahedral.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/utilities/ft_compile_mex.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_trackconfig.m update of external/fieldtrip to r10953 ------------------------------------------------------------------------ r6617 | guillaume | 2015-11-30 19:21:42 +0000 (Mon, 30 Nov 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_results.m M /trunk/config/spm_run_results.m M /trunk/spm_getSPM.m M /trunk/spm_results_nidm.m Enhancement: add conjunction number as input parameter in "Results report" module. ------------------------------------------------------------------------ r6618 | spm | 2015-12-01 16:25:38 +0000 (Tue, 01 Dec 2015) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/@gifti/saveas.m M /trunk/@meeg/trialtag.m M /trunk/config/spm_cfg_eeg_inv_sensorshift.m M /trunk/spm_eeg_invert_prepro.m M /trunk/spm_results_nidm.m M /trunk/src/spm_jsonread.c Doc: Tabs & SVN properties. ------------------------------------------------------------------------ r6619 | guillaume | 2015-12-01 19:20:22 +0000 (Tue, 01 Dec 2015) | 2 lines Changed paths: M /trunk/spm_getSPM.m M /trunk/spm_list.m Bug fix: fix critical thresholds when voxel-wise FDR is used. Thanks to Tom N. ------------------------------------------------------------------------ r6620 | peter | 2015-12-02 17:35:13 +0000 (Wed, 02 Dec 2015) | 1 line Changed paths: M /trunk/spm_dcm_bpa.m Minor buxfix for when spm_dcm_bpa.m is called with multiple models per subject ------------------------------------------------------------------------ r6621 | spm | 2015-12-02 18:04:18 +0000 (Wed, 02 Dec 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/ft_prepare_bemmodel.m M /trunk/external/fieldtrip/plotting/private/fixpos.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/fixpos.m update of external/fieldtrip to r10960 ------------------------------------------------------------------------ r6622 | vladimir | 2015-12-03 11:54:13 +0000 (Thu, 03 Dec 2015) | 1 line Changed paths: M /trunk/@meeg/fiducials.m M /trunk/@meeg/private/checkmeeg.m A /trunk/@meeg/private/fixpnt.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/spm_eeg_merge.m Fix for the ft_average_sens issue ------------------------------------------------------------------------ r6623 | guillaume | 2015-12-03 18:38:08 +0000 (Thu, 03 Dec 2015) | 2 lines Changed paths: M /trunk/@slover/add_blobs.m M /trunk/@slover/add_matrix.m M /trunk/@slover/add_spm.m M /trunk/@slover/display.m M /trunk/@slover/fill_defaults.m M /trunk/@slover/get_pos.m M /trunk/@slover/paint.m M /trunk/@slover/point_vals.m M /trunk/@slover/print_fig.m M /trunk/@slover/private/mars_struct.m M /trunk/@slover/private/pr_basic_ui.m M /trunk/@slover/private/pr_blobs2vol.m M /trunk/@slover/private/pr_get_spm_results.m M /trunk/@slover/private/pr_getcmap.m M /trunk/@slover/private/pr_matrix2vol.m M /trunk/@slover/private/pr_scaletocmap.m M /trunk/@slover/private/pr_volmaxmin.m M /trunk/@slover/slover.m M /trunk/@slover/subsasgn.m M /trunk/@slover/subsref.m Doc: reformat @slover. ------------------------------------------------------------------------ r6624 | guillaume | 2015-12-03 18:58:05 +0000 (Thu, 03 Dec 2015) | 2 lines Changed paths: M /trunk/spm_load.m New feature: rewrote spm_load to handle delimiter-separated values files (csv,tsv). ------------------------------------------------------------------------ r6625 | vladimir | 2015-12-03 21:49:24 +0000 (Thu, 03 Dec 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_spatial_confounds.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/spm_eeg_grandmean.m M /trunk/spm_eeg_spatial_confounds.m Minor fixes ------------------------------------------------------------------------ r6626 | volkmar | 2015-12-04 08:20:26 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/src/create_cfg_cfg_basicio.m Fix mlint hints. ------------------------------------------------------------------------ r6627 | volkmar | 2015-12-04 08:20:49 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_cfg_basicio.m M /trunk/matlabbatch/cfg_basicio/cfg_cfg_basicio_def.m A /trunk/matlabbatch/cfg_basicio/cfg_run_gunzip_files.m A /trunk/matlabbatch/cfg_basicio/cfg_run_gzip_files.m M /trunk/matlabbatch/cfg_basicio/cfg_vout_gunzip_files.m M /trunk/matlabbatch/cfg_basicio/cfg_vout_gzip_files.m M /trunk/matlabbatch/cfg_basicio/src/01_file_dir_ops/02_file_ops/batch_basicio_02_gzip_files.m M /trunk/matlabbatch/cfg_basicio/src/01_file_dir_ops/02_file_ops/batch_basicio_03_gunzip_files.m Add option to place g(un)zipped files in different folder. Also ask whether to keep the originals. ------------------------------------------------------------------------ r6628 | volkmar | 2015-12-04 08:20:51 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_run_gunzip_files.m M /trunk/matlabbatch/cfg_basicio/cfg_run_gzip_files.m Add missing check for empty folder. ------------------------------------------------------------------------ r6629 | volkmar | 2015-12-04 08:20:52 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_cfg_basicio_def.m Manually edited defaults - needs to be redone in case of regenerated basicio. ------------------------------------------------------------------------ r6630 | spm | 2015-12-04 12:44:43 +0000 (Fri, 04 Dec 2015) | 2 lines Changed paths: M /trunk/@meeg/private/fixpnt.m Doc: SVN properties. ------------------------------------------------------------------------ r6631 | spm | 2015-12-04 13:17:45 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: D /trunk/external/fieldtrip/external/stats/hline.m M /trunk/external/fieldtrip/external/stats/nanmean.m M /trunk/external/fieldtrip/external/stats/nanstd.m M /trunk/external/fieldtrip/external/stats/nansum.m A /trunk/external/fieldtrip/external/stats/private A /trunk/external/fieldtrip/external/stats/private/size_equal.m D /trunk/external/fieldtrip/external/stats/randsample.m D /trunk/external/fieldtrip/external/stats/size_equal.m M /trunk/external/fieldtrip/external/stats/tinv.m D /trunk/external/fieldtrip/external/stats/vline.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m update of external/fieldtrip to r10965 ------------------------------------------------------------------------ r6632 | volkmar | 2015-12-04 14:10:25 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_cfg_basicio_def.m Changed outdir default to {''}. ------------------------------------------------------------------------ r6633 | vladimir | 2015-12-04 17:09:24 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invert.m M /trunk/spm_eeg_inv_custom_ui.m M /trunk/spm_eeg_invert.m Added an option to restrict inversions with mask images ------------------------------------------------------------------------ r6634 | vladimir | 2015-12-04 17:09:52 +0000 (Fri, 04 Dec 2015) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_img2maps.m Fixing the tool to make it work again ------------------------------------------------------------------------ r6635 | vladimir | 2015-12-05 23:13:24 +0000 (Sat, 05 Dec 2015) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_img2maps.m A /trunk/toolbox/MEEGtools/spm_headplot.m Added additional plotting styles ------------------------------------------------------------------------ r6636 | vladimir | 2015-12-05 23:28:50 +0000 (Sat, 05 Dec 2015) | 1 line Changed paths: M /trunk/spm_eeg_invert.m Bug fix ------------------------------------------------------------------------ r6637 | guillaume | 2015-12-08 18:12:51 +0000 (Tue, 08 Dec 2015) | 2 lines Changed paths: M /trunk/spm_mesh_render.m New feature: allow to change geometry during mesh rendering. ------------------------------------------------------------------------ r6638 | guillaume | 2015-12-10 15:43:57 +0000 (Thu, 10 Dec 2015) | 2 lines Changed paths: M /trunk/spm_eeg_planarchannelset.m Refactoring: code simplification. ------------------------------------------------------------------------ r6639 | volkmar | 2015-12-11 09:50:49 +0000 (Fri, 11 Dec 2015) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Extract fields from SIEMENS ASCCONV section more safely. ------------------------------------------------------------------------ r6640 | volkmar | 2015-12-11 10:17:09 +0000 (Fri, 11 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/gencode_rvalue.m Escape char(0), char(9), char(10) and sprintf special chars \ and %%. ------------------------------------------------------------------------ r6641 | volkmar | 2015-12-11 10:17:11 +0000 (Fri, 11 Dec 2015) | 1 line Changed paths: M /trunk/matlabbatch/private/cfg_mlbatch_defaults.m M /trunk/matlabbatch/private/inputdlg.m M /trunk/matlabbatch/private/listdlg.m Remove nargchk from code. ------------------------------------------------------------------------ r6642 | peter | 2015-12-11 16:52:29 +0000 (Fri, 11 Dec 2015) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_bms.m Typo correction - thanks to Roni Tibon ------------------------------------------------------------------------ r6643 | guillaume | 2015-12-11 16:57:25 +0000 (Fri, 11 Dec 2015) | 2 lines Changed paths: M /trunk/spm_uc_FDR.m Enhancement: mesh-aware vertex-wise FDR. ------------------------------------------------------------------------ r6644 | karl | 2015-12-12 14:53:37 +0000 (Sat, 12 Dec 2015) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_api_erp.fig M /trunk/toolbox/dcm_meeg/spm_api_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp_results.m ------------------------------------------------------------------------ r6645 | karl | 2015-12-12 14:55:22 +0000 (Sat, 12 Dec 2015) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m revision to spm_dcm_peb.m to handle rank deficient priors ------------------------------------------------------------------------ r6646 | guillaume | 2015-12-14 19:00:26 +0000 (Mon, 14 Dec 2015) | 1 line Changed paths: M /trunk/config/spm_run_results.m M /trunk/spm_load.m M /trunk/spm_provenance.m M /trunk/spm_results_nidm.m M /trunk/spm_results_ui.m Enhancement: update of NIDM-Results export to 1.2.0. ------------------------------------------------------------------------ r6647 | guillaume | 2015-12-14 19:12:54 +0000 (Mon, 14 Dec 2015) | 2 lines Changed paths: M /trunk/spm_results_ui.m Bug fix: revert some changes from r6646. ------------------------------------------------------------------------ r6648 | guillaume | 2015-12-14 19:13:47 +0000 (Mon, 14 Dec 2015) | 2 lines Changed paths: M /trunk/config/spm_run_results.m Bug fix: revert some changes from r6646. ------------------------------------------------------------------------ r6649 | vladimir | 2015-12-17 14:48:15 +0000 (Thu, 17 Dec 2015) | 1 line Changed paths: M /trunk/spm_eeg_convert2images.m Allowed logarithmic frequency scale ------------------------------------------------------------------------ r6650 | vladimir | 2015-12-17 14:48:43 +0000 (Thu, 17 Dec 2015) | 1 line Changed paths: M /trunk/spm_robust_average.m Added handling of Inf's ------------------------------------------------------------------------ r6651 | spm | 2015-12-18 12:45:04 +0000 (Fri, 18 Dec 2015) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m A /trunk/external/fieldtrip/fileio/private/read_besa_besa.m A /trunk/external/fieldtrip/fileio/private/read_besa_besa_header.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirsdata.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirsevent.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirshdr.m A /trunk/external/fieldtrip/fileio/private/read_tobii_tsv.m M /trunk/external/fieldtrip/fileio/private/read_trigger.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/ft_appendfreq.m M /trunk/external/fieldtrip/ft_appendtimelock.m A /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_stratify.m A /trunk/external/fieldtrip/inverse/harmony.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m A /trunk/external/fieldtrip/inverse/private/mesh_laplacian.m A /trunk/external/fieldtrip/inverse/private/mesh_spectrum.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_topo3d.m M /trunk/external/fieldtrip/preproc/ft_preproc_dftfilter.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/findcluster.m A /trunk/external/fieldtrip/private/mesh_laplacian.m A /trunk/external/fieldtrip/private/mesh_spectrum.m M /trunk/external/fieldtrip/private/moviefunction.m A /trunk/external/fieldtrip/private/statistics_wrapper.m M /trunk/external/fieldtrip/private/unparcellate.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/private/unparcellate.m update of external/fieldtrip to r11031 ------------------------------------------------------------------------ r6652 | karl | 2015-12-21 10:51:54 +0000 (Mon, 21 Dec 2015) | 1 line Changed paths: M /trunk/spm_dot.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Active inference for MDP scheme this with factorization of hidden states and outcomes ------------------------------------------------------------------------ r6653 | vladimir | 2015-12-22 09:32:06 +0000 (Tue, 22 Dec 2015) | 1 line Changed paths: M /trunk/spm_eeg_convert2images.m Bug fix ------------------------------------------------------------------------ r6654 | spm | 2015-12-22 12:55:36 +0000 (Tue, 22 Dec 2015) | 2 lines Changed paths: M /trunk/spm_bms_anova_img.m M /trunk/spm_cross.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_csd_DEM.m M /trunk/spm_dot.m M /trunk/spm_gn_fmin.m M /trunk/spm_phase_shuffle.m M /trunk/spm_t2z.m M /trunk/src/spm_krutil.c mlint: small adjustments. ------------------------------------------------------------------------ r6655 | karl | 2015-12-23 20:21:27 +0000 (Wed, 23 Dec 2015) | 1 line Changed paths: M /trunk/spm_dot.m M /trunk/spm_softmax.m M /trunk/toolbox/DEM/ADEM_eyeblink.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_fit.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m A /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/FEP_Manifold.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Addition of MDP visual search to DEM toolbox ------------------------------------------------------------------------ r6656 | guillaume | 2015-12-24 16:49:52 +0000 (Thu, 24 Dec 2015) | 2 lines Changed paths: M /trunk/config/spm_cfg_reorient.m M /trunk/spm_atlas.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_csd_DEM.m M /trunk/spm_dot.m M /trunk/spm_jobman.m M /trunk/spm_mesh_calc.m M /trunk/spm_orthviews.m M /trunk/spm_type.m M /trunk/spm_write_residuals.m M /trunk/toolbox/DEM/spm_MDP_game.m M /trunk/toolbox/FieldMap/FieldMap_Run.m M /trunk/toolbox/FieldMap/pm_diff.m Doc: minor changes throughout. ------------------------------------------------------------------------ r6657 | karl | 2015-12-31 17:59:31 +0000 (Thu, 31 Dec 2015) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m A /trunk/toolbox/DEM/MDP_search_graphics.mat M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Completion of MDP visual search demo and mean field version of MDP active inference scheme ------------------------------------------------------------------------ r6658 | guillaume | 2016-01-04 18:33:19 +0000 (Mon, 04 Jan 2016) | 2 lines Changed paths: M /trunk/config/spm_run_results.m Enhancement: handle conjunctions and mesh data in Results Report's Write images. ------------------------------------------------------------------------ r6659 | spm | 2016-01-06 15:55:44 +0000 (Wed, 06 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m A /trunk/external/fieldtrip/fileio/private/ft_scalingfactor.m D /trunk/external/fieldtrip/fileio/private/scalingfactor.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m A /trunk/external/fieldtrip/forward/private/ft_scalingfactor.m D /trunk/external/fieldtrip/forward/private/scalingfactor.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/inverse/dipole_fit.m A /trunk/external/fieldtrip/inverse/private/ft_scalingfactor.m D /trunk/external/fieldtrip/inverse/private/scalingfactor.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m A /trunk/external/fieldtrip/plotting/private/ft_scalingfactor.m D /trunk/external/fieldtrip/plotting/private/scalingfactor.m D /trunk/external/fieldtrip/private/scalingfactor.m M /trunk/external/fieldtrip/private/splint.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m A /trunk/external/fieldtrip/utilities/ft_scalingfactor.m D /trunk/external/fieldtrip/utilities/private/scalingfactor.m update of external/fieldtrip to r11040 ------------------------------------------------------------------------ r6660 | guillaume | 2016-01-06 17:49:19 +0000 (Wed, 06 Jan 2016) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/LICENCE.txt M /trunk/README.txt M /trunk/help/index.html M /trunk/spm_Menu.fig Doc: mention 2016. ------------------------------------------------------------------------ r6661 | spm | 2016-01-07 18:08:21 +0000 (Thu, 07 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/private/ft_scalingfactor.m M /trunk/external/fieldtrip/forward/private/ft_scalingfactor.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/inverse/private/ft_scalingfactor.m M /trunk/external/fieldtrip/plotting/private/ft_scalingfactor.m M /trunk/external/fieldtrip/utilities/ft_scalingfactor.m update of external/fieldtrip to r11044 ------------------------------------------------------------------------ r6662 | adeel | 2016-01-08 15:20:02 +0000 (Fri, 08 Jan 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_fs_fmri_csd.m Change default freq range for CSD from [1/128 1/(2*TR)] --> [1/128 0.1] and other minor refinements ------------------------------------------------------------------------ r6663 | vladimir | 2016-01-08 16:45:32 +0000 (Fri, 08 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_fix_ctf_headloc.m Added 'mark' option ------------------------------------------------------------------------ r6664 | guillaume | 2016-01-08 18:57:06 +0000 (Fri, 08 Jan 2016) | 2 lines Changed paths: A /trunk/man/dcm_rs A /trunk/man/dcm_rs/Fig1.png A /trunk/man/dcm_rs/Fig2.png A /trunk/man/dcm_rs/Fig3.png A /trunk/man/dcm_rs/dcm_mod_full.png A /trunk/man/dcm_rs/dcm_rs.tex M /trunk/man/manual.pdf M /trunk/man/manual.tex Doc: new chapter on spectral DCM by Adeel. ------------------------------------------------------------------------ r6665 | karl | 2016-01-08 21:05:13 +0000 (Fri, 08 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m A /trunk/toolbox/DEM/spm_MDP_check.m Reading demo added to MDP schemes ------------------------------------------------------------------------ r6666 | adeel | 2016-01-09 16:05:41 +0000 (Sat, 09 Jan 2016) | 1 line Changed paths: M /trunk/man/biblio/methods_group.bib M /trunk/man/dcm_rs/dcm_rs.tex spDCM biblio update and some other minor fixes ------------------------------------------------------------------------ r6667 | spm | 2016-01-11 12:12:06 +0000 (Mon, 11 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_comp.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_dip.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_mvar.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_spike.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_findcfg.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_headcoordinates.m M /trunk/external/fieldtrip/fileio/private/ft_scalingfactor.m M /trunk/external/fieldtrip/fileio/private/ft_warp_apply.m M /trunk/external/fieldtrip/fileio/private/hasyokogawa.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_headmodel_fns.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_getopt.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_headcoordinates.m M /trunk/external/fieldtrip/forward/private/ft_scalingfactor.m M /trunk/external/fieldtrip/forward/private/ft_warp_apply.m M /trunk/external/fieldtrip/forward/private/hasyokogawa.m M /trunk/external/fieldtrip/ft_audiovideobrowser.m M /trunk/external/fieldtrip/inverse/private/ft_getopt.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_scalingfactor.m M /trunk/external/fieldtrip/inverse/private/hasyokogawa.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_volume.m M /trunk/external/fieldtrip/plotting/private/ft_getopt.m M /trunk/external/fieldtrip/plotting/private/ft_scalingfactor.m M /trunk/external/fieldtrip/plotting/private/ft_warp_apply.m M /trunk/external/fieldtrip/specest/private/ft_getopt.m M /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_cfg2keyval.m M /trunk/external/fieldtrip/utilities/ft_channelcombination.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_checkopt.m M /trunk/external/fieldtrip/utilities/ft_compile_mex.m M /trunk/external/fieldtrip/utilities/ft_convert_grad.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_comp.m M /trunk/external/fieldtrip/utilities/ft_datatype_dip.m M /trunk/external/fieldtrip/utilities/ft_datatype_freq.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_mvar.m M /trunk/external/fieldtrip/utilities/ft_datatype_parcellation.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_datatype_spike.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_datatype_volume.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_documentationindex.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_fetch_event.m M /trunk/external/fieldtrip/utilities/ft_fetch_header.m M /trunk/external/fieldtrip/utilities/ft_findcfg.m M /trunk/external/fieldtrip/utilities/ft_getopt.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_headcoordinates.m M /trunk/external/fieldtrip/utilities/ft_scalingfactor.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_setopt.m M /trunk/external/fieldtrip/utilities/ft_source2grid.m M /trunk/external/fieldtrip/utilities/ft_struct2double.m M /trunk/external/fieldtrip/utilities/ft_struct2single.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/ft_warp_apply.m M /trunk/external/fieldtrip/utilities/ft_warp_error.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/ft_findcfg.m update of external/fieldtrip to r11053 ------------------------------------------------------------------------ r6668 | guillaume | 2016-01-11 15:39:43 +0000 (Mon, 11 Jan 2016) | 2 lines Changed paths: M /trunk/man/biblio/methods_group.bib M /trunk/man/dcm_rs/dcm_rs.tex M /trunk/man/manual.pdf Doc: update PDF manual. ------------------------------------------------------------------------ r6669 | guillaume | 2016-01-11 15:51:06 +0000 (Mon, 11 Jan 2016) | 2 lines Changed paths: A /trunk/toolbox/MEEGtools/spm_eeg_headplot.m (from /trunk/toolbox/MEEGtools/spm_headplot.m:6667) M /trunk/toolbox/MEEGtools/spm_eeg_img2maps.m D /trunk/toolbox/MEEGtools/spm_headplot.m Refactoring: rename function + SVN properties. ------------------------------------------------------------------------ r6670 | adeel | 2016-01-11 17:28:35 +0000 (Mon, 11 Jan 2016) | 1 line Changed paths: M /trunk/man/dcm_rs/dcm_rs.tex PCC coordinates are corrected (thanks Peter!) with few other minor changes! ------------------------------------------------------------------------ r6671 | peter | 2016-01-12 12:01:21 +0000 (Tue, 12 Jan 2016) | 1 line Changed paths: A /trunk/spm_dcm_fmri_csd_results.m D /trunk/spm_dcm_fmri_results.m M /trunk/spm_dcm_review.m Minor fixes to DCM CSD (fMRI) review panel including rename of spm_dcm_fmri_results.m to spm_dcm_fmri_csd_results.m ------------------------------------------------------------------------ r6672 | karl | 2016-01-12 12:28:31 +0000 (Tue, 12 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m M /trunk/toolbox/DEM/spm_MDP_check.m Further development of Reading DEM demo ------------------------------------------------------------------------ r6673 | guillaume | 2016-01-12 17:23:32 +0000 (Tue, 12 Jan 2016) | 2 lines Changed paths: M /trunk/spm_dcm_fmri_csd_results.m Doc: SVN properties. ------------------------------------------------------------------------ r6674 | guillaume | 2016-01-12 17:26:19 +0000 (Tue, 12 Jan 2016) | 2 lines Changed paths: M /trunk/man/manual.pdf Doc: new compilation of the PDF manual. ------------------------------------------------------------------------ r6675 | guillaume | 2016-01-12 18:22:29 +0000 (Tue, 12 Jan 2016) | 2 lines Changed paths: M /trunk/spm_check_installation.m Enhancement: add "mci" in the list of official toolboxes. ------------------------------------------------------------------------ r6676 | guillaume | 2016-01-13 14:37:14 +0000 (Wed, 13 Jan 2016) | 1 line Changed paths: M /trunk/spm_results_nidm.m Bug fix: NIDM-Results export for conjunctions. ------------------------------------------------------------------------ r6677 | guillaume | 2016-01-14 15:00:06 +0000 (Thu, 14 Jan 2016) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Enhancements: minor adjustments for NIDM-Results 1.2.0 - many thanks to Camille M. ------------------------------------------------------------------------ r6678 | guillaume | 2016-01-14 18:23:33 +0000 (Thu, 14 Jan 2016) | 2 lines Changed paths: M /trunk/spm_mesh_resels.m M /trunk/spm_spm.m Enhancement: rescaling taking into account the number of residuals used. ------------------------------------------------------------------------ r6679 | spm | 2016-01-15 12:28:04 +0000 (Fri, 15 Jan 2016) | 1 line Changed paths: A /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/private/write_brainvision_eeg.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/utilities/copyfields.m A /trunk/external/fieldtrip/utilities/renamefields.m update of external/fieldtrip to r11063 ------------------------------------------------------------------------ r6680 | spm | 2016-01-15 13:13:22 +0000 (Fri, 15 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m update of external/fieldtrip to r11064 ------------------------------------------------------------------------ r6681 | guillaume | 2016-01-15 13:21:00 +0000 (Fri, 15 Jan 2016) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Bug fix: another minor fix for conjunctions in NIDM-Results 1.2.0 export. ------------------------------------------------------------------------ r6682 | vladimir | 2016-01-15 15:52:00 +0000 (Fri, 15 Jan 2016) | 1 line Changed paths: M /trunk/@meeg/private/fixpnt.m A /trunk/spm_eeg_fixpnt.m M /trunk/spm_eeg_inv_mesh.m bugfix - yet another pnt/pos problem fix ------------------------------------------------------------------------ r6683 | guillaume | 2016-01-15 16:15:32 +0000 (Fri, 15 Jan 2016) | 2 lines Changed paths: M /trunk/spm_eeg_fixpnt.m Bug fix: fix typo on function name. ------------------------------------------------------------------------ r6684 | guillaume | 2016-01-15 16:30:24 +0000 (Fri, 15 Jan 2016) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.2. ------------------------------------------------------------------------ r6686 | vladimir | 2016-01-20 14:49:15 +0000 (Wed, 20 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/spm_eeg_artefact_heartbeat.m M /trunk/spm_eeg_prep.m Minor fixes ------------------------------------------------------------------------ r6687 | vladimir | 2016-01-22 10:55:37 +0000 (Fri, 22 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/spm_eeg_inv_checkdatareg.m Bug fix with sensor plotting ------------------------------------------------------------------------ r6688 | john | 2016-01-22 16:16:38 +0000 (Fri, 22 Jan 2016) | 3 lines Changed paths: M /trunk/src/shoot_regularisers.c M /trunk/src/spm_diffeo.c Fixed a nasty bug. spm_diffeo.mex* will need recompiling. ------------------------------------------------------------------------ r6689 | vladimir | 2016-01-25 10:24:07 +0000 (Mon, 25 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/read_neuromag_hc.m Yet another pnt/pos problem (thanks to Rik) ------------------------------------------------------------------------ r6690 | guillaume | 2016-01-25 12:32:45 +0000 (Mon, 25 Jan 2016) | 2 lines Changed paths: M /trunk/spm_diffeo.mexa64 M /trunk/spm_jsonread.mexa64 M /trunk/spm_krutil.mexa64 M /trunk/src/spm_jsonread.c New compilation on 64bit Linux following r6688. ------------------------------------------------------------------------ r6691 | gareth | 2016-01-25 13:58:05 +0000 (Mon, 25 Jan 2016) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m added correction factor for number of temporal modes ------------------------------------------------------------------------ r6692 | guillaume | 2016-01-25 14:49:28 +0000 (Mon, 25 Jan 2016) | 2 lines Changed paths: M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_diffeo.mexw32 M /trunk/spm_diffeo.mexw64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_jsonread.mexw32 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexmaci64 M /trunk/spm_krutil.mexw32 M /trunk/spm_krutil.mexw64 New compilation on 32/64bit Windows and 64bit Mac following r6688. ------------------------------------------------------------------------ r6693 | guillaume | 2016-01-25 19:14:47 +0000 (Mon, 25 Jan 2016) | 3 lines Changed paths: M /trunk/spm_contrasts.m M /trunk/spm_spm.m Enhancement: make sure a valid field name is used. Further change should look for a SurfaceID entry in the metadata list. ------------------------------------------------------------------------ r6694 | guillaume | 2016-01-26 17:09:11 +0000 (Tue, 26 Jan 2016) | 3 lines Changed paths: M /trunk/spm_mesh_get_lm.m A /trunk/spm_mesh_polyhedron.m M /trunk/spm_mesh_utils.mexa64 M /trunk/src/spm_mesh_utils.c A /trunk/tests/test_spm_mesh_adjacency.m A /trunk/tests/test_spm_mesh_get_lm.m A /trunk/tests/test_spm_mesh_neighbours.m Bug fix: initialise to 0 after calling mxRealloc in spm_mesh_utils.c. Enhancement: attempt at a faster local maxima identification. ------------------------------------------------------------------------ r6695 | peter | 2016-01-27 10:51:26 +0000 (Wed, 27 Jan 2016) | 1 line Changed paths: M /trunk/config/spm_cfg.m M /trunk/config/spm_cfg_dcm_fmri.m A /trunk/config/spm_cfg_dcm_peb.m A /trunk/spm_dcm_load.m M /trunk/spm_dcm_peb.m A /trunk/spm_dcm_peb_review.m First commit of the second level DCM (PEB) GUI. Includes batch for estimation and PEB model spec, and a PEB review window. ------------------------------------------------------------------------ r6696 | spm | 2016-01-27 13:03:33 +0000 (Wed, 27 Jan 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/private/blockwise_conditionalgranger.m M /trunk/external/fieldtrip/connectivity/private/det2x2.m M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/connectivity/private/getsubfield.m M /trunk/external/fieldtrip/connectivity/private/inv2x2.m M /trunk/external/fieldtrip/connectivity/private/issubfield.m M /trunk/external/fieldtrip/connectivity/private/mtimes2x2.m M /trunk/external/fieldtrip/connectivity/private/rmsubfield.m M /trunk/external/fieldtrip/connectivity/private/sandwich2x2.m M /trunk/external/fieldtrip/connectivity/private/setsubfield.m M /trunk/external/fieldtrip/connectivity/private/standardise.m M /trunk/external/fieldtrip/fieldtrip2besa.m A /trunk/external/fieldtrip/fieldtrip2ctf.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_poll_buffer.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/private/appendevent.m M /trunk/external/fieldtrip/fileio/private/avw_hdr_read.m M /trunk/external/fieldtrip/fileio/private/avw_img_read.m M /trunk/external/fieldtrip/fileio/private/bigendian.m M /trunk/external/fieldtrip/fileio/private/bti2grad.m M /trunk/external/fieldtrip/fileio/private/cstructdecode.m M /trunk/external/fieldtrip/fileio/private/ctf2grad.m M /trunk/external/fieldtrip/fileio/private/fif2grad.m M /trunk/external/fieldtrip/fileio/private/filetype_check_extension.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/filetype_check_uri.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_vol.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/getsubfield.m M /trunk/external/fieldtrip/fileio/private/issubfield.m M /trunk/external/fieldtrip/fileio/private/littleendian.m M /trunk/external/fieldtrip/fileio/private/mne2grad.m M /trunk/external/fieldtrip/fileio/private/neuralynx_timestamp.m M /trunk/external/fieldtrip/fileio/private/read_besa_besa.m D /trunk/external/fieldtrip/fileio/private/read_besa_besa_header.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shm.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_bin.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nev.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nse.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nst.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nts.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ntt.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ttl.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_hc.m M /trunk/external/fieldtrip/fileio/private/read_tobii_tsv.m M /trunk/external/fieldtrip/fileio/private/rmsubfield.m A /trunk/external/fieldtrip/fileio/private/rotate.m M /trunk/external/fieldtrip/fileio/private/setsubfield.m M /trunk/external/fieldtrip/fileio/private/timestamp_neuralynx.m M /trunk/external/fieldtrip/fileio/private/timestamp_plexon.m A /trunk/external/fieldtrip/fileio/private/translate.m M /trunk/external/fieldtrip/fileio/private/undobalancing.m M /trunk/external/fieldtrip/fileio/private/write_brainvision_eeg.m M /trunk/external/fieldtrip/fileio/private/write_ctf_shm.m M /trunk/external/fieldtrip/fileio/private/write_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/write_plexon_nex.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/forward/private/ft_getopt.m M /trunk/external/fieldtrip/forward/private/ft_warning.m M /trunk/external/fieldtrip/forward/private/getsubfield.m M /trunk/external/fieldtrip/forward/private/inf_medium_leadfield.m M /trunk/external/fieldtrip/forward/private/issubfield.m M /trunk/external/fieldtrip/forward/private/leadsphere_all.m M /trunk/external/fieldtrip/forward/private/legs.m M /trunk/external/fieldtrip/forward/private/magnetic_dipole.m M /trunk/external/fieldtrip/forward/private/meg_forward.m M /trunk/external/fieldtrip/forward/private/meg_ini.m M /trunk/external/fieldtrip/forward/private/rmsubfield.m M /trunk/external/fieldtrip/forward/private/setsubfield.m M /trunk/external/fieldtrip/forward/private/transfer_elec.m M /trunk/external/fieldtrip/forward/private/undobalancing.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_freqsimulation.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/private/find_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_getopt.m M /trunk/external/fieldtrip/inverse/private/getsubfield.m M /trunk/external/fieldtrip/inverse/private/issubfield.m M /trunk/external/fieldtrip/loreta2fieldtrip.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/fixpos.m M /trunk/external/fieldtrip/plotting/private/ft_getopt.m M /trunk/external/fieldtrip/plotting/private/ft_warning.m M /trunk/external/fieldtrip/plotting/private/getsubfield.m M /trunk/external/fieldtrip/plotting/private/issubfield.m M /trunk/external/fieldtrip/plotting/private/rmsubfield.m M /trunk/external/fieldtrip/plotting/private/setsubfield.m M /trunk/external/fieldtrip/plotting/private/undobalancing.m M /trunk/external/fieldtrip/preproc/private/ft_warning.m M /trunk/external/fieldtrip/preproc/private/print_once.m M /trunk/external/fieldtrip/private/atlas_lookup.m M /trunk/external/fieldtrip/private/avw_hdr_make.m M /trunk/external/fieldtrip/private/avw_img_write.m A /trunk/external/fieldtrip/private/checkpos.m M /trunk/external/fieldtrip/private/ctf2grad.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/getsubfield.m M /trunk/external/fieldtrip/private/issubfield.m M /trunk/external/fieldtrip/private/read_besa_mul.m M /trunk/external/fieldtrip/private/read_besa_src.m M /trunk/external/fieldtrip/private/read_besa_tfc.m M /trunk/external/fieldtrip/private/read_labview_dtlg.m M /trunk/external/fieldtrip/private/rmsubfield.m M /trunk/external/fieldtrip/private/setsubfield.m M /trunk/external/fieldtrip/private/standardise.m M /trunk/external/fieldtrip/private/undobalancing.m M /trunk/external/fieldtrip/specest/private/alpha_taper.m M /trunk/external/fieldtrip/specest/private/ft_getopt.m M /trunk/external/fieldtrip/specest/private/ft_warning.m M /trunk/external/fieldtrip/specest/private/getsubfield.m M /trunk/external/fieldtrip/specest/private/issubfield.m M /trunk/external/fieldtrip/specest/private/rmsubfield.m M /trunk/external/fieldtrip/specest/private/setsubfield.m M /trunk/external/fieldtrip/spm2fieldtrip.m M /trunk/external/fieldtrip/src/det2x2.m M /trunk/external/fieldtrip/src/inv2x2.m M /trunk/external/fieldtrip/src/mtimes2x2.m M /trunk/external/fieldtrip/src/sandwich2x2.m M /trunk/external/fieldtrip/statfun/private/ft_warning.m M /trunk/external/fieldtrip/statfun/private/getsubfield.m M /trunk/external/fieldtrip/statfun/private/issubfield.m M /trunk/external/fieldtrip/statfun/private/rmsubfield.m M /trunk/external/fieldtrip/statfun/private/setsubfield.m M /trunk/external/fieldtrip/utilities/ft_cfg2keyval.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_fetch_event.m M /trunk/external/fieldtrip/utilities/ft_getopt.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_selectdata_old.m M /trunk/external/fieldtrip/utilities/ft_setopt.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/ft_source2grid.m M /trunk/external/fieldtrip/utilities/ft_source2sparse.m M /trunk/external/fieldtrip/utilities/ft_struct2double.m M /trunk/external/fieldtrip/utilities/ft_struct2single.m M /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/ft_warp_error.m M /trunk/external/fieldtrip/utilities/ft_warp_optim.m M /trunk/external/fieldtrip/utilities/getsubfield.m M /trunk/external/fieldtrip/utilities/issubfield.m M /trunk/external/fieldtrip/utilities/keepfields.m M /trunk/external/fieldtrip/utilities/keyval2cfg.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/randomseed.m M /trunk/external/fieldtrip/utilities/private/undobalancing.m M /trunk/external/fieldtrip/utilities/removefields.m M /trunk/external/fieldtrip/utilities/renamefields.m M /trunk/external/fieldtrip/utilities/rmsubfield.m M /trunk/external/fieldtrip/utilities/setsubfield.m update of external/fieldtrip to r11127 ------------------------------------------------------------------------ r6697 | spm | 2016-01-27 14:57:28 +0000 (Wed, 27 Jan 2016) | 2 lines Changed paths: M /trunk/toolbox/mci/gradients/spm_mci_adjoint.m M /trunk/toolbox/mci/gradients/spm_mci_adjoint_sun.m M /trunk/toolbox/mci/gradients/spm_mci_fwd.m M /trunk/toolbox/mci/gradients/spm_mci_grad_curve.m M /trunk/toolbox/mci/gradients/spm_mci_joint_grad.m M /trunk/toolbox/mci/gradients/spm_mci_sens.m M /trunk/toolbox/mci/gradients/spm_mci_sens_init.m M /trunk/toolbox/mci/gradients/spm_mci_sens_sun.m M /trunk/toolbox/mci/inference/spm_mci_ais.m M /trunk/toolbox/mci/inference/spm_mci_diag.m M /trunk/toolbox/mci/inference/spm_mci_ess.m M /trunk/toolbox/mci/inference/spm_mci_fixed.m M /trunk/toolbox/mci/inference/spm_mci_lgv.m M /trunk/toolbox/mci/inference/spm_mci_lgv_vl.m M /trunk/toolbox/mci/inference/spm_mci_like_ind.m M /trunk/toolbox/mci/inference/spm_mci_mfx.m M /trunk/toolbox/mci/inference/spm_mci_mfx_dynamic.m M /trunk/toolbox/mci/inference/spm_mci_mh.m M /trunk/toolbox/mci/inference/spm_mci_mvnpost.m M /trunk/toolbox/mci/inference/spm_mci_obsnoise.m M /trunk/toolbox/mci/inference/spm_mci_pop.m M /trunk/toolbox/mci/inference/spm_mci_post.m M /trunk/toolbox/mci/inference/spm_mci_postslices.m M /trunk/toolbox/mci/inference/spm_mci_quantiles.m M /trunk/toolbox/mci/inference/spm_mci_random.m M /trunk/toolbox/mci/inference/spm_mci_stat.m M /trunk/toolbox/mci/inference/spm_mci_vw_init.m M /trunk/toolbox/mci/models/discount/mci_discount_struct.m M /trunk/toolbox/mci/models/lds/mci_lds_plot_fit.m M /trunk/toolbox/mci/models/lds/mci_lds_struct.m M /trunk/toolbox/mci/models/linear/mci_linear_struct.m M /trunk/toolbox/mci/models/logistic/mci_logistic_struct.m M /trunk/toolbox/mci/models/nmm/mci_nmm_struct.m M /trunk/toolbox/mci/plotting/mci_plot_dist.m M /trunk/toolbox/mci/plotting/mci_plot_dist_multi.m Bug fix: try/catch syntax for compatibility with MATLAB Compiler. ------------------------------------------------------------------------ r6698 | peter | 2016-01-27 15:56:50 +0000 (Wed, 27 Jan 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_dcm_peb.m Added model comparison to DCM PEB batch, fixed manual field definition, enabled selecting DCMs for fMRI by model rather than subject. ------------------------------------------------------------------------ r6699 | vladimir | 2016-01-28 09:55:26 +0000 (Thu, 28 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_ft_multitaper_coherence.m bug fix ------------------------------------------------------------------------ r6700 | peter | 2016-01-28 10:13:16 +0000 (Thu, 28 Jan 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_peb_review.m Added batch for second level Bayesian Model Reduction of DCM PEB models ------------------------------------------------------------------------ r6701 | peter | 2016-01-28 15:00:28 +0000 (Thu, 28 Jan 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_review.m Added support for PEB models of MEG/EEG data to spm_dcm_peb_review.m ------------------------------------------------------------------------ r6702 | guillaume | 2016-01-28 15:10:49 +0000 (Thu, 28 Jan 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/config/spm_rewrite_job.m M /trunk/spm_dcm_load.m M /trunk/spm_dcm_peb_review.m Backward compatibility with older DCM for fMRI estimation batches. ------------------------------------------------------------------------ r6703 | guillaume | 2016-01-28 17:36:10 +0000 (Thu, 28 Jan 2016) | 2 lines Changed paths: M /trunk/man/biblio/methods_group.bib M /trunk/spm_parrec2nifti.m Enhancement: robustify PAR/REC import. ------------------------------------------------------------------------ r6704 | guillaume | 2016-01-29 17:23:13 +0000 (Fri, 29 Jan 2016) | 1 line Changed paths: M /trunk/@gifti/private/Makefile M /trunk/@gifti/private/zstream.mexw64 Bug fix: as mentioned in r6552 log, add double quotes for CFLAGS on Windows platforms. ------------------------------------------------------------------------ r6705 | karl | 2016-01-31 13:06:48 +0000 (Sun, 31 Jan 2016) | 1 line Changed paths: M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_mdp.m M /trunk/spm_dcm_peb.m M /trunk/spm_diff.m ------------------------------------------------------------------------ r6706 | karl | 2016-01-31 13:10:08 +0000 (Sun, 31 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_fit.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor upgrades to NDP schemes ------------------------------------------------------------------------ r6707 | karl | 2016-01-31 13:16:28 +0000 (Sun, 31 Jan 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m minor developments of MDP schemes ------------------------------------------------------------------------ r6708 | peter | 2016-02-01 19:50:33 +0000 (Mon, 01 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_review.m Simplification of PEB DCM batch / workflow. Fixes for CMC model in spm_dcm_peb_review and fix to lower bound precision component in spm_dcm_peb. Input validation for spm_dcm_peb_bmc. ------------------------------------------------------------------------ r6709 | peter | 2016-02-01 20:00:19 +0000 (Mon, 01 Feb 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Minor correction ------------------------------------------------------------------------ r6710 | peter | 2016-02-02 18:08:53 +0000 (Tue, 02 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m Added separate batch functions for comparing specified reduced PEB models and free search over reduced PEB models ------------------------------------------------------------------------ r6711 | peter | 2016-02-03 15:25:43 +0000 (Wed, 03 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg.m A /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_dcm_peb.m M /trunk/config/spm_rewrite_job.m Re-arranged DCM batch to have shared estimate function for EEG/MEG and fMRI ------------------------------------------------------------------------ r6712 | peter | 2016-02-04 15:12:25 +0000 (Thu, 04 Feb 2016) | 1 line Changed paths: M /trunk/spm_data_id.m A /trunk/tests/test_spm_cfg_dcm_est.m Added unit tests for new DCM estimation batch, and fixed bug in spm_data_id where unrecognised types (e.g. logical) caused a crash. ------------------------------------------------------------------------ r6713 | peter | 2016-02-04 15:39:47 +0000 (Thu, 04 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/tests/test_spm_cfg_dcm_est.m Fixed subversion properties on 2 recent commits ------------------------------------------------------------------------ r6714 | peter | 2016-02-04 17:46:46 +0000 (Thu, 04 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_rewrite_job.m M /trunk/spm_dcm_load.m Made fMRI/MEG/EEG DCM batches backwards-compatible and fixed a bug in spm_dcm_load.m ------------------------------------------------------------------------ r6715 | spm | 2016-02-06 22:24:50 +0000 (Sat, 06 Feb 2016) | 1 line Changed paths: A /trunk/external/fieldtrip/external/images A /trunk/external/fieldtrip/external/images/README A /trunk/external/fieldtrip/external/images/rgb2hsv.m Enhancement: add fieldtrip/external/images ------------------------------------------------------------------------ r6716 | peter | 2016-02-08 18:21:37 +0000 (Mon, 08 Feb 2016) | 1 line Changed paths: M /trunk/spm_dcm_fit.m M /trunk/spm_dcm_generate.m A /trunk/spm_dcm_identify.m M /trunk/spm_dcm_load.m A /trunk/tests/test_spm_dcm_identify.m A /trunk/tests/test_spm_dcm_simulate.m Introduced spm_dcm_identify for identifying a DCM's modality and spm_dcm_simulate for simulating DCM data, with unit tests for each. ------------------------------------------------------------------------ r6717 | peter | 2016-02-08 21:00:34 +0000 (Mon, 08 Feb 2016) | 1 line Changed paths: A /trunk/spm_dcm_simulate.m Added spm_dcm_simulate.m ------------------------------------------------------------------------ r6718 | peter | 2016-02-09 10:06:41 +0000 (Tue, 09 Feb 2016) | 1 line Changed paths: M /trunk/tests/test_spm_dcm_simulate.m Minor fix ------------------------------------------------------------------------ r6719 | karl | 2016-02-11 20:18:29 +0000 (Thu, 11 Feb 2016) | 1 line Changed paths: M /trunk/spm_diff.m M /trunk/spm_dot.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m revisions to DEM reading demo (and automatic concatenation in spm_diff.m ------------------------------------------------------------------------ r6720 | karl | 2016-02-15 21:06:55 +0000 (Mon, 15 Feb 2016) | 1 line Changed paths: M /trunk/spm_dcm_delay.m M /trunk/spm_int_L.m M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_erp_L.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc.m M /trunk/toolbox/dcm_meeg/spm_fx_erp.m A /trunk/toolbox/dcm_meeg/spm_fx_gen.m M /trunk/toolbox/dcm_meeg/spm_gen_Q.m M /trunk/toolbox/dcm_meeg/spm_lx_erp.m Addition of generic DCM for EEG (with multiple source types) ------------------------------------------------------------------------ r6721 | karl | 2016-02-16 20:26:40 +0000 (Tue, 16 Feb 2016) | 1 line Changed paths: M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m M /trunk/toolbox/dcm_meeg/spm_gen_Q.m Further improvements to generic CDCM for EEG ------------------------------------------------------------------------ r6722 | vladimir | 2016-02-17 15:04:11 +0000 (Wed, 17 Feb 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_meeg.m D /trunk/toolbox/dcm_meeg/spm_dcm_estimate_group.m Added specification of M/EEG models ------------------------------------------------------------------------ r6723 | peter | 2016-02-19 15:04:18 +0000 (Fri, 19 Feb 2016) | 1 line Changed paths: M /trunk/spm_dcm_bpa.m Simplification of BPA and fix for multi-session data (with new GCM framework). Thanks to KJF. ------------------------------------------------------------------------ r6724 | karl | 2016-02-19 19:13:07 +0000 (Fri, 19 Feb 2016) | 1 line Changed paths: M /trunk/spm_dcm_average.m M /trunk/spm_dcm_post_hoc.m M /trunk/spm_dcm_post_hoc_old.m Bug removed from post hoc (BMR) routines ------------------------------------------------------------------------ r6725 | karl | 2016-02-19 19:14:25 +0000 (Fri, 19 Feb 2016) | 1 line Changed paths: M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m M /trunk/toolbox/dcm_meeg/spm_gen_Q.m Further generalisation of DCM for EEG (allowing source specific models) ------------------------------------------------------------------------ r6726 | karl | 2016-02-19 19:14:58 +0000 (Fri, 19 Feb 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_demo_MDP_rule.m Addition of rule leaning demo (provisional) ------------------------------------------------------------------------ r6727 | karl | 2016-02-20 18:06:47 +0000 (Sat, 20 Feb 2016) | 1 line Changed paths: M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m upgrade to generic DCM routines for EEG ------------------------------------------------------------------------ r6728 | karl | 2016-02-20 18:07:58 +0000 (Sat, 20 Feb 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_check.m minor upgrade to MDP schemes ------------------------------------------------------------------------ r6729 | karl | 2016-02-21 15:40:48 +0000 (Sun, 21 Feb 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Simplification of factored MDP scheme ------------------------------------------------------------------------ r6730 | spm | 2016-02-24 13:49:35 +0000 (Wed, 24 Feb 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/README M /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/mne2grad.m A /trunk/external/fieldtrip/fileio/private/read_smi_txt.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_dipoli.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_electrodeplacement.m A /trunk/external/fieldtrip/ft_intracranplotER.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/ft_plot_montage.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m A /trunk/external/fieldtrip/plotting/private/ptriprojn.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/external/fieldtrip/preproc/ft_preproc_smooth.m M /trunk/external/fieldtrip/private/dimindex.m M /trunk/external/fieldtrip/private/freq2timelock.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/private/getdimord.m update of external/fieldtrip to r11163 ------------------------------------------------------------------------ r6731 | spm | 2016-02-24 14:13:28 +0000 (Wed, 24 Feb 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/README M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_corr.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_dtf.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_pdc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_powcorr_ortho.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_ppc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_psi.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_wpli.m M /trunk/external/fieldtrip/connectivity/private/blockwise_conditionalgranger.m M /trunk/external/fieldtrip/connectivity/private/det2x2.m M /trunk/external/fieldtrip/connectivity/private/fixname.m M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/connectivity/private/getsubfield.m M /trunk/external/fieldtrip/connectivity/private/inv2x2.m M /trunk/external/fieldtrip/connectivity/private/issubfield.m M /trunk/external/fieldtrip/connectivity/private/keyval.m M /trunk/external/fieldtrip/connectivity/private/mtimes2x2.m M /trunk/external/fieldtrip/connectivity/private/rmsubfield.m M /trunk/external/fieldtrip/connectivity/private/sandwich2x2.m M /trunk/external/fieldtrip/connectivity/private/setsubfield.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m M /trunk/external/fieldtrip/connectivity/private/standardise.m M /trunk/external/fieldtrip/edf2fieldtrip.m M /trunk/external/fieldtrip/fieldtrip2ctf.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fieldtrip2spss.m D /trunk/external/fieldtrip/fileio/@uint64/abs.c D /trunk/external/fieldtrip/fileio/@uint64/abs.m D /trunk/external/fieldtrip/fileio/@uint64/all.m D /trunk/external/fieldtrip/fileio/@uint64/any.m D /trunk/external/fieldtrip/fileio/@uint64/compile_uint64.m D /trunk/external/fieldtrip/fileio/@uint64/diff.m D /trunk/external/fieldtrip/fileio/@uint64/max.c D /trunk/external/fieldtrip/fileio/@uint64/max.m D /trunk/external/fieldtrip/fileio/@uint64/min.c D /trunk/external/fieldtrip/fileio/@uint64/min.m D /trunk/external/fieldtrip/fileio/@uint64/minus.c D /trunk/external/fieldtrip/fileio/@uint64/minus.m D /trunk/external/fieldtrip/fileio/@uint64/plus.c D /trunk/external/fieldtrip/fileio/@uint64/plus.m D /trunk/external/fieldtrip/fileio/@uint64/rdivide.c D /trunk/external/fieldtrip/fileio/@uint64/rdivide.m D /trunk/external/fieldtrip/fileio/@uint64/test.m D /trunk/external/fieldtrip/fileio/@uint64/times.c D /trunk/external/fieldtrip/fileio/@uint64/times.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_create_buffer.m M /trunk/external/fieldtrip/fileio/ft_destroy_buffer.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_filter_event.m M /trunk/external/fieldtrip/fileio/ft_flush_data.m M /trunk/external/fieldtrip/fileio/ft_flush_event.m M /trunk/external/fieldtrip/fileio/ft_flush_header.m M /trunk/external/fieldtrip/fileio/ft_poll_buffer.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_event.m M /trunk/external/fieldtrip/fileio/ft_write_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m M /trunk/external/fieldtrip/fileio/ft_write_spike.m M /trunk/external/fieldtrip/fileio/private/ama2vol.m M /trunk/external/fieldtrip/fileio/private/appendevent.m M /trunk/external/fieldtrip/fileio/private/avw_hdr_read.m M /trunk/external/fieldtrip/fileio/private/avw_img_read.m M /trunk/external/fieldtrip/fileio/private/bigendian.m M /trunk/external/fieldtrip/fileio/private/bounding_mesh.m M /trunk/external/fieldtrip/fileio/private/bti2grad.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/cstructdecode.m M /trunk/external/fieldtrip/fileio/private/ctf2grad.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/decode_fif.m M /trunk/external/fieldtrip/fileio/private/dimlength.m M /trunk/external/fieldtrip/fileio/private/elproj.m M /trunk/external/fieldtrip/fileio/private/fetch_url.m M /trunk/external/fieldtrip/fileio/private/fif2grad.m M /trunk/external/fieldtrip/fileio/private/filetype_check_extension.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/filetype_check_uri.m M /trunk/external/fieldtrip/fileio/private/find_outermost_boundary.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/fixinside.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_comp.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_dip.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_mvar.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_spike.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_vol.m M /trunk/external/fieldtrip/fileio/private/ft_estimate_units.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_findcfg.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_headcoordinates.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/ft_scalingfactor.m M /trunk/external/fieldtrip/fileio/private/ft_senslabel.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/ft_voltype.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/ft_warp_apply.m M /trunk/external/fieldtrip/fileio/private/getsubfield.m M /trunk/external/fieldtrip/fileio/private/hasyokogawa.m M /trunk/external/fieldtrip/fileio/private/inflate_file.m M /trunk/external/fieldtrip/fileio/private/issubfield.m M /trunk/external/fieldtrip/fileio/private/istrue.m M /trunk/external/fieldtrip/fileio/private/itab2grad.m M /trunk/external/fieldtrip/fileio/private/jaga16_packet.m M /trunk/external/fieldtrip/fileio/private/keyval.m M /trunk/external/fieldtrip/fileio/private/labelcmb2indx.m M /trunk/external/fieldtrip/fileio/private/littleendian.m M 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/trunk/external/fieldtrip/utilities/ft_source2grid.m M /trunk/external/fieldtrip/utilities/ft_source2sparse.m M /trunk/external/fieldtrip/utilities/ft_struct2double.m M /trunk/external/fieldtrip/utilities/ft_struct2single.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/ft_warp_apply.m M /trunk/external/fieldtrip/utilities/ft_warp_error.m M /trunk/external/fieldtrip/utilities/ft_warp_optim.m M /trunk/external/fieldtrip/utilities/getsubfield.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m M /trunk/external/fieldtrip/utilities/issubfield.m M /trunk/external/fieldtrip/utilities/istrue.m M /trunk/external/fieldtrip/utilities/keepfields.m M /trunk/external/fieldtrip/utilities/keyval.m D /trunk/external/fieldtrip/utilities/keyval2cfg.m M /trunk/external/fieldtrip/utilities/keyvalcheck.m M /trunk/external/fieldtrip/utilities/match_str.m M /trunk/external/fieldtrip/utilities/memtic.m M /trunk/external/fieldtrip/utilities/memtoc.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/avgoverdim.m M /trunk/external/fieldtrip/utilities/private/channelposition.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/dimlength.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m M /trunk/external/fieldtrip/utilities/private/fixdipole.m M /trunk/external/fieldtrip/utilities/private/fixinside.m M /trunk/external/fieldtrip/utilities/private/fixname.m M /trunk/external/fieldtrip/utilities/private/ft_findcfg.m M /trunk/external/fieldtrip/utilities/private/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_previous.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_randomseed.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_savevar.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_trackconfig.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_debug.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_loadvar.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_randomseed.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_trackconfig.m M /trunk/external/fieldtrip/utilities/private/getaddress.m M /trunk/external/fieldtrip/utilities/private/gethostname.m M /trunk/external/fieldtrip/utilities/private/getusername.m M /trunk/external/fieldtrip/utilities/private/globalrescale.m M /trunk/external/fieldtrip/utilities/private/icosahedron.m M /trunk/external/fieldtrip/utilities/private/icosahedron42.m M /trunk/external/fieldtrip/utilities/private/individual2sn.m M /trunk/external/fieldtrip/utilities/private/labelcmb2indx.m M /trunk/external/fieldtrip/utilities/private/lmoutr.m M /trunk/external/fieldtrip/utilities/private/lmoutrn.m M /trunk/external/fieldtrip/utilities/private/loadvar.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m M /trunk/external/fieldtrip/utilities/private/mxSerialize.m M /trunk/external/fieldtrip/utilities/private/offset2time.m M /trunk/external/fieldtrip/utilities/private/parameterselection.m M /trunk/external/fieldtrip/utilities/private/pinvNx2.m M /trunk/external/fieldtrip/utilities/private/project_elec.m M /trunk/external/fieldtrip/utilities/private/ptriproj.m M /trunk/external/fieldtrip/utilities/private/randomseed.m M /trunk/external/fieldtrip/utilities/private/refine.m M /trunk/external/fieldtrip/utilities/private/rigidbody.m M /trunk/external/fieldtrip/utilities/private/rotate.m M /trunk/external/fieldtrip/utilities/private/savevar.m M /trunk/external/fieldtrip/utilities/private/scale.m M /trunk/external/fieldtrip/utilities/private/smartinput.m M /trunk/external/fieldtrip/utilities/private/sn2individual.m M /trunk/external/fieldtrip/utilities/private/time2offset.m M /trunk/external/fieldtrip/utilities/private/traditional.m M /trunk/external/fieldtrip/utilities/private/translate.m M /trunk/external/fieldtrip/utilities/private/volumepermute.m M /trunk/external/fieldtrip/utilities/removefields.m M /trunk/external/fieldtrip/utilities/renamefields.m M /trunk/external/fieldtrip/utilities/rmsubfield.m M /trunk/external/fieldtrip/utilities/setsubfield.m M /trunk/external/fieldtrip/utilities/tokenize.m update of external/fieldtrip to 4d6365a ------------------------------------------------------------------------ r6732 | guillaume | 2016-02-24 14:23:08 +0000 (Wed, 24 Feb 2016) | 2 lines Changed paths: M /trunk/external/Makefile.fieldtrip D /trunk/external/fieldtrip/fileio/@uint64 Refactoring: remove compilation of fieldtrip/fileio/@uint64 ------------------------------------------------------------------------ r6733 | vladimir | 2016-02-24 15:47:23 +0000 (Wed, 24 Feb 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_headshape.m Fix to also read fiducials from sfp files ------------------------------------------------------------------------ r6734 | peter | 2016-03-02 12:02:46 +0000 (Wed, 02 Mar 2016) | 1 line Changed paths: M /trunk/spm_DEM_eval_diff.m M /trunk/spm_diff.m Bux fix to spm_diff.m ------------------------------------------------------------------------ r6735 | peter | 2016-03-02 15:40:47 +0000 (Wed, 02 Mar 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_identify.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_specify_ui.m M /trunk/tests/test_spm_cfg_dcm_est.m A /trunk/tests/test_spm_cfg_dcm_peb.m Bug fixes & improvements for compatibility between DCM for CSD (fMRI) and PEB. 1. Simplified PEB batch structure names. 2. Updated unit tests for PEB batches. 3. Fixed issue where CSD DCMs had mis-specified B and C matrices, preventing compatibility with PEB. 4. Fixed identification criterion for CSD in spm_dcm_identify.m. 5. Reverted previous change in spm_dcm_peb related to rP. 6. Introduced CSD option to specification stage. ------------------------------------------------------------------------ r6736 | peter | 2016-03-03 11:51:18 +0000 (Thu, 03 Mar 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Fixed colours and colorbars in spm_dcm_peb_review.m ------------------------------------------------------------------------ r6737 | karl | 2016-03-03 12:05:51 +0000 (Thu, 03 Mar 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_rnd.m M /trunk/spm_dcm_ppd.m D /trunk/tests/DEMO_BAYES_FACTORS.m D /trunk/tests/DEMO_BMR_PEB.m D /trunk/tests/DEMO_DCM_PEB.m D /trunk/tests/DEMO_DCM_PEB_FIT.m D /trunk/tests/DEMO_DCM_PEB_REC.m D /trunk/tests/DEMO_GROUP_PEB.m D /trunk/tests/DEMO_Lindley_paradox.m A /trunk/tests/ROBOT_DEM.m A /trunk/toolbox/DEM/DEMO_BAYES_FACTORS.m A /trunk/toolbox/DEM/DEMO_BMR_PEB.m A /trunk/toolbox/DEM/DEMO_DCM_PEB.m A /trunk/toolbox/DEM/DEMO_DCM_PEB_FIT.m A /trunk/toolbox/DEM/DEMO_DCM_PEB_REC.m A /trunk/toolbox/DEM/DEMO_GROUP_PEB.m A /trunk/toolbox/DEM/DEMO_Lindley_paradox.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m D /trunk/toolbox/DEM/ROBOT_DEM.m Debugging of parametric empirical Bayes routines (and translocation to the DEM Toolbox) ------------------------------------------------------------------------ r6738 | karl | 2016-03-03 12:07:41 +0000 (Thu, 03 Mar 2016) | 1 line Changed paths: M /trunk/spm_bireduce.m M /trunk/spm_diff.m M /trunk/spm_int_L.m Simplification of spm_diff routine (to remove transposition of derivatives of scalars with respect to objectives) ------------------------------------------------------------------------ r6739 | peter | 2016-03-04 13:48:34 +0000 (Fri, 04 Mar 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_peb_review.m M /trunk/tests/test_spm_cfg_dcm_peb.m Added batch for DCM PEB leave-one-out cross-validation and posterior probabilities to spm_dcm_peb_review.m ------------------------------------------------------------------------ r6740 | karl | 2016-03-06 12:47:09 +0000 (Sun, 06 Mar 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m updates to rule learning demo (DEM – MDP) ------------------------------------------------------------------------ r6741 | karl | 2016-03-07 10:32:29 +0000 (Mon, 07 Mar 2016) | 1 line Changed paths: A /trunk/spm_betaln.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Log of beta function added ------------------------------------------------------------------------ r6742 | karl | 2016-03-10 12:02:31 +0000 (Thu, 10 Mar 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/DEMO_DCM_PEB.m Update to PEB schemes including alpha and beta D4 parameterization ------------------------------------------------------------------------ r6743 | vladimir | 2016-03-10 15:07:48 +0000 (Thu, 10 Mar 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m Added alpha to the batch ------------------------------------------------------------------------ r6744 | spm | 2016-03-10 17:44:24 +0000 (Thu, 10 Mar 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_psi.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m A /trunk/external/fieldtrip/external/fileexchange A /trunk/external/fieldtrip/external/fileexchange/uimage.m A /trunk/external/fieldtrip/external/fileexchange/uimagesc.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shape.m M /trunk/external/fieldtrip/fileio/private/read_micromed_trc.m A /trunk/external/fieldtrip/fileio/private/refine.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_sourcedepth.m M /trunk/external/fieldtrip/forward/private/ft_warning.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_audiovideobrowser.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_prepare_bemmodel.m M /trunk/external/fieldtrip/ft_prepare_concentricspheres.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_localspheres.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_qualitycheck.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_sensorrealign.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_stratify.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/harmony.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/private/ft_warning.m M /trunk/external/fieldtrip/plotting/private/refine.m M /trunk/external/fieldtrip/preproc/private/ft_warning.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/refine.m M /trunk/external/fieldtrip/specest/private/ft_warning.m M /trunk/external/fieldtrip/statfun/private/ft_warning.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/private/refine.m update of external/fieldtrip to 305ee34 ------------------------------------------------------------------------ r6745 | guillaume | 2016-03-10 18:21:32 +0000 (Thu, 10 Mar 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_dcm_peb.m Bug fix: typo for alpha parameter. ------------------------------------------------------------------------ r6746 | guillaume | 2016-03-11 20:15:00 +0000 (Fri, 11 Mar 2016) | 2 lines Changed paths: M /trunk/spm_orthviews/spm_ov_browser.m Enhancement: pre-select current image file in the image browser. A request from Oliver J. ------------------------------------------------------------------------ r6747 | karl | 2016-03-12 11:33:11 +0000 (Sat, 12 Mar 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m A /trunk/toolbox/DEM/spm_MDP_VB_sleep.m development of demo structure learning routines ------------------------------------------------------------------------ r6748 | karl | 2016-03-14 10:04:41 +0000 (Mon, 14 Mar 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m M /trunk/toolbox/DEM/spm_MDP_check.m A /trunk/toolbox/DEM/spm_MDP_log_evidence.m Further development of structure learning demos for NDP ------------------------------------------------------------------------ r6749 | peter | 2016-03-14 17:38:12 +0000 (Mon, 14 Mar 2016) | 1 line Changed paths: M /trunk/config/spm_rewrite_job.m Backward compatibility fix for DCM for fMRI estimation ------------------------------------------------------------------------ r6750 | guillaume | 2016-03-21 12:36:08 +0000 (Mon, 21 Mar 2016) | 4 lines Changed paths: M /trunk/spm.m M /trunk/spm_orthviews/spm_ov_browser.m Enhancements: * Always have DEM toolbox in MATLAB path. * Minor update to OrthViews' Browse facility. ------------------------------------------------------------------------ r6751 | guillaume | 2016-03-23 15:39:32 +0000 (Wed, 23 Mar 2016) | 2 lines Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB.m Bug fix: couple of fixes from Philipp S. ------------------------------------------------------------------------ r6752 | guillaume | 2016-03-24 16:17:25 +0000 (Thu, 24 Mar 2016) | 2 lines Changed paths: M /trunk/spm_contrasts.m M /trunk/spm_data_hdr_write.m M /trunk/spm_mesh_calc.m M /trunk/spm_spm.m Enhancement: explicitly search for SurfaceID metadata in GIfTI files. ------------------------------------------------------------------------ r6753 | guillaume | 2016-03-24 20:30:28 +0000 (Thu, 24 Mar 2016) | 2 lines Changed paths: M /trunk/spm_defaults.m Enhancement: increasing defaults.stats.maxmem to 2^28. ------------------------------------------------------------------------ r6754 | will | 2016-03-25 06:44:58 +0000 (Fri, 25 Mar 2016) | 1 line Changed paths: A /trunk/man/dcm_fnirs A /trunk/man/dcm_fnirs/dcm_fnirs.tex A /trunk/man/dcm_fnirs/figs A /trunk/man/dcm_fnirs/figs/dcm_fit.pdf A /trunk/man/dcm_fnirs/figs/est_conn.pdf A /trunk/man/dcm_fnirs/figs/est_neural.pdf A /trunk/man/dcm_fnirs/figs/gui_con.pdf A /trunk/toolbox/dcm_fnirs/mmclab A /trunk/toolbox/dcm_fnirs/mmclab/estimate_greens_mmclab.m A /trunk/toolbox/dcm_fnirs/mmclab/run.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_params.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_priors.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_specify.m A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_viewer_result.fig A /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_viewer_result.m D /trunk/toolbox/dcm_fnirs/spm_fnirs_convert.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_sensitivity.m A /trunk/toolbox/dcm_fnirs/spm_fnirs_viewer_sensor.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_wavg.m M /trunk/toolbox/dcm_fnirs/spm_fx_fnirs.m M /trunk/toolbox/dcm_fnirs/spm_gx_fnirs.m M /trunk/toolbox/dcm_fnirs/spm_gx_state_fnirs.m Update of DCM for fNIRS including chapter for SPM manual ------------------------------------------------------------------------ r6755 | karl | 2016-03-25 09:48:34 +0000 (Fri, 25 Mar 2016) | 1 line Changed paths: M /trunk/spm_bilinear_condition.m M /trunk/spm_dcm_estimate.m M /trunk/spm_dcm_review.m D /trunk/spm_kernel.m M /trunk/spm_kernels.m bug fix in spm_kernels (spm_bilinear_condition.m) – setting upper bound on unstable eigenmodes to 32 seconds ------------------------------------------------------------------------ r6756 | karl | 2016-03-25 09:49:08 +0000 (Fri, 25 Mar 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m M /trunk/toolbox/DEM/spm_MDP_log_evidence.m development work on structure learning in MDP schemes ------------------------------------------------------------------------ r6757 | karl | 2016-03-25 17:34:33 +0000 (Fri, 25 Mar 2016) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb_bmc.m M /trunk/toolbox/DEM/DEMO_DCM_PEB.m gamma parameter added to relax point null hypotheses in Bayesian model comparison (restricted to exhaustive searches) ------------------------------------------------------------------------ r6758 | vladimir | 2016-03-26 07:53:09 +0000 (Sat, 26 Mar 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m added gamma parameter to batch ------------------------------------------------------------------------ r6759 | karl | 2016-03-27 20:45:17 +0100 (Sun, 27 Mar 2016) | 1 line Changed paths: A /trunk/spm_csd_fmri_gu.m M /trunk/spm_csd_fmri_mtf.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_csd_data.m M /trunk/spm_dcm_fmri_priors.m M /trunk/spm_rand_power_law.m M /trunk/toolbox/DEM/DEMO_DCM_PEB.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m A /trunk/toolbox/DEM/DEM_demo_fMRI_PEB.m M /trunk/toolbox/DEM/DEM_demo_induced_fMRI.m M /trunk/toolbox/Neural_Models/spm_erp2csd_demo.m Addition a multi-sessional spectral DCM demo using PEB routines. This entailed a slight simplification of the priors for spectral DCM (with a fixed form of neuronal fluctuations over regions). ------------------------------------------------------------------------ r6760 | guillaume | 2016-03-29 16:57:32 +0100 (Tue, 29 Mar 2016) | 2 lines Changed paths: M /trunk/man/dcm_fnirs/dcm_fnirs.tex M /trunk/man/manual.pdf M /trunk/man/manual.tex M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_specify.m M /trunk/toolbox/dcm_fnirs/spm_fnirs_sensitivity.m Doc: new compilation of the PDF manual with the DCM for fNIRS chapter. ------------------------------------------------------------------------ r6761 | guillaume | 2016-03-30 16:11:20 +0100 (Wed, 30 Mar 2016) | 2 lines Changed paths: A /trunk/man/Makefile M /trunk/src/Makefile Enhancement: compilation of PDF files through Makefile. ------------------------------------------------------------------------ r6762 | guillaume | 2016-04-01 17:57:15 +0100 (Fri, 01 Apr 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_dcm_peb.m Bug fix: a follow-up from r6758. ------------------------------------------------------------------------ r6763 | karl | 2016-04-04 10:24:18 +0100 (Mon, 04 Apr 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m Sleep (Bayesian model reduction) routines added to MDP schemes (rule learning demo) ------------------------------------------------------------------------ r6764 | guillaume | 2016-04-05 19:05:20 +0100 (Tue, 05 Apr 2016) | 2 lines Changed paths: M /trunk/config/spm_run_con.m Bug fix: have dependencies to contain full paths to contrasts and SPM{.}s. Thanks to Martin D. ------------------------------------------------------------------------ r6765 | karl | 2016-04-09 13:39:02 +0100 (Sat, 09 Apr 2016) | 1 line Changed paths: M /trunk/spm_diff.m bug fix to spm_diff (to handle empty cells) ------------------------------------------------------------------------ r6766 | peter | 2016-04-12 17:09:24 +0100 (Tue, 12 Apr 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m Fixed dependency issue with PEB ------------------------------------------------------------------------ r6767 | guillaume | 2016-04-13 16:23:35 +0100 (Wed, 13 Apr 2016) | 2 lines Changed paths: M /trunk/man/biblio/external.bib M /trunk/man/biblio/methods_group.bib M /trunk/man/dcm_fnirs/dcm_fnirs.tex M /trunk/man/manual.pdf Doc: new version of the PDF manual. ------------------------------------------------------------------------ r6768 | volkmar | 2016-04-15 12:37:19 +0100 (Fri, 15 Apr 2016) | 1 line Changed paths: M /trunk/spm_dicom_header.m Mlint performance tuning. ------------------------------------------------------------------------ r6769 | volkmar | 2016-04-15 12:37:20 +0100 (Fri, 15 Apr 2016) | 1 line Changed paths: M /trunk/spm_dicom_header.m Try harder to read unknown sequence tags instead of reading the remainder of a file into a large blob of data. ------------------------------------------------------------------------ r6770 | peter | 2016-04-18 10:57:44 +0100 (Mon, 18 Apr 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/tests/test_spm_cfg_dcm_peb.m A /trunk/tests/test_spm_dcm_loo.m Batch updates for PEB - updated documentation, moved alpha to separate branch. Updated unit tests to include alpha, LOO batch and spm_dcm_loo.m. ------------------------------------------------------------------------ r6771 | peter | 2016-04-18 15:10:58 +0100 (Mon, 18 Apr 2016) | 1 line Changed paths: M /trunk/spm_dcm_loo.m M /trunk/tests/test_spm_dcm_loo.m ------------------------------------------------------------------------ r6772 | john | 2016-04-19 11:21:41 +0100 (Tue, 19 Apr 2016) | 9 lines Changed paths: M /trunk/config/spm_cfg_norm.m M /trunk/config/spm_cfg_preproc8.m M /trunk/spm_dicom_convert.m M /trunk/src/shoot_optimN.c M /trunk/src/spm_field.c M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m * spm_cfg_preproc8.m, spm_cfg_norm.m & tbx_cfg_longitudinal.m: Added comments about possible future changes to settings that may improve preformance. * spm_dicom_convert.m: A fix for a problem reported by Mihoko Takahashi that relates to the way GE data are handled. * shoot_optimN.c: A minor change to better handle rounding error. Probably has no practical consequences. * spm_field.c: Corrected the way that inputs were handled. No effect on SPM as run by the UI, but bugs nevertheless. ------------------------------------------------------------------------ r6773 | john | 2016-04-20 10:26:59 +0100 (Wed, 20 Apr 2016) | 3 lines Changed paths: M /trunk/spm_dicom_convert.m * Another fix for Mihoko Takahashi's data. One day, I'll get around to removing the try/catches from this code. This would make it much easier to debug. ------------------------------------------------------------------------ r6774 | guillaume | 2016-04-20 13:25:08 +0100 (Wed, 20 Apr 2016) | 2 lines Changed paths: M /trunk/spm_orthviews/spm_ov_contour.m Enhancement: command line access to contour plugin for orthviews. ------------------------------------------------------------------------ r6775 | guillaume | 2016-04-20 16:06:23 +0100 (Wed, 20 Apr 2016) | 2 lines Changed paths: A /trunk/toolbox/dcm_fnirs/mmclab/example_estimate_greens_mmclab.m (from /trunk/toolbox/dcm_fnirs/mmclab/run.m:6774) D /trunk/toolbox/dcm_fnirs/mmclab/run.m Bug fix: rename run.m ------------------------------------------------------------------------ r6776 | gareth | 2016-04-20 16:28:39 +0100 (Wed, 20 Apr 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m updated to allow cross-validation ------------------------------------------------------------------------ r6777 | spm | 2016-04-20 17:33:32 +0100 (Wed, 20 Apr 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/ft_warp_apply.m M /trunk/external/fieldtrip/fileio/private/getdimord.m A /trunk/external/fieldtrip/fileio/private/quaternion.m A /trunk/external/fieldtrip/fileio/private/read_tmsi_poly5.m M /trunk/external/fieldtrip/fileio/private/read_tobii_tsv.m M /trunk/external/fieldtrip/fileio/private/read_trigger.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_warp_apply.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_freqanalysis_mvar.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_sourceanalysis.m A /trunk/external/fieldtrip/ft_surfacerealign.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m A /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_progress.m A /trunk/external/fieldtrip/inverse/private/quaternion.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_select_point3d.m M /trunk/external/fieldtrip/plotting/private/ft_progress.m M /trunk/external/fieldtrip/plotting/private/ft_warp_apply.m A /trunk/external/fieldtrip/plotting/private/quaternion.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m A /trunk/external/fieldtrip/private/quaternion.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/unparcellate.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m A /trunk/external/fieldtrip/utilities/ft_hash.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/ft_warp_apply.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_loadvar.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m M /trunk/external/fieldtrip/utilities/private/getdimord.m D /trunk/external/fieldtrip/utilities/private/hashvar.m A /trunk/external/fieldtrip/utilities/private/quaternion.m M /trunk/external/fieldtrip/utilities/private/unparcellate.m update of external/fieldtrip to 8fe2223 ------------------------------------------------------------------------ r6778 | guillaume | 2016-04-22 12:51:29 +0100 (Fri, 22 Apr 2016) | 3 lines Changed paths: M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_full.m M /trunk/tests/ROBOT_DEM.m M /trunk/tests/test_spm_z2p.m * Enhancement: call spm_unlink instead of delete. * Refactoring: use function unit tests. ------------------------------------------------------------------------ r6779 | karl | 2016-04-25 10:40:35 +0100 (Mon, 25 Apr 2016) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Signal detection demo added to MDP active inference ------------------------------------------------------------------------ r6780 | gareth | 2016-04-26 13:24:52 +0100 (Tue, 26 Apr 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m revised cross-validation code ------------------------------------------------------------------------ r6781 | vladimir | 2016-04-27 11:01:38 +0100 (Wed, 27 Apr 2016) | 1 line Changed paths: M /trunk/spm_eeg_planarchannelset.m Bug fix ------------------------------------------------------------------------ r6782 | john | 2016-04-27 12:52:19 +0100 (Wed, 27 Apr 2016) | 2 lines Changed paths: M /trunk/src/spm_diffeo.c Included more error checking to ensure the right datatype. Does not effect SPM as run via the UI. ------------------------------------------------------------------------ r6783 | guillaume | 2016-04-27 13:20:25 +0100 (Wed, 27 Apr 2016) | 2 lines Changed paths: M /trunk/spm_figure.m Bug fix: R2016a chokes on delete(allchild([])). ------------------------------------------------------------------------ r6784 | peter | 2016-04-27 14:12:05 +0100 (Wed, 27 Apr 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_peb_review.m Updated PEB GUI to allow thresholding of parameters based on model evidence ------------------------------------------------------------------------ r6785 | peter | 2016-04-27 15:23:12 +0100 (Wed, 27 Apr 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Bug fix and code simplification to spm_dcm_peb_review.m ------------------------------------------------------------------------ r6786 | karl | 2016-04-27 20:38:30 +0100 (Wed, 27 Apr 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m minor updates to MDP evidence accumulation and rule learning demos ------------------------------------------------------------------------ r6787 | peter | 2016-04-28 12:30:03 +0100 (Thu, 28 Apr 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Upgraded spm_dcm_fmri_check.m to handle arrays of DCMs (GCMs) ------------------------------------------------------------------------ r6788 | peter | 2016-04-28 12:45:23 +0100 (Thu, 28 Apr 2016) | 1 line Changed paths: A /trunk/tests/test_spm_dcm_fmri_check.m Added unit test for spm_dcm_fmri_check.m ------------------------------------------------------------------------ r6789 | peter | 2016-04-28 13:39:58 +0100 (Thu, 28 Apr 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Minor bug fix ------------------------------------------------------------------------ r6790 | guillaume | 2016-04-28 15:30:27 +0100 (Thu, 28 Apr 2016) | 2 lines Changed paths: M /trunk/spm_dcm_loo.m M /trunk/tests/test_spm_dcm_fmri_check.m Enhancement: use testCase syntax and make display optional. ------------------------------------------------------------------------ r6791 | john | 2016-04-28 15:47:20 +0100 (Thu, 28 Apr 2016) | 4 lines Changed paths: M /trunk/toolbox/FieldMap/Makefile M /trunk/toolbox/FieldMap/make_FieldMap.m M /trunk/toolbox/FieldMap/pm_smooth_phasemap.m D /trunk/toolbox/FieldMap/pm_smooth_phasemap_dtj.c D /trunk/toolbox/FieldMap/pm_smooth_phasemap_dtj.mexa64 D /trunk/toolbox/FieldMap/pm_smooth_phasemap_dtj.mexmaci64 D /trunk/toolbox/FieldMap/pm_smooth_phasemap_dtj.mexw32 D /trunk/toolbox/FieldMap/pm_smooth_phasemap_dtj.mexw64 * Removed the need for pm_smooth_phasemap_dtj. The new way of doing things gives the same results, but is much faster. ------------------------------------------------------------------------ r6792 | guillaume | 2016-04-28 18:56:33 +0100 (Thu, 28 Apr 2016) | 2 lines Changed paths: M /trunk/spm_tests.m Enhancement: more options for spm_tests('test',...) ------------------------------------------------------------------------ r6793 | adeel | 2016-05-04 13:18:44 +0100 (Wed, 04 May 2016) | 1 line Changed paths: M /trunk/spm_find_pC.m Small change to sense 'CSD' option ------------------------------------------------------------------------ r6794 | adeel | 2016-05-04 13:19:34 +0100 (Wed, 04 May 2016) | 1 line Changed paths: M /trunk/man/dcm_rs/dcm_rs.tex minor update to manual ------------------------------------------------------------------------ r6795 | spm | 2016-05-06 10:50:19 +0100 (Fri, 06 May 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/hasyokogawa.m M /trunk/external/fieldtrip/forward/private/hasyokogawa.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/private/hasyokogawa.m M /trunk/external/fieldtrip/plotting/private/refine.m M /trunk/external/fieldtrip/preproc/ft_preproc_medianfilter.m M /trunk/external/fieldtrip/private/browse_simpleFFT.m M /trunk/external/fieldtrip/private/refine.m M /trunk/external/fieldtrip/private/statistics_wrapper.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m M /trunk/external/fieldtrip/utilities/private/refine.m update of external/fieldtrip to 26296e9 ------------------------------------------------------------------------ r6796 | guillaume | 2016-05-06 17:18:14 +0100 (Fri, 06 May 2016) | 4 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/spm_results_nidm.m Enhancements: * work in progress for NIDM-Results export 1.3.0. * compact JSON write. ------------------------------------------------------------------------ r6797 | guillaume | 2016-05-06 17:48:08 +0100 (Fri, 06 May 2016) | 2 lines Changed paths: M /trunk/spm_results_nidm.m Enhancement: only serialize to ttl (not provn, pdf). ------------------------------------------------------------------------ r6798 | john | 2016-05-20 12:53:33 +0100 (Fri, 20 May 2016) | 6 lines Changed paths: M /trunk/config/spm_cfg_preproc8.m M /trunk/spm_dicom_header.m M /trunk/spm_preproc8.m M /trunk/toolbox/DARTEL/spm_klaff.m M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m M /trunk/toolbox/Shoot/spm_shoot_kernel.m M /trunk/toolbox/Shoot/spm_shoot_template.m * Added functionality to spm_docom_header to more easily skip reading the header if it does not seem to encode a useful image. * Added comments to various functions showing what should be changed for the next major SPM release. I dare not change these right now. * Modified spm_klaff.m so it may be used with the Shoot toolbox in future. ------------------------------------------------------------------------ r6799 | john | 2016-05-20 17:50:25 +0100 (Fri, 20 May 2016) | 3 lines Changed paths: M /trunk/spm_diffeo.m M /trunk/src/shoot_regularisers.c M /trunk/src/shoot_regularisers.h M /trunk/src/spm_diffeo.c * Added functionality for approximating the traces needed to make registration a bit more probabilistic. ------------------------------------------------------------------------ r6800 | peter | 2016-05-25 10:33:15 +0100 (Wed, 25 May 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Updated spm_dcm_fmri_check.m to display empirical Bayes performance over iterations ------------------------------------------------------------------------ r6801 | karl | 2016-05-29 20:18:06 +0100 (Sun, 29 May 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dot.m M /trunk/spm_fmin.m M /trunk/spm_int_J.m M /trunk/toolbox/DEM/ADEM_learning.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_morphogenesis.m M /trunk/toolbox/DEM/mountaincar_model.mat M /trunk/toolbox/DEM/spm_MDP_VB_X.m temporal link function added to MDP schemes – plus other minor updates ------------------------------------------------------------------------ r6802 | vladimir | 2016-06-03 10:03:34 +0100 (Fri, 03 Jun 2016) | 1 line Changed paths: M /trunk/spm_eeg_average.m minor fix ------------------------------------------------------------------------ r6803 | karl | 2016-06-06 10:45:33 +0100 (Mon, 06 Jun 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Developmental upgrades to MDP schemes ------------------------------------------------------------------------ r6804 | john | 2016-06-08 17:58:48 +0100 (Wed, 08 Jun 2016) | 9 lines Changed paths: M /trunk/@file_array/subsref.m M /trunk/spm_preproc_write8.m * Although I don't think it shouldn't affect any of SPM called via the UI, there was a problem with file_array objects generated by concatenating multiple simple objects. By default, the data type was the the same as the original data, which caused problems when combined with scalefactors. * Now use dimensions and orientation matrix, instead of bounding box and voxel sizes when writing out images in "template space". This was so Parashkev could Segment, based on tissue priors derived from a subject in "native space". ------------------------------------------------------------------------ r6805 | karl | 2016-06-08 21:02:45 +0100 (Wed, 08 Jun 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m development upgrade to NDP schemes ------------------------------------------------------------------------ r6806 | karl | 2016-06-08 21:04:30 +0100 (Wed, 08 Jun 2016) | 1 line Changed paths: M /trunk/spm_int_L.m M /trunk/toolbox/dcm_meeg/spm_dcm_eeg_channelmodes.m bug fix to DCM channel modes (for the case of one source) and bug fix for sparse eigenvector solutions (will need to be checked) ------------------------------------------------------------------------ r6807 | guillaume | 2016-06-10 13:58:35 +0100 (Fri, 10 Jun 2016) | 2 lines Changed paths: M /trunk/spm_orthviews/spm_ov_movie.m Enhancement: replace movie2avi by VideoWriter for R2016b. ------------------------------------------------------------------------ r6808 | guillaume | 2016-06-13 17:48:30 +0100 (Mon, 13 Jun 2016) | 2 lines Changed paths: M /trunk/spm_dcm_connectivity_ui.m M /trunk/spm_eeg_render.m Enhancement: better compatibility with display engine. ------------------------------------------------------------------------ r6809 | peter | 2016-06-15 13:51:55 +0100 (Wed, 15 Jun 2016) | 1 line Changed paths: M /trunk/spm_fieldindices.m Added note pointing out that the outputs are sorted in column order ------------------------------------------------------------------------ r6810 | spm | 2016-06-16 11:11:50 +0100 (Thu, 16 Jun 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/fieldtrip2besa.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/ft_voltype.m M /trunk/external/fieldtrip/fileio/private/getdatfield.m M /trunk/external/fieldtrip/fileio/private/inflate_file.m M /trunk/external/fieldtrip/fileio/private/jaga16_packet.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_egis_data.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_hc.m M /trunk/external/fieldtrip/fileio/private/read_sbin_data.m M /trunk/external/fieldtrip/fileio/private/read_shm_header.m M /trunk/external/fieldtrip/fileio/private/undobalancing.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_fns.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/ft_voltype.m M /trunk/external/fieldtrip/forward/private/eeg_leadfieldb.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/leadfield_openmeeg.m M /trunk/external/fieldtrip/forward/private/undobalancing.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_channelrepair.m M /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_databrowser.m A /trunk/external/fieldtrip/ft_defacemesh.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqcomparison.m M /trunk/external/fieldtrip/ft_freqsimulation.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_qualitycheck.m M /trunk/external/fieldtrip/ft_regressconfound.m M /trunk/external/fieldtrip/ft_removetmsartifact.m M /trunk/external/fieldtrip/ft_sliceinterp.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m A /trunk/external/fieldtrip/ft_timelocksimulation.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m M /trunk/external/fieldtrip/inverse/music.m M /trunk/external/fieldtrip/inverse/private/avgref.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_progress.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/inverse/private/ft_voltype.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_progress.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/ft_voltype.m M /trunk/external/fieldtrip/plotting/private/undobalancing.m M /trunk/external/fieldtrip/private/avgref.m M /trunk/external/fieldtrip/private/channelconnectivity.m M /trunk/external/fieldtrip/private/checkpos.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m M /trunk/external/fieldtrip/private/ft_fetch_vol.m M /trunk/external/fieldtrip/private/getdatfield.m A /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/megplanar_sincos.m M /trunk/external/fieldtrip/private/moviefunction.m A /trunk/external/fieldtrip/private/prepare_cortexhull.m M /trunk/external/fieldtrip/private/prepare_headmodel.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m A /trunk/external/fieldtrip/private/remove_double_vertices.m A /trunk/external/fieldtrip/private/remove_vertices.m D /trunk/external/fieldtrip/private/spearman_binned.m D /trunk/external/fieldtrip/private/spearman_diff.m M /trunk/external/fieldtrip/private/undobalancing.m M /trunk/external/fieldtrip/private/volumefillholes.m M /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_selectdata_new.m M /trunk/external/fieldtrip/utilities/ft_source2grid.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m A /trunk/external/fieldtrip/utilities/ft_warp_dykstra2012.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/base64encode.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m M /trunk/external/fieldtrip/utilities/private/getdatfield.m A /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/undobalancing.m M /trunk/external/fieldtrip/utilities/private/volumefillholes.m M /trunk/external/fieldtrip/utilities/removefields.m update of external/fieldtrip to c43a882 ------------------------------------------------------------------------ r6811 | karl | 2016-06-17 10:55:47 +0100 (Fri, 17 Jun 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m A /trunk/toolbox/DEM/spm_MDP_F.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Extraction of free energies in NDP schemes moved to a separate function ------------------------------------------------------------------------ r6812 | karl | 2016-06-18 12:16:21 +0100 (Sat, 18 Jun 2016) | 2 lines Changed paths: M /trunk/spm_cross.m M /trunk/spm_dot.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m A /trunk/toolbox/DEM/spm_MDP_G.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m more efficient formulations of spm_dot.m and spm_cross.m Bayesian surprise or information gain auxiliary function added for MDP schemes ------------------------------------------------------------------------ r6813 | vladimir | 2016-06-18 19:41:31 +0100 (Sat, 18 Jun 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_reduce.m M /trunk/spm_eeg_montage.m M /trunk/spm_eeg_reduce.m M /trunk/spm_eeg_reduce_pca.m Enhancements to PCA data reduction ------------------------------------------------------------------------ r6814 | karl | 2016-06-19 11:24:46 +0100 (Sun, 19 Jun 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m Further updates to Bayesian model reduction for MDP schemes (active inference) ------------------------------------------------------------------------ r6815 | gareth | 2016-06-20 10:08:18 +0100 (Mon, 20 Jun 2016) | 1 line Changed paths: M /trunk/spm_eeg_invert_classic.m Updated to return list of trials used ------------------------------------------------------------------------ r6816 | gareth | 2016-06-20 10:09:35 +0100 (Mon, 20 Jun 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m got cross validation working properly - now leaving out sensors ------------------------------------------------------------------------ r6817 | vladimir | 2016-06-20 18:10:50 +0100 (Mon, 20 Jun 2016) | 1 line Changed paths: M /trunk/@meeg/private/checkmeeg.m M /trunk/spm_eeg_prep.m Fixes following changes in FT ------------------------------------------------------------------------ r6818 | peter | 2016-06-21 10:42:45 +0100 (Tue, 21 Jun 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_firstlevel.m M /trunk/config/spm_cfg_fmri_design.m M /trunk/config/spm_cfg_fmri_spec.m Added help text to the specify batch, regarding orthogonalising regressors in multiple conditions .mat files ------------------------------------------------------------------------ r6819 | vladimir | 2016-06-22 16:07:42 +0100 (Wed, 22 Jun 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_forward.m Another fix for FT changes ------------------------------------------------------------------------ r6820 | guillaume | 2016-06-23 13:12:47 +0100 (Thu, 23 Jun 2016) | 2 lines Changed paths: M /trunk/spm_getSPM.m Enhancement: don't block in command line mode if model has not been estimated. ------------------------------------------------------------------------ r6821 | vladimir | 2016-06-23 14:25:39 +0100 (Thu, 23 Jun 2016) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m First attempt of ERP simulation functionality ------------------------------------------------------------------------ r6822 | guillaume | 2016-06-23 17:34:00 +0100 (Thu, 23 Jun 2016) | 3 lines Changed paths: M /trunk/spm_preproc_write8.m Bug fix: clean up option in segment didn't differentiate between light and thorough clean. Thanks to Helmut N. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;c7822f18.1602 ------------------------------------------------------------------------ r6823 | guillaume | 2016-06-23 17:51:49 +0100 (Thu, 23 Jun 2016) | 2 lines Changed paths: M /trunk/spm_jsonread.mexmaci64 Bug fix: new compilation of MEX file on Mac OS X 10.9.5 and Clang (600.0.56). ------------------------------------------------------------------------ r6824 | guillaume | 2016-06-27 17:19:51 +0100 (Mon, 27 Jun 2016) | 3 lines Changed paths: M /trunk/spm_uw_estimate.m Bug fix: fix error when Jacobian intensity modulation is used. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;dddd6f77.1606 ------------------------------------------------------------------------ r6825 | vladimir | 2016-07-04 11:03:57 +0100 (Mon, 04 Jul 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_tf_rescale.m M /trunk/spm_eeg_tf_rescale.m Added the option to pool baseline across trials following a paper that showed that baseline correction for single trials introduces bias. ------------------------------------------------------------------------ r6826 | will | 2016-07-04 11:39:39 +0100 (Mon, 04 Jul 2016) | 1 line Changed paths: M /trunk/man/dcm_fnirs/figs/dcm_fit.pdf M /trunk/man/dcm_fnirs/figs/est_conn.pdf M /trunk/man/dcm_fnirs/figs/est_neural.pdf M /trunk/toolbox/dcm_fnirs/spm_fx_fnirs.m Minor update to DCM for fNIRS in response to Serder Ali's email on SPM list ------------------------------------------------------------------------ r6827 | guillaume | 2016-07-04 16:19:35 +0100 (Mon, 04 Jul 2016) | 2 lines Changed paths: M /trunk/spm_est_non_sphericity.m M /trunk/spm_getSPM.m M /trunk/spm_spm.m Enhancement: explicit masking for surface-based data. ------------------------------------------------------------------------ r6828 | karl | 2016-07-06 12:34:25 +0100 (Wed, 06 Jul 2016) | 2 lines Changed paths: M /trunk/spm_diff.m M /trunk/spm_dot.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Upgrade to NDP schemes (belief propagation using martial free energy) Concatenation disabled in spm_diff.m, when the final argument is a cell array ------------------------------------------------------------------------ r6829 | vladimir | 2016-07-07 11:16:46 +0100 (Thu, 07 Jul 2016) | 1 line Changed paths: M /trunk/@meeg/clone.m M /trunk/@meeg/sensors.m M /trunk/config/spm_cfg_eeg_reduce.m M /trunk/spm_eeg_reduce.m Fixes and improvements ------------------------------------------------------------------------ r6830 | bernadette | 2016-07-07 12:29:16 +0100 (Thu, 07 Jul 2016) | 1 line Changed paths: M /trunk/spm_eeg_cfc.m Changed colormap ------------------------------------------------------------------------ r6831 | vladimir | 2016-07-08 13:10:45 +0100 (Fri, 08 Jul 2016) | 1 line Changed paths: M /trunk/@meeg/history.m Fix for the case of cell array of Ds. ------------------------------------------------------------------------ r6832 | karl | 2016-07-11 10:28:44 +0100 (Mon, 11 Jul 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Development work on deep temporal models (for NDP schemes) ------------------------------------------------------------------------ r6833 | guillaume | 2016-07-12 11:22:40 +0100 (Tue, 12 Jul 2016) | 2 lines Changed paths: M /trunk/spm_int_L.m Enhancement: robustify computation of eigenvalues. ------------------------------------------------------------------------ r6834 | gareth | 2016-07-14 08:55:46 +0100 (Thu, 14 Jul 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_vbecd.m updated vbecd to return weights mapping to single dipole orientation ------------------------------------------------------------------------ r6835 | vladimir | 2016-07-14 17:08:56 +0100 (Thu, 14 Jul 2016) | 1 line Changed paths: M /trunk/spm_eeg_montage.m Refinement to how non-contributing channels are handled. ------------------------------------------------------------------------ r6836 | karl | 2016-07-15 10:43:30 +0100 (Fri, 15 Jul 2016) | 1 line Changed paths: M /trunk/spm_diff.m Reversion of bug in spm_diff.m ------------------------------------------------------------------------ r6837 | guillaume | 2016-07-20 12:08:50 +0100 (Wed, 20 Jul 2016) | 2 lines Changed paths: M /trunk/man/manual.pdf Doc: new compilation of the PDF manual. ------------------------------------------------------------------------ r6838 | spm | 2016-07-22 17:25:42 +0100 (Fri, 22 Jul 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/bigendian.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/cstructdecode.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/fixinside.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/ft_senslabel.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/littleendian.m M /trunk/external/fieldtrip/fileio/private/loadama.m M /trunk/external/fieldtrip/fileio/private/pos2dim.m M /trunk/external/fieldtrip/fileio/private/read_asa_bnd.m M /trunk/external/fieldtrip/fileio/private/read_asa_dip.m M /trunk/external/fieldtrip/fileio/private/read_asa_mri.m M /trunk/external/fieldtrip/fileio/private/read_asa_msr.m M /trunk/external/fieldtrip/fileio/private/read_asa_vol.m M /trunk/external/fieldtrip/fileio/private/read_biff.m M /trunk/external/fieldtrip/fileio/private/read_biosemi_bdf.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_pos.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vhdr.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vmrk.m M /trunk/external/fieldtrip/fileio/private/read_bv_srf.m M /trunk/external/fieldtrip/fileio/private/read_ced_son.m M /trunk/external/fieldtrip/fileio/private/read_ctf_ascii.m M /trunk/external/fieldtrip/fileio/private/read_ctf_dat.m M /trunk/external/fieldtrip/fileio/private/read_ctf_hdm.m M /trunk/external/fieldtrip/fileio/private/read_ctf_mri.m M /trunk/external/fieldtrip/fileio/private/read_ctf_sens.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shape.m M /trunk/external/fieldtrip/fileio/private/read_eeglabdata.m M /trunk/external/fieldtrip/fileio/private/read_eeglabheader.m M /trunk/external/fieldtrip/fileio/private/read_egis_data.m M /trunk/external/fieldtrip/fileio/private/read_elec.m M /trunk/external/fieldtrip/fileio/private/read_erplabdata.m M /trunk/external/fieldtrip/fileio/private/read_fcdc_trl.m M /trunk/external/fieldtrip/fileio/private/read_lay.m M /trunk/external/fieldtrip/fileio/private/read_mat.m M /trunk/external/fieldtrip/fileio/private/read_mpi_dap.m A /trunk/external/fieldtrip/fileio/private/read_nervus_data.m A /trunk/external/fieldtrip/fileio/private/read_nervus_header.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_bin.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_cds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nev.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nts.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_sdma.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ttl.m M /trunk/external/fieldtrip/fileio/private/read_ns_eeg.m M /trunk/external/fieldtrip/fileio/private/read_off.m M /trunk/external/fieldtrip/fileio/private/read_plexon_nex.m M /trunk/external/fieldtrip/fileio/private/read_shm_event.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_event.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_header.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_header_new.m M /trunk/external/fieldtrip/fileio/private/write_edf.m M /trunk/external/fieldtrip/fileio/private/write_gdf.m M /trunk/external/fieldtrip/fileio/private/write_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/write_neuralynx_nts.m M /trunk/external/fieldtrip/fileio/private/write_plexon_nex.m M /trunk/external/fieldtrip/fileio/private/write_stl.m M /trunk/external/fieldtrip/fileio/private/yokogawa2grad_new.m M /trunk/external/fieldtrip/fileio/private/yokogawa2vol.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_senslabel.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/private/channelposition.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/get_dip_halfspace.m M /trunk/external/fieldtrip/forward/private/leadfield_openmeeg.m M /trunk/external/fieldtrip/forward/private/loadama.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/private/SAM_costfun.m M /trunk/external/fieldtrip/inverse/private/calctangent.m M /trunk/external/fieldtrip/inverse/private/find_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_senslabel.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/inverse/private/mkfilt_eloreta_v2.m M /trunk/external/fieldtrip/inverse/private/settang.m M /trunk/external/fieldtrip/plotting/ft_plot_crosshair.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/private/channelposition.m M /trunk/external/fieldtrip/plotting/private/fixpos.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/private/ft_senslabel.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/ptriprojn.m M /trunk/external/fieldtrip/private/channelposition.m M /trunk/external/fieldtrip/private/fixinside.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/interp_gridded.m M /trunk/external/fieldtrip/private/interp_ungridded.m M /trunk/external/fieldtrip/private/pos2dim.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/remove_vertices.m M /trunk/external/fieldtrip/specest/private/alpha_taper.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff_itc.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesZcoh.m M /trunk/external/fieldtrip/statfun/ft_statfun_mean.m M /trunk/external/fieldtrip/statfun/ft_statfun_pooledT.m M /trunk/external/fieldtrip/statfun/ft_statfun_roc.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m A /trunk/external/fieldtrip/utilities/ft_test_result.m A /trunk/external/fieldtrip/utilities/ft_test_run.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/private/channelposition.m M /trunk/external/fieldtrip/utilities/private/fixinside.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/ft_platform_supports.m A /trunk/external/fieldtrip/utilities/private/ft_struct2json.m A /trunk/external/fieldtrip/utilities/private/ft_urlread.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/pos2dim.m update of external/fieldtrip to f48b982 ------------------------------------------------------------------------ r6839 | spm | 2016-07-22 17:38:22 +0100 (Fri, 22 Jul 2016) | 1 line Changed paths: A /trunk/external/eeprobe/AUTHORS A /trunk/external/eeprobe/LICENSE A /trunk/external/eeprobe/LICENSE.addendum M /trunk/external/eeprobe/README D /trunk/external/eeprobe/Read_Me.txt A /trunk/external/eeprobe/VERSION M /trunk/external/eeprobe/read_eep_avr.c M /trunk/external/eeprobe/read_eep_avr.m M /trunk/external/eeprobe/read_eep_avr.mexa64 M /trunk/external/eeprobe/read_eep_avr.mexmaci64 M /trunk/external/eeprobe/read_eep_avr.mexw64 M /trunk/external/eeprobe/read_eep_cnt.c M /trunk/external/eeprobe/read_eep_cnt.m M /trunk/external/eeprobe/read_eep_cnt.mexa64 M /trunk/external/eeprobe/read_eep_cnt.mexmaci64 M /trunk/external/eeprobe/read_eep_cnt.mexw64 M /trunk/external/eeprobe/read_eep_rej.m A /trunk/external/eeprobe/read_eep_trg.c M /trunk/external/eeprobe/read_eep_trg.m A /trunk/external/eeprobe/read_eep_trg.mexa64 A /trunk/external/eeprobe/read_eep_trg.mexmaci64 A /trunk/external/eeprobe/read_eep_trg.mexw64 A /trunk/external/eeprobe/read_eep_trial.m A /trunk/external/eeprobe/write_eep_avr.c A /trunk/external/eeprobe/write_eep_avr.m A /trunk/external/eeprobe/write_eep_avr.mexa64 A /trunk/external/eeprobe/write_eep_avr.mexmaci64 A /trunk/external/eeprobe/write_eep_avr.mexw64 A /trunk/external/eeprobe/write_eep_cnt.c A /trunk/external/eeprobe/write_eep_cnt.m A /trunk/external/eeprobe/write_eep_cnt.mexa64 A /trunk/external/eeprobe/write_eep_cnt.mexmaci64 A /trunk/external/eeprobe/write_eep_cnt.mexw64 update of external/eeprobe using libeep-3.3.173 and MEX files from FieldTrip ------------------------------------------------------------------------ r6840 | guillaume | 2016-07-25 13:21:25 +0100 (Mon, 25 Jul 2016) | 3 lines Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_run_gunzip_files.m M /trunk/matlabbatch/cfg_basicio/cfg_run_gzip_files.m M /trunk/matlabbatch/private/cfg_onscreen.m * gzip/gunzip: individual files can be written to their own directory. * Fix typo for Root property MonitorPositions. ------------------------------------------------------------------------ r6841 | vladimir | 2016-07-26 14:47:39 +0100 (Tue, 26 Jul 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/plotting/ft_plot_sens.m Temporary fix to prevent crashing until there is a proper fix in FT. ------------------------------------------------------------------------ r6842 | guillaume | 2016-07-28 10:02:10 +0100 (Thu, 28 Jul 2016) | 2 lines Changed paths: M /trunk/spm_spm.m Bug fix: fix crash for volume-based explicit masks. Thanks to Micah A. ------------------------------------------------------------------------ r6843 | vladimir | 2016-07-28 11:55:47 +0100 (Thu, 28 Jul 2016) | 1 line Changed paths: M /trunk/spm_eeg_reduce.m M /trunk/spm_eeg_reduce_imagcsd.m Minor fixes ------------------------------------------------------------------------ r6844 | john | 2016-07-28 21:02:34 +0100 (Thu, 28 Jul 2016) | 10 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/Longitudinal/spm_rice_mixture.m M /trunk/toolbox/Shoot/covLin.m M /trunk/toolbox/Shoot/spm_GPclass.m * Fixed a bug in computing derivatives for the rigid registration part of the longitudinal registration, which wasn't properly accounting for the nonlinear warps. It probably only makes a small difference in practice because the longitudinal changes are only small. * Problems with MATLAB versions and the random number seeding in spm_GPclass.m. Also tried to make the algorithm more stable by tweaking covLin.m slightly, so that hyperparameters don't go ridiculously small or ridiculously large. * Added documentation to spm_rice_mixture, to help Mikael understand the code better. ------------------------------------------------------------------------ r6845 | vladimir | 2016-07-29 16:23:46 +0100 (Fri, 29 Jul 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_checkdatareg.m Adjusting the code to changes in ft_plot_sens ------------------------------------------------------------------------ r6846 | guillaume | 2016-07-29 17:29:38 +0100 (Fri, 29 Jul 2016) | 2 lines Changed paths: A /trunk/spm_BIDS.m New feature: initial support for BIDS (Brain Imaging Data Structure). ------------------------------------------------------------------------ r6847 | karl | 2016-07-30 11:35:32 +0100 (Sat, 30 Jul 2016) | 1 line Changed paths: A /trunk/spm_eeg_inv_vbecd_gui_new.m A /trunk/spm_eeg_wrap_dipfit_vbecd_new.m temporary upgrade of VB for ECD ------------------------------------------------------------------------ r6848 | karl | 2016-07-30 11:36:29 +0100 (Sat, 30 Jul 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m minor upgrade of reading demo ------------------------------------------------------------------------ r6849 | karl | 2016-07-31 13:34:33 +0100 (Sun, 31 Jul 2016) | 1 line Changed paths: A /trunk/spm_eeg_inv_vb_ecd_gui.m M /trunk/spm_eeg_invert_ui.m M /trunk/spm_eeg_lgainmat.m D /trunk/spm_eeg_wrap_dipfit_vbecd_new.m M /trunk/spm_log_evidence_reduce.m Revision of variational EEG source reconstruction ------------------------------------------------------------------------ r6850 | karl | 2016-07-31 13:41:55 +0100 (Sun, 31 Jul 2016) | 1 line Changed paths: D /trunk/spm_eeg_inv_vbecd_gui_new.m ------------------------------------------------------------------------ r6851 | vladimir | 2016-08-01 13:48:29 +0100 (Mon, 01 Aug 2016) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m Fix to take missing parameters from the full model as suggested by Karl. ------------------------------------------------------------------------ r6852 | vladimir | 2016-08-01 13:48:44 +0100 (Mon, 01 Aug 2016) | 1 line Changed paths: M /trunk/spm_eeg_reduce_imagcsd.m Bug fix ------------------------------------------------------------------------ r6853 | karl | 2016-08-02 09:29:03 +0100 (Tue, 02 Aug 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_vb_ecd_gui.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m A /trunk/toolbox/DEM/spm_MDP_VB_ERP.m development work on reading demo ------------------------------------------------------------------------ r6854 | karl | 2016-08-06 11:04:19 +0100 (Sat, 06 Aug 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_vb_ecd_gui.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Completion of reading demonstration using active inference (NDP) ------------------------------------------------------------------------ r6855 | karl | 2016-08-06 11:06:35 +0100 (Sat, 06 Aug 2016) | 1 line Changed paths: A /trunk/spm_dcm_fmri_nmm.m M /trunk/spm_fx_fmri.m M /trunk/spm_fx_hdm.m A /trunk/spm_gen_fmri.m M /trunk/spm_gx_hdm.m M /trunk/spm_int_L.m A /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m M /trunk/toolbox/Neural_Models/Neural_demo.fig M /trunk/toolbox/Neural_Models/Neural_demo.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_int_U.m combined neural mass modelling and DCM for fMRI – initial development work ------------------------------------------------------------------------ r6856 | karl | 2016-08-10 18:55:05 +0100 (Wed, 10 Aug 2016) | 1 line Changed paths: M /trunk/spm_bilinear_condition.m M /trunk/spm_bireduce.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_evidence.m M /trunk/spm_dcm_fmri_nmm.m M /trunk/spm_dcm_mtf.m M /trunk/spm_dot.m M /trunk/spm_fx_hdm.m M /trunk/spm_gen_fmri.m M /trunk/spm_gx_hdm.m M /trunk/spm_int.m M /trunk/spm_log_evidence.m M /trunk/spm_plot_ci.m M /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m M /trunk/toolbox/Neural_Models/spm_delays_demo.m M /trunk/toolbox/Neural_Models/spm_induced_optimise.m M /trunk/toolbox/Neural_Models/spm_induced_optimise_parameters.m M /trunk/toolbox/Neural_Models/spm_lfp_demo.m M /trunk/toolbox/Neural_Models/spm_mtf_demo.m M /trunk/toolbox/Neural_Models/spm_seizure_demo.m M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_csd_int.m M /trunk/toolbox/dcm_meeg/spm_csd_mtf_gu.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_tfm.m M /trunk/toolbox/dcm_meeg/spm_tfm_priors.m Beta level completion of DCM for fMRI using neural masses models ------------------------------------------------------------------------ r6857 | karl | 2016-08-19 16:17:06 +0100 (Fri, 19 Aug 2016) | 1 line Changed paths: M /trunk/spm_gen_fmri.m M /trunk/spm_morlet_conv.m M /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_tfm.m Mine revisions to DCM for fMRI with neural mass models ------------------------------------------------------------------------ r6858 | karl | 2016-08-19 16:17:52 +0100 (Fri, 19 Aug 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m Minor adjustments to reading DEM/DEM_demo_MDP_reading.m ------------------------------------------------------------------------ r6859 | guillaume | 2016-08-24 17:46:16 +0100 (Wed, 24 Aug 2016) | 2 lines Changed paths: M /trunk/spm_invNcdf.m A /trunk/tests/test_spm_invNcdf.m Enhancement: use erfcinv(x) instead of erfinv(1-x) for better numerical precision. ------------------------------------------------------------------------ r6860 | guillaume | 2016-08-25 13:00:10 +0100 (Thu, 25 Aug 2016) | 2 lines Changed paths: M /trunk/spm_mesh_get_lm.m M /trunk/spm_mesh_max.m M /trunk/tests/test_spm_invNcdf.m M /trunk/tests/test_spm_mesh_get_lm.m Bug fix: deal with empty excursion set. ------------------------------------------------------------------------ r6861 | spm | 2016-08-25 13:07:59 +0100 (Thu, 25 Aug 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/getdatfield.m D /trunk/external/fieldtrip/fileio/private/read_lay.m A /trunk/external/fieldtrip/fileio/private/read_nihonkohden_hdr.m A /trunk/external/fieldtrip/fileio/private/read_nihonkohden_m00.m M /trunk/external/fieldtrip/forward/private/mesh2edge.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/mesh2edge.m M /trunk/external/fieldtrip/private/getdatfield.m M /trunk/external/fieldtrip/private/mesh2edge.m A /trunk/external/fieldtrip/private/poly2tri.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_test_result.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/getdatfield.m update of external/fieldtrip to 0979eda ------------------------------------------------------------------------ r6862 | guillaume | 2016-08-25 15:42:19 +0100 (Thu, 25 Aug 2016) | 3 lines Changed paths: M /trunk/spm_BIDS.m M /trunk/spm_eeg_inv_group.m M /trunk/spm_figure.m M /trunk/spm_standalone.m Enhancements: small improvements for standalone SPM. (change in spm_eeg_inv_group.m relates to conflict with eeglab) ------------------------------------------------------------------------ r6863 | guillaume | 2016-08-30 15:56:27 +0100 (Tue, 30 Aug 2016) | 2 lines Changed paths: M /trunk/spm_jsonread.m M /trunk/spm_jsonwrite.m M /trunk/src/spm_jsonread.c D /trunk/tests/test_jsonread.m M /trunk/tests/test_spm_BMS_gibbs.m M /trunk/tests/test_spm_dcm_simulate.m A /trunk/tests/test_spm_jsonread.m (from /trunk/tests/test_jsonread.m:6862) A /trunk/tests/test_spm_jsonwrite.m Enhancement: improve compatibility between spm_jsonread/write and jsondecode/encode. ------------------------------------------------------------------------ r6864 | guillaume | 2016-08-31 16:21:00 +0100 (Wed, 31 Aug 2016) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c M /trunk/tests/test_spm_dcm_simulate.m M /trunk/tests/test_spm_jsonread.m Enhancement: handle 2D arrays in JSON. ------------------------------------------------------------------------ r6865 | guillaume | 2016-08-31 17:49:57 +0100 (Wed, 31 Aug 2016) | 2 lines Changed paths: M /trunk/spm_diffeo.mexw32 M /trunk/spm_diffeo.mexw64 M /trunk/spm_field.mexw32 M /trunk/spm_field.mexw64 M /trunk/spm_jsonread.mexa64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_jsonread.mexw32 M /trunk/spm_jsonread.mexw64 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mesh_utils.mexw64 M /trunk/tests/test_spm_BMS_gibbs.m M /trunk/tests/test_spm_dcm_simulate.m New compilation of recently modified MEX files. ------------------------------------------------------------------------ r6866 | karl | 2016-09-05 10:19:42 +0100 (Mon, 05 Sep 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/ADEM_sample_image.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m A /trunk/toolbox/DEM/spm_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_dem_search_movie.m M /trunk/toolbox/DEM/spm_fx_dem_reach.m Addition of hybrid hierarchical models in DEM Toolbox (early development work) ------------------------------------------------------------------------ r6867 | guillaume | 2016-09-12 16:04:44 +0100 (Mon, 12 Sep 2016) | 2 lines Changed paths: M /trunk/spm_mesh_get_lm.m M /trunk/spm_mesh_render.m M /trunk/tests/test_spm_mesh_get_lm.m Bug fix: local maxima when domain only contains singletons. ------------------------------------------------------------------------ r6868 | spm | 2016-09-12 16:10:12 +0100 (Mon, 12 Sep 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m update of external/fieldtrip to a22278d ------------------------------------------------------------------------ r6869 | guillaume | 2016-09-12 17:11:01 +0100 (Mon, 12 Sep 2016) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c M /trunk/tests/test_spm_jsonread.m Enhancement: slight improvements for nD arrays in json import. ------------------------------------------------------------------------ r6870 | guillaume | 2016-09-12 17:46:55 +0100 (Mon, 12 Sep 2016) | 2 lines Changed paths: M /trunk/spm_jsonread.mexa64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_jsonread.mexw32 M /trunk/spm_jsonread.mexw64 New compilation of MEX file folloginw r6869. ------------------------------------------------------------------------ r6871 | gareth | 2016-09-13 12:31:05 +0100 (Tue, 13 Sep 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m A /trunk/spm_eeg_inv_prep_modes_xval.m New function spm_eeg_inv_prep_modes_xval.m to support preparation of cross validation runs and minor mods of spm_cfg_eeg_inv_invertiter.m to make this compatible ------------------------------------------------------------------------ r6872 | guillaume | 2016-09-14 13:12:41 +0100 (Wed, 14 Sep 2016) | 1 line Changed paths: M /trunk/spm_results_nidm.m Enhancement: NIDM-Results export updated to 1.3.0. ------------------------------------------------------------------------ r6873 | guillaume | 2016-09-14 15:29:30 +0100 (Wed, 14 Sep 2016) | 1 line Changed paths: M /trunk/spm_results_nidm.m New feature: upload to NeuroVault. ------------------------------------------------------------------------ r6874 | peter | 2016-09-15 10:29:34 +0100 (Thu, 15 Sep 2016) | 1 line Changed paths: A /trunk/spm_dcm_peb_to_gcm.m M /trunk/spm_dcm_simulate.m Added spm_dcm_peb_to_gcm to create a group of simulated DCMs GCM) from a PEB structure. ------------------------------------------------------------------------ r6875 | peter | 2016-09-15 10:30:18 +0100 (Thu, 15 Sep 2016) | 1 line Changed paths: A /trunk/tests/test_spm_dcm_peb_to_gcm.m Added unit test for spm_dcm_peb_to_gcm ------------------------------------------------------------------------ r6876 | guillaume | 2016-09-15 11:27:19 +0100 (Thu, 15 Sep 2016) | 2 lines Changed paths: M /trunk/spm_tests.m Enhancement: using version 13 of the TAP format for continuous integration. ------------------------------------------------------------------------ r6877 | vladimir | 2016-09-15 15:09:36 +0100 (Thu, 15 Sep 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_to_gcm.m Fix for the ERP case ------------------------------------------------------------------------ r6878 | gareth | 2016-09-16 08:57:06 +0100 (Fri, 16 Sep 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg.m M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/spm_eeg_inv_prep_modes_xval.m Removed incomplete functions from MEG source inversion menu. Corrected errors in cross-validation code. ------------------------------------------------------------------------ r6879 | peter | 2016-09-17 18:45:08 +0100 (Sat, 17 Sep 2016) | 1 line Changed paths: M /trunk/spm_dcm_bma.m M /trunk/spm_dcm_bmr.m M /trunk/spm_dcm_bmr_all.m Fixed plotting issue in spm_dcm_bmr_all, changing BMA.Cp to be a covariance matrix. Fixed RCM/BMA output in spm_dcm_bmr. Added input validation to spm_dcm_bma. ------------------------------------------------------------------------ r6880 | peter | 2016-09-17 19:00:38 +0100 (Sat, 17 Sep 2016) | 1 line Changed paths: M /trunk/spm_dcm_bpa.m A /trunk/tests/test_spm_dcm_bpa.m Fixes to spm_dcm_bpa - corrected Pp calculation and clarified variable names ------------------------------------------------------------------------ r6881 | john | 2016-09-19 10:48:54 +0100 (Mon, 19 Sep 2016) | 6 lines Changed paths: M /trunk/spm_mrf.m M /trunk/spm_preproc_write8.m M /trunk/toolbox/Shoot/covLin.m M /trunk/toolbox/Shoot/spm_GPclass.m * Fixed the problems with applying MRFs when segmenting images with large voxel sizes (spm_mrf.m & spm_preproc_write8.m). * Modification to the GP classification to enable multi-kernel learning (along with some tweeks to try to make it more stable and possibly faster). ------------------------------------------------------------------------ r6882 | peter | 2016-09-19 13:14:50 +0100 (Mon, 19 Sep 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_bmc.m Fixed plotting issue in spm_dcm_peb_bmc.m ------------------------------------------------------------------------ r6883 | vladimir | 2016-09-19 14:42:05 +0100 (Mon, 19 Sep 2016) | 1 line Changed paths: M /trunk/@meeg/history.m add SPM version to history ------------------------------------------------------------------------ r6884 | vladimir | 2016-09-19 15:07:46 +0100 (Mon, 19 Sep 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/spm_eeg_inv_checkdatareg.m fixed some plotting issues ------------------------------------------------------------------------ r6885 | vladimir | 2016-09-19 16:54:29 +0100 (Mon, 19 Sep 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invert.m removed the options that don't work according to Jose ------------------------------------------------------------------------ r6886 | spm | 2016-09-19 17:19:19 +0100 (Mon, 19 Sep 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/fixsampleinfo.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_eeglabevent.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_hc.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_evolution.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_signals.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_spikes.m M /trunk/external/fieldtrip/fileio/private/read_nex_event.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_progress.m M /trunk/external/fieldtrip/plotting/private/ft_progress.m M /trunk/external/fieldtrip/private/fixdimord.m M /trunk/external/fieldtrip/private/fixsampleinfo.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/univariate2bivariate.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/ft_warp_optim.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m M /trunk/external/fieldtrip/utilities/private/fixsampleinfo.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_debug.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_loadvar.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_trackconfig.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/sn2individual.m update of external/fieldtrip to 515f9dd ------------------------------------------------------------------------ r6887 | gareth | 2016-09-20 09:01:36 +0100 (Tue, 20 Sep 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/spm_eeg_inv_prep_modes_xval.m updated cross val to give k-fold cross validation without repeating channels ------------------------------------------------------------------------ r6888 | peter | 2016-09-21 11:52:45 +0100 (Wed, 21 Sep 2016) | 1 line Changed paths: M /trunk/config/spm_run_dcm_bms.m Fixed bug in BMS data validation batch for fMRI ------------------------------------------------------------------------ r6889 | peter | 2016-09-22 11:54:25 +0100 (Thu, 22 Sep 2016) | 1 line Changed paths: M /trunk/spm_dcm_loo.m Fix for Matlab 2016b ------------------------------------------------------------------------ r6890 | vladimir | 2016-09-28 14:34:47 +0100 (Wed, 28 Sep 2016) | 1 line Changed paths: M /trunk/spm_eeg_history.m updated the human readable names ------------------------------------------------------------------------ r6891 | guillaume | 2016-09-29 14:38:25 +0100 (Thu, 29 Sep 2016) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c Bug fix: duplicate keys are ignored during JSON parsing (and only the last one is remembered). ------------------------------------------------------------------------ r6892 | guillaume | 2016-09-30 13:56:35 +0100 (Fri, 30 Sep 2016) | 2 lines Changed paths: M /trunk/spm_design_contrasts.m Bug fix: handle conditions with multiple parametric modulators. Thanks to Carsten A. ------------------------------------------------------------------------ r6893 | spm | 2016-09-30 16:56:10 +0100 (Fri, 30 Sep 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/external/signal/butter.m M /trunk/external/fieldtrip/external/signal/hanning.m M /trunk/external/fieldtrip/external/signal/hilbert.m M /trunk/external/fieldtrip/external/stats/README M /trunk/external/fieldtrip/external/stats/tcdf.m M /trunk/external/fieldtrip/fileio/private/ft_senslabel.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/forward/ft_senslabel.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/private/ft_senslabel.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/private/ft_senslabel.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m update of external/fieldtrip to 5d2f909 ------------------------------------------------------------------------ r6894 | spm | 2016-09-30 17:48:46 +0100 (Fri, 30 Sep 2016) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_check_orientations.m M /trunk/spm_dcm_loo.m M /trunk/spm_est_smoothness.m M /trunk/spm_load.m M /trunk/spm_percentile.m M /trunk/spm_print.m M /trunk/spm_spy.m M /trunk/toolbox/OldSeg/spm_cfg_preproc.m M /trunk/toolbox/OldSeg/spm_preproc_write.m Enhancement: minor adjustments. ------------------------------------------------------------------------ r6895 | guillaume | 2016-10-03 12:08:49 +0100 (Mon, 03 Oct 2016) | 2 lines Changed paths: M /trunk/@gifti/private/read_gifti_file.m Enhancement: robustify GIfTI reading for ill-formed files with missing CoordinateSystemTransformMatrix. ------------------------------------------------------------------------ r6896 | guillaume | 2016-10-03 17:53:31 +0100 (Mon, 03 Oct 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_results.m M /trunk/config/spm_run_results.m Enhancement: merge "print" and "write" into "export" in Results Report module. ------------------------------------------------------------------------ r6897 | guillaume | 2016-10-03 18:16:29 +0100 (Mon, 03 Oct 2016) | 2 lines Changed paths: M /trunk/config/spm_rewrite_job.m Enhancement: add backward compatibility to "Results report" batches saved before r6896. ------------------------------------------------------------------------ r6898 | guillaume | 2016-10-04 18:06:23 +0100 (Tue, 04 Oct 2016) | 2 lines Changed paths: M /trunk/config/spm_rewrite_job.m M /trunk/spm_results_nidm.m Bug fix: small fix for NIDM-Results 1.3.0. ------------------------------------------------------------------------ r6899 | volkmar | 2016-10-07 09:23:34 +0100 (Fri, 07 Oct 2016) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Silence error message for unsupported spect image data. ------------------------------------------------------------------------ r6900 | karl | 2016-10-08 14:16:46 +0100 (Sat, 08 Oct 2016) | 1 line Changed paths: M /trunk/spm_dcm_delay.m M /trunk/toolbox/Neural_Models/spm_delays_demo.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_erp_priors.m Option added to remove self delays (current to voltage) in DCM for EEG (intrinsic delays now fixed for ERP and CMC models) ------------------------------------------------------------------------ r6901 | karl | 2016-10-08 14:21:41 +0100 (Sat, 08 Oct 2016) | 1 line Changed paths: M /trunk/spm_ADEM.m M /trunk/spm_cross.m M /trunk/toolbox/DEM/ADEM_salience.m M /trunk/toolbox/DEM/ADEM_sample_image.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m A /trunk/toolbox/DEM/bird.nii A /trunk/toolbox/DEM/cats.nii A /trunk/toolbox/DEM/null.nii A /trunk/toolbox/DEM/seed.nii M /trunk/toolbox/DEM/spm_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m A /trunk/toolbox/DEM/spm_dem_mdp_movie.m M /trunk/toolbox/DEM/spm_dem_search_movie.m M /trunk/toolbox/DEM/spm_gx_dem_salience.m addition of hybrid demos combining MDP and DEM schemes (in the context of visual searches) ------------------------------------------------------------------------ r6902 | karl | 2016-10-08 20:28:25 +0100 (Sat, 08 Oct 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor bug fix for spm_MDP_VB_X ------------------------------------------------------------------------ r6903 | guillaume | 2016-10-12 12:36:41 +0100 (Wed, 12 Oct 2016) | 2 lines Changed paths: M /trunk/spm_list.m M /trunk/spm_platform.m M /trunk/spm_provenance.m M /trunk/spm_results_nidm.m New feature: NIDM-Results serialisation in PROV-JSONLD. ------------------------------------------------------------------------ r6904 | vladimir | 2016-10-20 13:04:59 +0100 (Thu, 20 Oct 2016) | 1 line Changed paths: M /trunk/spm_eeg_combineplanar.m Fix following a change in FT code ------------------------------------------------------------------------ r6905 | guillaume | 2016-10-20 16:00:48 +0100 (Thu, 20 Oct 2016) | 1 line Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.3. ------------------------------------------------------------------------ r6907 | vladimir | 2016-10-21 10:41:59 +0100 (Fri, 21 Oct 2016) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_erp_correction.m bug fix (thanks to Paul) ------------------------------------------------------------------------ r6908 | guillaume | 2016-10-21 12:29:25 +0100 (Fri, 21 Oct 2016) | 2 lines Changed paths: M /trunk/spm_create_vol.m A /trunk/tests/test_spm_create_vol.m Bug fix: fix an issue with a multidimensional image volume and missing fields. Added tests. Thanks to Carsten A. ------------------------------------------------------------------------ r6909 | peter | 2016-10-21 14:15:28 +0100 (Fri, 21 Oct 2016) | 1 line Changed paths: A /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nmm.m (from /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m:6908) D /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m Renamed neural mass model demo (nnm -> nmm) ------------------------------------------------------------------------ r6910 | guillaume | 2016-10-24 17:20:03 +0100 (Mon, 24 Oct 2016) | 2 lines Changed paths: M /trunk/spm_contrasts.m M /trunk/spm_spm.m Enhancement: try to obtain geometry from first file in the absence of the SurfaceID metadata, following discussion with Christian G. ------------------------------------------------------------------------ r6911 | guillaume | 2016-10-26 13:10:58 +0100 (Wed, 26 Oct 2016) | 2 lines Changed paths: A /trunk/spm_mesh_join.m M /trunk/spm_mesh_render.m M /trunk/spm_mesh_split.m New feature: display multiple meshes at once. ------------------------------------------------------------------------ r6912 | guillaume | 2016-10-26 15:50:53 +0100 (Wed, 26 Oct 2016) | 2 lines Changed paths: M /trunk/spm_mesh_join.m M /trunk/spm_mesh_render.m Enhancement: also allow multiple mesh files when changing geometry. ------------------------------------------------------------------------ r6913 | guillaume | 2016-10-31 10:12:27 +0000 (Mon, 31 Oct 2016) | 2 lines Changed paths: M /trunk/spm_est_non_sphericity.m Bug fix: fix crash for volume-based explicit masks (introduced in r6827 and only partially fixed in r6842). Thanks to Christophe P. ------------------------------------------------------------------------ r6914 | guillaume | 2016-11-01 12:26:16 +0000 (Tue, 01 Nov 2016) | 13 lines Changed paths: M /trunk/external/eeprobe/read_eep_avr.mexa64 M /trunk/external/eeprobe/read_eep_cnt.mexa64 M /trunk/external/eeprobe/read_eep_trg.mexa64 M /trunk/external/eeprobe/write_eep_avr.mexa64 M /trunk/external/eeprobe/write_eep_cnt.mexa64 New compilation on 64bit Linux of eeprobe MEX files using libeep: http://download.ant-neuro.com/libeep/libeep-3.3.173.tar.gz setenv MATLAB /usr/local/MATLAB/R2010a ./configure --enable-matlab --enable-shared=no CFLAGS=-fPIC make distclean && make Two fixes: * read_eep_cnt.c comments /* */ * compilation of read_eep_trg.c from libeep-3.3.173/mex: /usr/local/MATLAB/R2007a/bin/mex -O -I../src matlab/read_eep_trg.c -o matlab/read_eep_trg.mexa64 -L../src/.libs -leep ------------------------------------------------------------------------ r6915 | peter | 2016-11-01 17:38:08 +0000 (Tue, 01 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb_review.m A /trunk/tests/test_spm_dcm_bmr_all.m Added unit test for spm_dcm_bmr_all and updated documentation. Minor update to tooltip text in spm_dcm_peb_review.m ------------------------------------------------------------------------ r6916 | peter | 2016-11-01 18:56:44 +0000 (Tue, 01 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Minor bug fix for sparse inputs ------------------------------------------------------------------------ r6917 | karl | 2016-11-02 14:25:08 +0000 (Wed, 02 Nov 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/Neural_Models/spm_dcm_prior_responses.m minor prettiness changes ------------------------------------------------------------------------ r6918 | guillaume | 2016-11-02 14:33:11 +0000 (Wed, 02 Nov 2016) | 5 lines Changed paths: M /trunk/config/spm_cfg_cat.m M /trunk/config/spm_cfg_st.m M /trunk/matlabbatch/cfg_basicio/cfg_cfg_basicio.m M /trunk/matlabbatch/cfg_basicio/cfg_run_file_fplist.m M /trunk/spm_read_vols.m Enhancements: * allow unexpanded 4D file in slice timing correction batch interface. * "move/copy/delete directory" BasicIO module. Minor changes to documentation otherwise. ------------------------------------------------------------------------ r6919 | guillaume | 2016-11-02 14:37:52 +0000 (Wed, 02 Nov 2016) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Enhancement: check the signal toolbox before compilation. ------------------------------------------------------------------------ r6920 | guillaume | 2016-11-02 14:48:01 +0000 (Wed, 02 Nov 2016) | 2 lines Changed paths: A /trunk/matlabbatch/cfg_basicio/cfg_run_dir_move.m A /trunk/matlabbatch/cfg_basicio/cfg_vout_dir_move.m Enhancement: missing files following r6918. ------------------------------------------------------------------------ r6921 | peter | 2016-11-02 15:30:09 +0000 (Wed, 02 Nov 2016) | 1 line Changed paths: M /trunk/config/spm_run_voi.m Bug fix to the batch for extracting ROIs from multiple sessions simultaneously ------------------------------------------------------------------------ r6922 | karl | 2016-11-02 17:28:23 +0000 (Wed, 02 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_fmri_nmm.m M /trunk/spm_gen_fmri.m A /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m (from /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m:6901) M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_tfm.m Revision of DCM for fMRI with neural masses ------------------------------------------------------------------------ r6923 | guillaume | 2016-11-04 15:35:12 +0000 (Fri, 04 Nov 2016) | 2 lines Changed paths: M /trunk/spm_regions.m Bug fix: return empty fields in xY structure if VOI is empty. ------------------------------------------------------------------------ r6924 | guillaume | 2016-11-09 11:38:00 +0000 (Wed, 09 Nov 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_peb.m M /trunk/config/spm_cfg_eeg_cfc.m M /trunk/config/spm_cfg_eeg_channel_selector.m M /trunk/config/spm_cfg_eeg_firstlevel.m M /trunk/config/spm_cfg_eeg_inv_extract.m M /trunk/config/spm_cfg_eeg_inv_headmodel.m M /trunk/config/spm_cfg_eeg_inv_headmodelhelmet.m M /trunk/config/spm_cfg_eeg_inv_invert.m M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/config/spm_cfg_eeg_inv_simulate.m M /trunk/config/spm_cfg_eeg_prepare.m M /trunk/config/spm_cfg_eeg_reduce.m M /trunk/config/spm_cfg_eeg_regressors.m M /trunk/config/spm_cfg_eeg_tf.m M /trunk/config/spm_cfg_print.m M /trunk/config/spm_rewrite_job.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m Enhancement: use cfg_choice in Longitudinal toolbox instead of cfg_repeat (with backward compatibility using spm_rewrite_job) and add missing help sections. ------------------------------------------------------------------------ r6925 | guillaume | 2016-11-09 17:23:40 +0000 (Wed, 09 Nov 2016) | 2 lines Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_eeg_convert.m M /trunk/config/spm_cfg_eeg_epochs.m M /trunk/config/spm_cfg_eeg_firstlevel.m M /trunk/config/spm_cfg_imcalc.m M /trunk/config/spm_cfg_render.m M /trunk/config/spm_cfg_st.m M /trunk/config/spm_cfg_voi.m Enhancement: replace 'e' strtype in cfg_entry items when possible. ------------------------------------------------------------------------ r6926 | guillaume | 2016-11-09 22:13:19 +0000 (Wed, 09 Nov 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/config/spm_cfg_eeg_artefact.m M /trunk/config/spm_cfg_eeg_average.m M /trunk/config/spm_cfg_eeg_cfc.m M /trunk/config/spm_cfg_eeg_channel_selector.m M /trunk/config/spm_cfg_eeg_convert.m M /trunk/config/spm_cfg_eeg_convert2images.m M /trunk/config/spm_cfg_eeg_epochs.m M /trunk/config/spm_cfg_eeg_firstlevel.m M /trunk/config/spm_cfg_eeg_inv_headmodel.m M /trunk/config/spm_cfg_eeg_inv_headmodelhelmet.m M /trunk/config/spm_cfg_eeg_inv_invert.m M /trunk/config/spm_cfg_eeg_inv_invertiter.m M /trunk/config/spm_cfg_eeg_inv_simulate.m M /trunk/config/spm_cfg_eeg_prepare.m M /trunk/config/spm_cfg_eeg_spatial_confounds.m M /trunk/spm_eeg_artefact_events.m M /trunk/spm_eeg_artefact_eyeblink.m M /trunk/spm_eeg_artefact_flat.m M /trunk/spm_eeg_artefact_heartbeat.m M /trunk/spm_eeg_artefact_jump.m M /trunk/spm_eeg_artefact_nans.m M /trunk/spm_eeg_artefact_peak2peak.m M /trunk/spm_eeg_artefact_saccade.m M /trunk/spm_eeg_artefact_threshchan.m M /trunk/spm_eeg_artefact_zscore.m M /trunk/spm_eeg_artefact_zscorediff.m Enhancement: make sure help field is always present. ------------------------------------------------------------------------ r6927 | guillaume | 2016-11-10 10:39:52 +0000 (Thu, 10 Nov 2016) | 3 lines Changed paths: M /trunk/config/spm_cfg_smooth.m M /trunk/spm_jsonwrite.m Bug fixes: * minimum of one image for the Smooth module. * escape " in JSON exporter (and add support for containers.Map) ------------------------------------------------------------------------ r6928 | john | 2016-11-10 12:26:47 +0000 (Thu, 10 Nov 2016) | 2 lines Changed paths: M /trunk/toolbox/Shoot/tbx_cfg_shoot.m Thanks Guillaume. Not sure how you spotted this one. ------------------------------------------------------------------------ r6929 | guillaume | 2016-11-14 13:07:31 +0000 (Mon, 14 Nov 2016) | 3 lines Changed paths: M /trunk/config/spm_cfg_dcm_bms.m M /trunk/config/spm_cfg_eeg_artefact.m M /trunk/config/spm_cfg_eeg_cfc.m M /trunk/config/spm_cfg_eeg_firstlevel.m M /trunk/config/spm_cfg_eeg_reduce.m M /trunk/config/spm_cfg_eeg_regressors.m M /trunk/config/spm_cfg_eeg_tf.m M /trunk/config/spm_cfg_factorial_design.m M /trunk/config/spm_cfg_fmri_data.m M /trunk/config/spm_cfg_fmri_design.m M /trunk/config/spm_cfg_fmri_spec.m M /trunk/config/spm_cfg_imcalc.m M /trunk/config/spm_cfg_preproc8.m M /trunk/config/spm_cfg_sendmail.m M /trunk/config/spm_cfg_split.m A /trunk/matlabbatch/@cfg_dep/ctranspose.m M /trunk/matlabbatch/cfg_basicio/cfg_run_save_vars.m M /trunk/matlabbatch/cfg_callbuiltin.m Enhancement: Improved compatibility with Octave. Many, many thanks to Stanislaw A. for his help. ------------------------------------------------------------------------ r6930 | volkmar | 2016-11-14 14:35:05 +0000 (Mon, 14 Nov 2016) | 1 line Changed paths: M /trunk/spm_print.m Fix printing of OpenGL-rendered figures in -nodisplay mode. This is a workaround for MATLAB 2013b not setting a valid renderer when OpenGL is not available. ------------------------------------------------------------------------ r6931 | karl | 2016-11-16 12:09:58 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_review.m M /trunk/spm_int_L.m M /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nnm.m M /trunk/toolbox/Neural_Models/spm_lfp_demo.m M /trunk/toolbox/Neural_Models/spm_sigmoid_demo.m M /trunk/toolbox/dcm_meeg/spm_epileptor_demo.m removal of call to eigs.m in spm_int_L (and other minor adjustments to ERP demos) ------------------------------------------------------------------------ r6932 | karl | 2016-11-16 12:11:01 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/ADEM_sample_image.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_DEM.m development update of MDP/DEM demo ------------------------------------------------------------------------ r6933 | vladimir | 2016-11-16 14:02:04 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/spm_eeg_invert_ui.m Remove MEGCOMB from list of modalities for inversion ------------------------------------------------------------------------ r6934 | peter | 2016-11-16 15:41:15 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Updated PEB review GUI to allow thresholding by posterior probability and to use a split hot-cold colormap ------------------------------------------------------------------------ r6935 | peter | 2016-11-16 15:50:14 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Fix to allow the PEB GUI to open PEB or BMA files ------------------------------------------------------------------------ r6936 | peter | 2016-11-16 16:18:44 +0000 (Wed, 16 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Additional GUI improvements to spm_dcm_peb_review ------------------------------------------------------------------------ r6937 | karl | 2016-11-20 12:30:40 +0000 (Sun, 20 Nov 2016) | 1 line Changed paths: M /trunk/spm_bilinear_condition.m M /trunk/spm_kernels.m M /trunk/toolbox/Neural_Models/spm_induced_optimise.m M /trunk/toolbox/Neural_Models/spm_lfp_demo.m M /trunk/toolbox/Neural_Models/spm_seizure_demo.m M /trunk/toolbox/dcm_meeg/spm_epileptor_demo.m Removal of conditioning from spm_kernels (and other minor improvements) ------------------------------------------------------------------------ r6938 | karl | 2016-11-20 12:48:07 +0000 (Sun, 20 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_mdp.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_demo_MDP_fit_fields.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m A /trunk/toolbox/DEM/spm_MDP_L.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Upgrade to MDP schemes and demos – choice fitting and priors on policies added to spm_MDP_VB_X.m ------------------------------------------------------------------------ r6939 | karl | 2016-11-20 13:33:56 +0000 (Sun, 20 Nov 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_fit_fields.m M /trunk/toolbox/DEM/spm_MDP_L.m Minor adjustments to choice fitting demo and DEM/spm_MDP_L.m ------------------------------------------------------------------------ r6940 | peter | 2016-11-20 18:08:06 +0000 (Sun, 20 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_bmr.m A /trunk/tests/test_spm_dcm_bmr.m Bug fix to output of spm_dcm_bmr and introduction of unit test ------------------------------------------------------------------------ r6941 | vladimir | 2016-11-21 09:59:59 +0000 (Mon, 21 Nov 2016) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m minor fix to Peter's code ------------------------------------------------------------------------ r6942 | guillaume | 2016-11-21 13:17:44 +0000 (Mon, 21 Nov 2016) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_util.m M /trunk/spm_check_installation.m M /trunk/spm_defaults.m M /trunk/toolbox/FieldMap/tbx_cfg_fieldmap.m M /trunk/toolbox/MEEGtools/spm_eeg_fix_ctf_headloc.m M /trunk/toolbox/OldSeg/spm_cfg_preproc.m M /trunk/toolbox/Shoot/tbx_cfg_shoot.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_priors.m M /trunk/toolbox/dcm_fnirs/spm_fx_fnirs.m Enhancement: minor adjustments for better compatibility. ------------------------------------------------------------------------ r6943 | john | 2016-11-21 16:28:57 +0000 (Mon, 21 Nov 2016) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexa64 M /trunk/src/shoot_diffeo3d.c * Non-finite values in the deformations risk causing nasty effects. The code now checks for these and ignores them. ------------------------------------------------------------------------ r6944 | vladimir | 2016-11-22 10:16:09 +0000 (Tue, 22 Nov 2016) | 1 line Changed paths: M /trunk/spm_eeg_review_callbacks.m Bug fix (thanks to Rudy) ------------------------------------------------------------------------ r6945 | john | 2016-11-22 10:29:18 +0000 (Tue, 22 Nov 2016) | 3 lines Changed paths: M /trunk/src/shoot_diffeo3d.c Whoops. My last change included a mistake because one of the functions was using (eg) *px, whereas the other two were using px[i]. This should now fix the segmentation faults. ------------------------------------------------------------------------ r6946 | peter | 2016-11-23 15:26:29 +0000 (Wed, 23 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb_bmc.m A /trunk/spm_dcm_peb_bmc_fam.m M /trunk/spm_dcm_peb_fit.m M /trunk/spm_dcm_peb_review.m A /trunk/tests/test_spm_dcm_peb_bmc_fam.m Introduced inference over families of PEB models. Added BMR output to spm_dcm_peb_bmc, which together with BMA, is passed to spm_dcm_peb_bmc_fam. ------------------------------------------------------------------------ r6947 | guillaume | 2016-11-23 16:12:12 +0000 (Wed, 23 Nov 2016) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/tests/test_spm_jsonwrite.m Enhancement: compact/pretty-print option in JSON serialization. ------------------------------------------------------------------------ r6948 | guillaume | 2016-11-24 10:34:01 +0000 (Thu, 24 Nov 2016) | 2 lines Changed paths: M /trunk/spm_changepath.m M /trunk/toolbox/FieldMap/FieldMap.m Enhancement: clean FieldMap and add verbose option to spm_changepath. ------------------------------------------------------------------------ r6949 | spm | 2016-11-24 11:21:36 +0000 (Thu, 24 Nov 2016) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_powcorr_ortho.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/mne2grad.m M /trunk/external/fieldtrip/fileio/private/pos2dim.m M /trunk/external/fieldtrip/fileio/private/pos2dim3d.m M /trunk/external/fieldtrip/fileio/private/pos2transform.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_nervus_header.m M /trunk/external/fieldtrip/fileio/private/read_trigger.m M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/ft_artifact_eog.m M /trunk/external/fieldtrip/ft_artifact_jump.m M /trunk/external/fieldtrip/ft_artifact_muscle.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_networkanalysis.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_box.m M /trunk/external/fieldtrip/plotting/ft_plot_crosshair.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_line.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_montage.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_patch.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m A /trunk/external/fieldtrip/plotting/private/lmoutrn.m A /trunk/external/fieldtrip/plotting/private/pinvNx2.m M /trunk/external/fieldtrip/plotting/private/ptriside.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_denoise.m M /trunk/external/fieldtrip/preproc/ft_preproc_derivative.m M /trunk/external/fieldtrip/preproc/ft_preproc_dftfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_hilbert.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_medianfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_padding.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/preproc/ft_preproc_rereference.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/external/fieldtrip/preproc/ft_preproc_slidingrange.m M /trunk/external/fieldtrip/preproc/ft_preproc_smooth.m M /trunk/external/fieldtrip/preproc/ft_preproc_standardize.m M /trunk/external/fieldtrip/preproc/private/print_once.m A /trunk/external/fieldtrip/private/elec1020_follow.m A /trunk/external/fieldtrip/private/elec1020_fraction.m A /trunk/external/fieldtrip/private/elec1020_intersect.m A /trunk/external/fieldtrip/private/elec1020_locate.m M /trunk/external/fieldtrip/private/getdimord.m A /trunk/external/fieldtrip/private/pntdist.m M /trunk/external/fieldtrip/private/pos2dim.m M /trunk/external/fieldtrip/private/pos2dim3d.m M /trunk/external/fieldtrip/private/pos2transform.m D /trunk/external/fieldtrip/private/prepare_cortexhull.m A /trunk/external/fieldtrip/private/prepare_mesh_cortexhull.m M /trunk/external/fieldtrip/private/prepare_mesh_hexahedral.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m A /trunk/external/fieldtrip/private/prepare_mesh_tetrahedral.m A /trunk/external/fieldtrip/private/ptriside.m A /trunk/external/fieldtrip/private/tritrisect.m M /trunk/external/fieldtrip/private/univariate2bivariate.m A /trunk/external/fieldtrip/specest/ft_specest_neuvar.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesT.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/pos2dim.m M /trunk/external/fieldtrip/utilities/private/pos2transform.m update of external/fieldtrip to 26d7a810d55527a522e05691ce2d10c2fde2d3ce ------------------------------------------------------------------------ r6950 | guillaume | 2016-11-25 12:05:08 +0000 (Fri, 25 Nov 2016) | 4 lines Changed paths: M /trunk/spm_eeg_merge.m M /trunk/spm_list.m Enhancements: * Add test for graphic display in spm_eeg_merge. * Improve CSV export for spm_list - thanks to Tom N. ------------------------------------------------------------------------ r6951 | guillaume | 2016-11-25 12:33:23 +0000 (Fri, 25 Nov 2016) | 2 lines Changed paths: M /trunk/spm_eeg_merge.m Enhancement: better control of display feedback. ------------------------------------------------------------------------ r6952 | guillaume | 2016-11-25 16:03:13 +0000 (Fri, 25 Nov 2016) | 1 line Changed paths: M /trunk/config/spm_cfg.m M /trunk/config/spm_cfg_bms_map.m M /trunk/config/spm_cfg_checkreg.m M /trunk/config/spm_cfg_con.m M /trunk/config/spm_cfg_coreg.m M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_deface.m M /trunk/config/spm_cfg_deformations.m M /trunk/config/spm_cfg_dicom.m M /trunk/config/spm_cfg_disp.m M /trunk/config/spm_cfg_ecat.m M /trunk/config/spm_cfg_exp_frames.m M /trunk/config/spm_cfg_factorial_design.m M /trunk/config/spm_cfg_fmri_data.m M /trunk/config/spm_cfg_fmri_design.m M /trunk/config/spm_cfg_fmri_est.m M /trunk/config/spm_cfg_fmri_spec.m M /trunk/config/spm_cfg_imcalc.m M /trunk/config/spm_cfg_minc.m M /trunk/config/spm_cfg_model_review.m M /trunk/config/spm_cfg_norm.m M /trunk/config/spm_cfg_preproc8.m M /trunk/config/spm_cfg_realign.m M /trunk/config/spm_cfg_realignunwarp.m M /trunk/config/spm_cfg_reorient.m M /trunk/config/spm_cfg_results.m M /trunk/config/spm_cfg_smooth.m M /trunk/config/spm_cfg_st.m M /trunk/config/spm_cfg_tissue_volumes.m Doc: reformat help text to start with one short sentence. ------------------------------------------------------------------------ r6953 | karl | 2016-11-27 13:07:07 +0000 (Sun, 27 Nov 2016) | 1 line Changed paths: M /trunk/spm_nlsi_N.m Decreased rate of convergence(vg) for the first few (8) iterations (to deal with nonlinear mappings from hidden states to response variables) ------------------------------------------------------------------------ r6954 | peter | 2016-11-28 11:57:12 +0000 (Mon, 28 Nov 2016) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m M /trunk/tests/test_spm_dcm_simulate.m Update to spm_dcm_simulate.m to take estimated noise variance from DCM.Ce ------------------------------------------------------------------------ r6955 | guillaume | 2016-11-30 11:40:52 +0000 (Wed, 30 Nov 2016) | 2 lines Changed paths: M /trunk/spm_mesh_normals.m A /trunk/tests/test_spm_mesh_normals.m Enhancement: compute normals explicitly instead of relying on opening a figure. ------------------------------------------------------------------------ r6956 | guillaume | 2016-11-30 13:31:48 +0000 (Wed, 30 Nov 2016) | 2 lines Changed paths: M /trunk/spm_imcalc.m Bug fix: let offset of output image be determined by file format. ------------------------------------------------------------------------ r6957 | karl | 2016-12-01 10:37:00 +0000 (Thu, 01 Dec 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m A /trunk/toolbox/DEM/spm_MDP_plot.m Development work on hybrid MDP DEM models ------------------------------------------------------------------------ r6958 | karl | 2016-12-03 12:30:53 +0000 (Sat, 03 Dec 2016) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_est_V.m M /trunk/spm_reml.m Major revision of spm_reml using Bayesian model reduction to resolve negative definite failures and ill conditioned posteriors ------------------------------------------------------------------------ r6959 | karl | 2016-12-03 12:31:52 +0000 (Sat, 03 Dec 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_MDP_plot.m development work on MDP schemes (labels added for factors and outcomes) ------------------------------------------------------------------------ r6960 | guillaume | 2016-12-05 17:05:09 +0000 (Mon, 05 Dec 2016) | 2 lines Changed paths: M /trunk/toolbox/SRender/spm_sextract.m M /trunk/toolbox/SRender/spm_srender.m M /trunk/toolbox/SRender/tbx_cfg_render.m Enhancement: move addpath call. ------------------------------------------------------------------------ r6961 | guillaume | 2016-12-05 17:36:44 +0000 (Mon, 05 Dec 2016) | 2 lines Changed paths: M /trunk/spm_imcalc.m Enhancement: make descrip field configurable in imcalc. ------------------------------------------------------------------------ r6962 | guillaume | 2016-12-06 12:17:01 +0000 (Tue, 06 Dec 2016) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_file.m Enhancement: allow execution of scripts defined by a URL. ------------------------------------------------------------------------ r6963 | guillaume | 2016-12-07 16:34:44 +0000 (Wed, 07 Dec 2016) | 2 lines Changed paths: M /trunk/spm_graph.m Enhancement: only read raw data when relevant for plotting. Thanks to Christian B. ------------------------------------------------------------------------ r6964 | guillaume | 2016-12-07 16:50:41 +0000 (Wed, 07 Dec 2016) | 2 lines Changed paths: A /trunk/spm_cli.m M /trunk/spm_standalone.m New feature: work in progress on a potential CLI for SPM. ------------------------------------------------------------------------ r6965 | vladimir | 2016-12-08 13:47:06 +0000 (Thu, 08 Dec 2016) | 1 line Changed paths: M /trunk/spm_eeg_inv_checkforward.m M /trunk/spm_eeg_spatial_confounds.m M /trunk/toolbox/MEEGtools/spm_eeg_interpolate_artefact.m M /trunk/toolbox/MEEGtools/spm_eeg_tms_correct.m minor fixes ------------------------------------------------------------------------ r6966 | guillaume | 2016-12-09 10:26:26 +0000 (Fri, 09 Dec 2016) | 2 lines Changed paths: M /trunk/spm_eeg_inv_vb_ecd_gui.m Bug fix: small fix for source restriction in VB-ECD inversion. ------------------------------------------------------------------------ r6967 | karl | 2016-12-09 11:03:28 +0000 (Fri, 09 Dec 2016) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_plot.m Development work on graphics for a demo ------------------------------------------------------------------------ r6968 | guillaume | 2016-12-09 15:58:00 +0000 (Fri, 09 Dec 2016) | 2 lines Changed paths: M /trunk/spm_jobman.m M /trunk/spm_jsonwrite.m M /trunk/spm_mesh_render.m Enhancements: minor adjustments. ------------------------------------------------------------------------ r6969 | guillaume | 2016-12-12 13:08:06 +0000 (Mon, 12 Dec 2016) | 2 lines Changed paths: M /trunk/man/meeg/eeg_imaging.tex M /trunk/spm_eeg_inv_datareg_ui.m Doc: use "MRI" instead of "MNI" in help text for fiducial coordinates. Thanks to Bingjiang L. ------------------------------------------------------------------------ r6970 | guillaume | 2016-12-13 16:03:58 +0000 (Tue, 13 Dec 2016) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m Enhancement: make pretty-print prettier. Thanks to Evelyne B. ------------------------------------------------------------------------ r6971 | bernadette | 2016-12-14 18:49:19 +0000 (Wed, 14 Dec 2016) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m addition of BGC and MMC models ------------------------------------------------------------------------ r6972 | bernadette | 2016-12-14 18:51:29 +0000 (Wed, 14 Dec 2016) | 1 line Changed paths: A /trunk/toolbox/dcm_meeg/spm_bgc_priors.m A /trunk/toolbox/dcm_meeg/spm_fx_bgc.m A /trunk/toolbox/dcm_meeg/spm_fx_mmc.m A /trunk/toolbox/dcm_meeg/spm_mmc_priors.m addition of BGC and MMC models for generic DCM ------------------------------------------------------------------------ r6973 | bernadette | 2016-12-15 12:34:20 +0000 (Thu, 15 Dec 2016) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m addition MMC and BGC models ------------------------------------------------------------------------ r6974 | guillaume | 2016-12-15 17:57:34 +0000 (Thu, 15 Dec 2016) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/src/spm_jsonread.c Bug fix: better handling of character arrays and escaped characters. ------------------------------------------------------------------------ r6975 | karl | 2016-12-18 20:27:00 +0000 (Sun, 18 Dec 2016) | 2 lines Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/DEM_demo_MDP_maze.m M /trunk/toolbox/DEM/DEM_spatial_deconvolution.m M /trunk/toolbox/DEM/MDP_search_graphics.mat M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_MDP_plot.m Upgrade to DEM GUI (papers updated) Mixed (MDP and DEM) model demo completed ------------------------------------------------------------------------ r6976 | vladimir | 2016-12-22 11:04:45 +0000 (Thu, 22 Dec 2016) | 1 line Changed paths: M /trunk/@meeg/rmdata.m M /trunk/spm_dcm_simulate.m M /trunk/spm_eeg_inv_forward.m M /trunk/toolbox/dcm_meeg/spm_erp_L.m Add noise to modes rather than channels in simulated ERP + other minor fixes ------------------------------------------------------------------------ r6977 | karl | 2016-12-24 17:48:44 +0000 (Sat, 24 Dec 2016) | 1 line Changed paths: M /trunk/spm_wft.m A /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/DEM_birdsong.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_MDP_plot.m Addition of Maze demo to DEM toolbox ------------------------------------------------------------------------ r6978 | karl | 2017-01-03 10:42:09 +0000 (Tue, 03 Jan 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Completion of maze planning demo in DEM Toolbox ------------------------------------------------------------------------ r6979 | guillaume | 2017-01-03 12:07:52 +0000 (Tue, 03 Jan 2017) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c M /trunk/tests/test_spm_jsonread.m Enhancement: null in numeric arrays is converted into NaN, following change in jsondecode. ------------------------------------------------------------------------ r6980 | guillaume | 2017-01-04 10:10:29 +0000 (Wed, 04 Jan 2017) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/LICENCE.txt M /trunk/README.txt M /trunk/help/index.html M /trunk/spm_Menu.fig Doc: mention 2017. ------------------------------------------------------------------------ r6981 | guillaume | 2017-01-04 13:22:16 +0000 (Wed, 04 Jan 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: adding preliminary support for fieldmap and behavioral experiment data in BIDS parser. ------------------------------------------------------------------------ r6982 | vladimir | 2017-01-04 13:33:16 +0000 (Wed, 04 Jan 2017) | 1 line Changed paths: M /trunk/man/meeg/eeg_preprocessing.tex Minor manual fix (thanks to Misun) ------------------------------------------------------------------------ r6983 | vladimir | 2017-01-06 17:25:22 +0000 (Fri, 06 Jan 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_montage.m minor fix ------------------------------------------------------------------------ r6984 | guillaume | 2017-01-09 13:29:55 +0000 (Mon, 09 Jan 2017) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/tests/test_spm_jsonwrite.m Bug fix: infinite recursion with empty strings. Thanks to Evelyne B. ------------------------------------------------------------------------ r6985 | guillaume | 2017-01-11 11:51:49 +0000 (Wed, 11 Jan 2017) | 2 lines Changed paths: M /trunk/spm_graph.m M /trunk/spm_graph_ui.m Enhancement: allow to specify an F-contrast on the fly for 'Contrast estimates and 90% C.I.' plots. ------------------------------------------------------------------------ r6986 | guillaume | 2017-01-13 13:19:46 +0000 (Fri, 13 Jan 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Bug fix: better handling of files task-*.json at the root level in BIDS. ------------------------------------------------------------------------ r6987 | volkmar | 2017-01-13 16:07:00 +0000 (Fri, 13 Jan 2017) | 1 line Changed paths: M /trunk/spm_mesh_project.m Force row-vector for dimensions in any input case. ------------------------------------------------------------------------ r6988 | guillaume | 2017-01-16 12:38:29 +0000 (Mon, 16 Jan 2017) | 20 lines Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/@file_array/private/file2mat.m Bug fix: fix overflow when using linear indexing (part 1). dat = file_array; dat.fname = 'largefile.nii'; dat.dim = [228 228 96 576]; dat.offset = ceil(348/8)*8; N = nifti; N.dat = dat; create(N,true); for i=1:dat.dim(4) dat(:,:,:,i) = i/2; end V = spm_vol(dat.fname); for i=1:dat.dim(4), a(i) = spm_data_read(V(i),prod(dat.dim(1:3))); end for i=1:dat.dim(4), b(i) = spm_data_read(V(i),'xyz',dat.dim(1:3)'); end figure,plot(a);hold on;plot(b,'r') ------------------------------------------------------------------------ r6989 | guillaume | 2017-01-16 13:01:47 +0000 (Mon, 16 Jan 2017) | 3 lines Changed paths: M /trunk/@file_array/private/file2mat.mexa64 M /trunk/@file_array/private/file2mat.mexmaci64 M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/subsref.m Bug fix: fix overflow when using linear indexing (part 2). A similar change should be made in @file_array/private/mat2file.c ------------------------------------------------------------------------ r6990 | spm | 2017-01-17 11:56:30 +0000 (Tue, 17 Jan 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/getdimord.m A /trunk/external/fieldtrip/fileio/private/homer2opto.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirshdr.m M /trunk/external/fieldtrip/ft_channelrepair.m D /trunk/external/fieldtrip/ft_channelselection.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_definetrial.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/preproc/ft_preproc_dftfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/external/fieldtrip/private/ft_getuserfun.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/univariate2bivariate.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_datatype_freq.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/private/getdimord.m update of external/fieldtrip to c555ff4 ------------------------------------------------------------------------ r6991 | guillaume | 2017-01-19 13:09:51 +0000 (Thu, 19 Jan 2017) | 4 lines Changed paths: M /trunk/@file_array/subsref.m M /trunk/spm_orthviews/spm_ov_roi.m M /trunk/spm_orthviews.m Enhancement: spm_orthviews' contextual menu is only updated when about to be displayed. Local/global renames this image/all images. Fix @file_array/subsref.m where an unnecessary change was made in r6989. ------------------------------------------------------------------------ r6992 | vladimir | 2017-01-19 15:27:17 +0000 (Thu, 19 Jan 2017) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m Added temporal projector ------------------------------------------------------------------------ r6993 | guillaume | 2017-01-24 15:22:34 +0000 (Tue, 24 Jan 2017) | 2 lines Changed paths: A /trunk/bin A /trunk/bin/spm12-matlab A /trunk/bin/spm12-octave M /trunk/spm_Welcome.m M /trunk/spm_standalone.m Enhancement: further work on command line interface. ------------------------------------------------------------------------ r6994 | guillaume | 2017-01-26 16:19:14 +0000 (Thu, 26 Jan 2017) | 1 line Changed paths: M /trunk/toolbox/FieldMap/FieldMap.m Enhancement: don't display GUI in batch mode. ------------------------------------------------------------------------ r6995 | guillaume | 2017-01-27 15:57:40 +0000 (Fri, 27 Jan 2017) | 2 lines Changed paths: M /trunk/@nifti/private/read_hdr_raw.m Enhancement: read first NIfTI header extension if present. ------------------------------------------------------------------------ r6996 | guillaume | 2017-01-30 11:22:15 +0000 (Mon, 30 Jan 2017) | 2 lines Changed paths: M /trunk/bin/spm12-matlab M /trunk/bin/spm12-octave M /trunk/spm_standalone.m Enhancement: minor adjustments to standalone execution. ------------------------------------------------------------------------ r6997 | spm | 2017-01-30 11:49:15 +0000 (Mon, 30 Jan 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/fixname.m A /trunk/external/fieldtrip/external/stats/README.orig M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/volumewrite_spm.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/private/fixname.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumedownsample.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/private/fixname.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/private/fixname.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/private/fixname.m M /trunk/external/fieldtrip/private/atlas_lookup.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/findcluster.m M /trunk/external/fieldtrip/private/fixdimord.m M /trunk/external/fieldtrip/private/fixname.m M /trunk/external/fieldtrip/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/mni2tal.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m M /trunk/external/fieldtrip/private/tal2mni.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/triangulate_seg.m M /trunk/external/fieldtrip/private/volumefillholes.m M /trunk/external/fieldtrip/private/volumesmooth.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/specest/private/fixname.m M /trunk/external/fieldtrip/spm2fieldtrip.m M /trunk/external/fieldtrip/statfun/private/fixname.m M /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m A /trunk/external/fieldtrip/utilities/ft_test.m D /trunk/external/fieldtrip/utilities/ft_test_result.m D /trunk/external/fieldtrip/utilities/ft_test_run.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m M /trunk/external/fieldtrip/utilities/private/fixname.m M /trunk/external/fieldtrip/utilities/private/ft_platform_supports.m A /trunk/external/fieldtrip/utilities/private/ft_test_compare.m A /trunk/external/fieldtrip/utilities/private/ft_test_report.m A /trunk/external/fieldtrip/utilities/private/ft_test_run.m M /trunk/external/fieldtrip/utilities/private/individual2sn.m A /trunk/external/fieldtrip/utilities/private/mergecellstruct.m M /trunk/external/fieldtrip/utilities/private/sn2individual.m A /trunk/external/fieldtrip/utilities/private/struct2table.m M /trunk/external/fieldtrip/utilities/private/volumefillholes.m M /trunk/external/fieldtrip/utilities/private/volumesmooth.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m M /trunk/external/fieldtrip/utilities/renamefields.m update of external/fieldtrip to 37b3b05 ------------------------------------------------------------------------ r6998 | vladimir | 2017-01-31 16:48:27 +0000 (Tue, 31 Jan 2017) | 1 line Changed paths: M /trunk/@meeg/indtrial.m Bug fix, conditions were unintentionally sorted with 'GOOD' or 'BAD' flag. Thanks to Javier. ------------------------------------------------------------------------ r6999 | john | 2017-02-01 17:18:47 +0000 (Wed, 01 Feb 2017) | 4 lines Changed paths: M /trunk/spm_realign.m M /trunk/src/shoot_optimN.c * Removed some commented out code, and changed the tolerance in a cholesky decomposition in spm_optimN.c * Defined the smoothing kernel differently so that smaller FWHM values are handled more gracefully (ie. not crash when FWHM=0). ------------------------------------------------------------------------ r7000 | vladimir | 2017-02-02 10:09:19 +0000 (Thu, 02 Feb 2017) | 1 line Changed paths: M /trunk/@meeg/montage.m Fix for a problem with applying virtual montage that only uses a subset of channels. ------------------------------------------------------------------------ r7001 | guillaume | 2017-02-02 13:53:16 +0000 (Thu, 02 Feb 2017) | 2 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/obj_read.m Enhancement: partial import of Wavefront OBJ files. ------------------------------------------------------------------------ r7002 | karl | 2017-02-02 18:22:04 +0000 (Thu, 02 Feb 2017) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_csd.m M /trunk/toolbox/dcm_meeg/spm_fs_csd.m Simplification of noise precision for DCM for CSD – and addition of autoregressive coefficients to data features ------------------------------------------------------------------------ r7003 | karl | 2017-02-02 18:22:56 +0000 (Thu, 02 Feb 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m A /trunk/toolbox/DEM/FEP_fluctuations.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m Addition of fluctuation demo to DEM Toolbox (and minor upgrade to maze demo) ------------------------------------------------------------------------ r7004 | guillaume | 2017-02-03 10:57:17 +0000 (Fri, 03 Feb 2017) | 2 lines Changed paths: M /trunk/@gifti/private/obj_read.m M /trunk/@gifti/saveas.m M /trunk/spm_mesh_render.m Enhancement: Better integration of OBJ files and option to specify viewpoint. ------------------------------------------------------------------------ r7005 | guillaume | 2017-02-03 17:32:23 +0000 (Fri, 03 Feb 2017) | 2 lines Changed paths: M /trunk/bin/spm12-matlab M /trunk/spm_check_installation.m Enhancement: compatibility with older versions of bash. ------------------------------------------------------------------------ r7006 | vladimir | 2017-02-06 11:09:06 +0000 (Mon, 06 Feb 2017) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_cont_power.m Minor fix (thanks to Rik) ------------------------------------------------------------------------ r7007 | guillaume | 2017-02-07 10:15:24 +0000 (Tue, 07 Feb 2017) | 2 lines Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_peb.m Enhancement: Use flag from defaults when saving MAT-files. ------------------------------------------------------------------------ r7008 | guillaume | 2017-02-07 11:02:58 +0000 (Tue, 07 Feb 2017) | 2 lines Changed paths: M /trunk/bin/spm12-matlab A /trunk/bin/spm12-mcr M /trunk/spm_standalone.m Enhancement: Compatibility with Mac platform and MCR. ------------------------------------------------------------------------ r7009 | vladimir | 2017-02-07 18:14:16 +0000 (Tue, 07 Feb 2017) | 1 line Changed paths: M /trunk/spm_eeg_inv_extract.m Reinstating temporal projectors as discussed with Karl ------------------------------------------------------------------------ r7010 | vladimir | 2017-02-07 18:15:30 +0000 (Tue, 07 Feb 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/spm_eeg_inv_checkdatareg.m M /trunk/spm_eeg_inv_checkforward.m Trying to fix problems with plotting sensors ------------------------------------------------------------------------ r7012 | guillaume | 2017-02-08 16:54:29 +0000 (Wed, 08 Feb 2017) | 2 lines Changed paths: M /trunk/config/spm_cfg_imcalc.m Doc: clarify the help text for the 'expression' item in ImCalc. ------------------------------------------------------------------------ r7013 | guillaume | 2017-02-09 18:41:14 +0000 (Thu, 09 Feb 2017) | 2 lines Changed paths: M /trunk/spm_mesh_render.m M /trunk/spm_print.m Bug fix: deployprint is deprecated and should not be used to print to a file. ------------------------------------------------------------------------ r7014 | guillaume | 2017-02-13 12:31:33 +0000 (Mon, 13 Feb 2017) | 4 lines Changed paths: M /trunk/bin/spm12-matlab M /trunk/bin/spm12-mcr M /trunk/spm_BIDS.m M /trunk/spm_jsonwrite.m M /trunk/src/spm_jsonread.c M /trunk/tests/test_spm_jsonread.m Enhancements: * improved JSON compabitility with jsondecode and JSONlab. * minor changes otherwise. ------------------------------------------------------------------------ r7015 | guillaume | 2017-02-13 13:27:00 +0000 (Mon, 13 Feb 2017) | 2 lines Changed paths: M /trunk/spm_diffeo.mexa64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_diffeo.mexw32 M /trunk/spm_diffeo.mexw64 M /trunk/spm_field.mexa64 M /trunk/spm_field.mexmaci64 M /trunk/spm_field.mexw32 M /trunk/spm_field.mexw64 M /trunk/spm_jsonread.mexa64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_jsonread.mexw32 M /trunk/spm_jsonread.mexw64 M /trunk/spm_mesh_utils.mexa64 M /trunk/spm_mesh_utils.mexmaci64 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mesh_utils.mexw64 New compilation of recently modified MEX files. ------------------------------------------------------------------------ r7016 | peter | 2017-02-13 14:53:00 +0000 (Mon, 13 Feb 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m Minor update to DCM estimation batch ------------------------------------------------------------------------ r7017 | karl | 2017-02-15 12:50:58 +0000 (Wed, 15 Feb 2017) | 1 line Changed paths: M /trunk/spm_dx.m M /trunk/spm_eeg_invert.m M /trunk/spm_eeg_invert_prepro.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m minor embellishments ------------------------------------------------------------------------ r7018 | guillaume | 2017-02-15 13:36:48 +0000 (Wed, 15 Feb 2017) | 2 lines Changed paths: M /trunk/spm_Ce.m M /trunk/spm_fmri_concatenate.m M /trunk/spm_fmri_spm_ui.m M /trunk/spm_print.m A /trunk/tests/test_spm_Ce.m Refactoring: move covariance components specification from spm_fmri_spm_ui.m to spm_Ce.m ------------------------------------------------------------------------ r7019 | guillaume | 2017-02-16 10:49:48 +0000 (Thu, 16 Feb 2017) | 2 lines Changed paths: M /trunk/config/spm_make_manual.m M /trunk/man/Makefile M /trunk/man/multi/figures/figure7.png M /trunk/spm_standalone.m Enhancement: automatic compilation of PDF manual. ------------------------------------------------------------------------ r7020 | karl | 2017-02-16 13:15:35 +0000 (Thu, 16 Feb 2017) | 1 line Changed paths: A /trunk/toolbox/DEM/FEP_MB_demo.m Development work for physics of life demo ------------------------------------------------------------------------ r7021 | peter | 2017-02-16 15:09:17 +0000 (Thu, 16 Feb 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m Updated DCM estimation batch to save cell arrays of filenames rather than structures, to save space. And added check for nested models. ------------------------------------------------------------------------ r7022 | karl | 2017-02-20 10:46:37 +0000 (Mon, 20 Feb 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_fluctuations.m M /trunk/toolbox/DEM/spm_Manifold_solve.m Development of fluctuation demo ------------------------------------------------------------------------ r7023 | vladimir | 2017-02-21 11:34:52 +0000 (Tue, 21 Feb 2017) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m fix to use noise estimate from the fully inverted model ------------------------------------------------------------------------ r7024 | guillaume | 2017-02-21 17:53:55 +0000 (Tue, 21 Feb 2017) | 4 lines Changed paths: M /trunk/matlabbatch/cfg_load_jobs.m Enhancements: * Loading compiled batches in deployed mode. * Improving compatibility between spm_jsonwrite and jsonencode. ------------------------------------------------------------------------ r7025 | guillaume | 2017-02-22 10:03:58 +0000 (Wed, 22 Feb 2017) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_jsonwrite.m Enhancements: further changes related to r7024. ------------------------------------------------------------------------ r7026 | bernadette | 2017-02-23 14:56:26 +0000 (Thu, 23 Feb 2017) | 1 line Changed paths: M /trunk/spm_dcm_delay.m switch added to specify type of nodelay for selfconnections ------------------------------------------------------------------------ r7027 | bernadette | 2017-02-23 15:13:26 +0000 (Thu, 23 Feb 2017) | 1 line Changed paths: A /trunk/man/example_scripts/DCM_example_MMC_BGC.m example script for generic DCM (MMC-BGC example) ------------------------------------------------------------------------ r7028 | guillaume | 2017-02-24 10:44:25 +0000 (Fri, 24 Feb 2017) | 2 lines Changed paths: M /trunk/config/spm_run_con.m M /trunk/spm_contrasts.m Enhancement: faster contrast estimation from the batch interface. ------------------------------------------------------------------------ r7029 | guillaume | 2017-02-24 15:39:07 +0000 (Fri, 24 Feb 2017) | 4 lines Changed paths: M /trunk/config/spm_run_fmri_est.m M /trunk/spm_contrasts.m Enhancements: * Faster contrast estimation when called from spm_run_fmri_est.m, following r7028. * Hyperlink on statistical maps for direct inference. ------------------------------------------------------------------------ r7030 | spm | 2017-02-24 16:23:46 +0000 (Fri, 24 Feb 2017) | 1 line Changed paths: A /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m A /trunk/external/fieldtrip/fileio/ft_write_sens.m M /trunk/external/fieldtrip/fileio/private/bounding_mesh.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/loadvar.m A /trunk/external/fieldtrip/fileio/private/read_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/read_nex_event.m M /trunk/external/fieldtrip/fileio/private/solid_angle.m A /trunk/external/fieldtrip/fileio/private/write_bioimage_mgrid.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/private/bounding_mesh.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m A /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/icosahedron.m M /trunk/external/fieldtrip/forward/private/icosahedron162.m M /trunk/external/fieldtrip/forward/private/icosahedron42.m M /trunk/external/fieldtrip/forward/private/icosahedron642.m A /trunk/external/fieldtrip/forward/private/plgndr.c M /trunk/external/fieldtrip/forward/private/solid_angle.m M /trunk/external/fieldtrip/ft_channelrepair.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_interpolatenan.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumereslice.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/private/bounding_mesh.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m A /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m M /trunk/external/fieldtrip/inverse/private/solid_angle.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_select_channel.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_volume.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/private/icosahedron.m M /trunk/external/fieldtrip/plotting/private/icosahedron162.m M /trunk/external/fieldtrip/plotting/private/icosahedron42.m M /trunk/external/fieldtrip/plotting/private/icosahedron642.m M /trunk/external/fieldtrip/plotting/private/refine.m A /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/bounding_mesh.m M /trunk/external/fieldtrip/private/bsscca.m A /trunk/external/fieldtrip/private/fixcoordsys.m D /trunk/external/fieldtrip/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/icosahedron.m M /trunk/external/fieldtrip/private/icosahedron162.m M /trunk/external/fieldtrip/private/icosahedron42.m M /trunk/external/fieldtrip/private/icosahedron642.m M /trunk/external/fieldtrip/private/loadvar.m A /trunk/external/fieldtrip/private/moveinward.m A /trunk/external/fieldtrip/private/plgndr.c M /trunk/external/fieldtrip/private/prepare_freq_matrices.m M /trunk/external/fieldtrip/private/refine.m M /trunk/external/fieldtrip/private/solid_angle.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/volumeflip.m M /trunk/external/fieldtrip/private/volumepermute.m A /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/src/det2x2.c M /trunk/external/fieldtrip/src/ft_spike_sub_crossx.c M /trunk/external/fieldtrip/src/inv2x2.c M /trunk/external/fieldtrip/src/lmoutr.c M /trunk/external/fieldtrip/src/ltrisect.c M /trunk/external/fieldtrip/src/meg_leadfield1.c M /trunk/external/fieldtrip/src/mtimes2x2.c M /trunk/external/fieldtrip/src/nanmean.c D /trunk/external/fieldtrip/src/nannumel.c M /trunk/external/fieldtrip/src/nanstd.c M /trunk/external/fieldtrip/src/nansum.c M /trunk/external/fieldtrip/src/nanvar.c M /trunk/external/fieldtrip/src/plgndr.c M /trunk/external/fieldtrip/src/plinproj.c M /trunk/external/fieldtrip/src/ptriproj.c M /trunk/external/fieldtrip/src/read_16bit.c M /trunk/external/fieldtrip/src/read_24bit.c M /trunk/external/fieldtrip/src/read_ctf_shm.c M /trunk/external/fieldtrip/src/rename.c M /trunk/external/fieldtrip/src/rfbevent.c M /trunk/external/fieldtrip/src/routlm.c M /trunk/external/fieldtrip/src/sandwich2x2.c M /trunk/external/fieldtrip/src/solid_angle.c M /trunk/external/fieldtrip/src/solid_angle.m M /trunk/external/fieldtrip/src/splint_gh.c M /trunk/external/fieldtrip/src/write_ctf_shm.c M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_compile_mex.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_datatype_volume.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m A /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/ft_test.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/base64encode.m M /trunk/external/fieldtrip/utilities/private/fixsegmentation.m D /trunk/external/fieldtrip/utilities/private/ft_platform_supports.m A /trunk/external/fieldtrip/utilities/private/ft_test_moxunit_run.m M /trunk/external/fieldtrip/utilities/private/ft_test_run.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/icosahedron.m M /trunk/external/fieldtrip/utilities/private/icosahedron42.m M /trunk/external/fieldtrip/utilities/private/loadvar.m M /trunk/external/fieldtrip/utilities/private/refine.m M /trunk/external/fieldtrip/utilities/private/volumeflip.m M /trunk/external/fieldtrip/utilities/private/volumepermute.m update of external/fieldtrip to 5618dbb ------------------------------------------------------------------------ r7031 | karl | 2017-02-27 19:46:48 +0000 (Mon, 27 Feb 2017) | 1 line Changed paths: M /trunk/spm_fieldindices.m upgrade to spm_fieldindices to handle structure arrays ------------------------------------------------------------------------ r7032 | karl | 2017-02-27 19:47:34 +0000 (Mon, 27 Feb 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_MB_demo.m Markov Blanket demo development ------------------------------------------------------------------------ r7033 | karl | 2017-03-05 11:19:18 +0000 (Sun, 05 Mar 2017) | 1 line Changed paths: M /trunk/spm_ancova.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/FEP_MB_demo.m M /trunk/toolbox/DEM/FEP_fluctuations.m M /trunk/toolbox/DEM/spm_Manifold_solve.m FEP development work (Markov Blanket demo added) ------------------------------------------------------------------------ r7034 | guillaume | 2017-03-09 17:26:10 +0000 (Thu, 09 Mar 2017) | 2 lines Changed paths: M /trunk/config/spm_run_voi.m Enhancement: add option to specify the output directory for the Volume of Interest module. A request from Phillipp L. ------------------------------------------------------------------------ r7035 | guillaume | 2017-03-14 12:21:54 +0000 (Tue, 14 Mar 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m M /trunk/spm_jsonwrite.m M /trunk/spm_standalone.m M /trunk/tests/test_spm_jsonwrite.m Enhancement: update to BIDS v1.0.1. ------------------------------------------------------------------------ r7036 | guillaume | 2017-03-15 11:19:11 +0000 (Wed, 15 Mar 2017) | 2 lines Changed paths: M /trunk/@gifti/gifti.m New feature: new constructor to store cdata as N Mx1 instead of 1 MxN. ------------------------------------------------------------------------ r7037 | guillaume | 2017-03-15 11:45:13 +0000 (Wed, 15 Mar 2017) | 2 lines Changed paths: M /trunk/@gifti/gifti.m Enhancement: more direct, faster implementation of part of r7036. ------------------------------------------------------------------------ r7038 | guillaume | 2017-03-15 12:43:51 +0000 (Wed, 15 Mar 2017) | 2 lines Changed paths: M /trunk/@file_array/private/mat2file.c Bug fix: support for multibyte encoded characters. ------------------------------------------------------------------------ r7039 | guillaume | 2017-03-15 12:58:13 +0000 (Wed, 15 Mar 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Bug fix: Behavioral experiment data in BIDS. ------------------------------------------------------------------------ r7040 | peter | 2017-03-15 15:26:45 +0000 (Wed, 15 Mar 2017) | 1 line Changed paths: M /trunk/spm_find_pC.m Added a warning to spm_find_pC.m, advising that when no matching fields are found, all fields are returned ------------------------------------------------------------------------ r7041 | guillaume | 2017-03-15 16:15:19 +0000 (Wed, 15 Mar 2017) | 2 lines Changed paths: M /trunk/spm_preproc_write8.m Bug fix: handle bounding box and voxel size default values. ------------------------------------------------------------------------ r7042 | peter | 2017-03-16 10:35:41 +0000 (Thu, 16 Mar 2017) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Fixed bug in spm_dcm_fmri_check.m where explained variance wasn't shown if a GCM of filenames was given ------------------------------------------------------------------------ r7043 | guillaume | 2017-03-16 11:19:44 +0000 (Thu, 16 Mar 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: further work on the BIDS-MEG specs. ------------------------------------------------------------------------ r7044 | guillaume | 2017-03-16 13:00:09 +0000 (Thu, 16 Mar 2017) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/spm_load.m Enhancement: hex replacementStyle option for JSON and TSV. ------------------------------------------------------------------------ r7045 | guillaume | 2017-03-17 10:41:12 +0000 (Fri, 17 Mar 2017) | 2 lines Changed paths: M /trunk/spm_jsonread.m M /trunk/src/spm_jsonread.c Enhancement: adding ReplacementStyle option for structures' fields. ------------------------------------------------------------------------ r7046 | guillaume | 2017-03-17 12:41:52 +0000 (Fri, 17 Mar 2017) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexmaci64 M /trunk/@file_array/private/init.mexmaci64 M /trunk/@file_array/private/mat2file.mexmaci64 M /trunk/@gifti/private/zstream.mexmaci64 M /trunk/@xmltree/private/xml_findstr.mexmaci64 M /trunk/external/bemcp/bem_Cii_cog.mexmaci64 M /trunk/external/bemcp/bem_Cii_cst.mexmaci64 M /trunk/external/bemcp/bem_Cii_lin.mexmaci64 M /trunk/external/bemcp/bem_Cij_cog.mexmaci64 M /trunk/external/bemcp/bem_Cij_cst.mexmaci64 M /trunk/external/bemcp/bem_Cij_lin.mexmaci64 M /trunk/external/bemcp/bem_Gi_cog.mexmaci64 M /trunk/external/bemcp/bem_Gi_vert.mexmaci64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/external/stats/nanmean.mexmaci64 M /trunk/external/fieldtrip/external/stats/nanstd.mexmaci64 M /trunk/external/fieldtrip/external/stats/nansum.mexmaci64 M /trunk/external/fieldtrip/external/stats/nanvar.mexmaci64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexmaci64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexmaci64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexmaci64 M /trunk/external/fieldtrip/forward/private/plgndr.mexmaci64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexmaci64 M /trunk/external/fieldtrip/forward/private/routlm.mexmaci64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/private/plgndr.mexmaci64 M /trunk/external/fieldtrip/private/ptriproj.mexmaci64 M /trunk/external/fieldtrip/private/routlm.mexmaci64 M /trunk/external/fieldtrip/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexmaci64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexmaci64 M /trunk/spm_add.mexmaci64 M /trunk/spm_bsplinc.mexmaci64 M /trunk/spm_bsplins.mexmaci64 M /trunk/spm_bwlabel.mexmaci64 M /trunk/spm_cat.mexmaci64 M /trunk/spm_conv_vol.mexmaci64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_dilate_erode.mexmaci64 M /trunk/spm_existfile.mexmaci64 M /trunk/spm_field.mexmaci64 M /trunk/spm_gamrnd.mexmaci64 M /trunk/spm_get_lm.mexmaci64 M /trunk/spm_global.mexmaci64 M /trunk/spm_hist.mexmaci64 M /trunk/spm_hist2.mexmaci64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_krutil.mexmaci64 M /trunk/spm_mesh_utils.mexmaci64 M /trunk/spm_mrf.mexmaci64 M /trunk/spm_project.mexmaci64 M /trunk/spm_render_vol.mexmaci64 M /trunk/spm_resels_vol.mexmaci64 M /trunk/spm_sample_vol.mexmaci64 M /trunk/spm_slice_vol.mexmaci64 M /trunk/spm_unlink.mexmaci64 M /trunk/spm_voronoi.mexmaci64 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexmaci64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexmaci64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexmaci64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexmaci64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexmaci64 M /trunk/toolbox/FieldMap/pm_pad.mexmaci64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexmaci64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexmaci64 New compilation of 64bit Mac MEX files on OS X 10.9.5 with MATLAB R2017a and Clang 6.0. ------------------------------------------------------------------------ r7047 | peter | 2017-03-21 14:56:40 +0000 (Tue, 21 Mar 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m Fixed typo in the setting of alpha in spm_dcm_peb.m ------------------------------------------------------------------------ r7048 | spm | 2017-03-24 11:01:34 +0000 (Fri, 24 Mar 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/README A /trunk/external/fieldtrip/bis2fieldtrip.m M /trunk/external/fieldtrip/connectivity/private/fixname.m A /trunk/external/fieldtrip/fieldtrip2bis.m M /trunk/external/fieldtrip/fieldtrip2ctf.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_write_sens.m M /trunk/external/fieldtrip/fileio/private/bti2grad.m M /trunk/external/fieldtrip/fileio/private/ctf2grad.m M /trunk/external/fieldtrip/fileio/private/fixname.m A /trunk/external/fieldtrip/fileio/private/fixoldorg.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/read_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/undobalancing.m M /trunk/external/fieldtrip/fileio/private/write_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/write_edf.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/private/fixname.m A /trunk/external/fieldtrip/forward/private/fixoldorg.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/plgndr.m M /trunk/external/fieldtrip/forward/private/undobalancing.m A /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_denoise_synthetic.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_networkanalysis.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_rejectcomponent.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_topoplotTFR.m M /trunk/external/fieldtrip/inverse/private/fixname.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_box.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_line.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_montage.m M /trunk/external/fieldtrip/plotting/ft_plot_patch.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_topo3d.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/plotting/ft_select_box.m M /trunk/external/fieldtrip/plotting/ft_select_channel.m M /trunk/external/fieldtrip/plotting/ft_select_point.m M /trunk/external/fieldtrip/plotting/ft_select_point3d.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/plotting/ft_select_voxel.m M /trunk/external/fieldtrip/plotting/private/black.m M /trunk/external/fieldtrip/plotting/private/blue.m M /trunk/external/fieldtrip/plotting/private/brain.m M /trunk/external/fieldtrip/plotting/private/cortex.m A /trunk/external/fieldtrip/plotting/private/cortex_dark.m A /trunk/external/fieldtrip/plotting/private/cortex_light.m M /trunk/external/fieldtrip/plotting/private/fixname.m A /trunk/external/fieldtrip/plotting/private/fixoldorg.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/green.m M /trunk/external/fieldtrip/plotting/private/red.m M /trunk/external/fieldtrip/plotting/private/undobalancing.m M /trunk/external/fieldtrip/plotting/private/white.m M /trunk/external/fieldtrip/plotting/private/yellow.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_medianfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_rereference.m M /trunk/external/fieldtrip/preproc/private/fixname.m M /trunk/external/fieldtrip/private/bandpassfilter.m M /trunk/external/fieldtrip/private/bandstopfilter.m M /trunk/external/fieldtrip/private/ctf2grad.m M /trunk/external/fieldtrip/private/fixname.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/highpassfilter.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/lowpassfilter.m M /trunk/external/fieldtrip/private/megplanar_fitplane.m M /trunk/external/fieldtrip/private/megplanar_orig.m M /trunk/external/fieldtrip/private/mergeconfig.m M /trunk/external/fieldtrip/private/plgndr.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/undobalancing.m M /trunk/external/fieldtrip/specest/private/fixname.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/src/geometry.c M /trunk/external/fieldtrip/src/nanaccum.h M /trunk/external/fieldtrip/src/platform.h M /trunk/external/fieldtrip/src/plgndr.m M /trunk/external/fieldtrip/src/read_16bit.c M /trunk/external/fieldtrip/src/read_24bit.c M /trunk/external/fieldtrip/src/read_ctf_shm.c M /trunk/external/fieldtrip/src/write_ctf_shm.c M /trunk/external/fieldtrip/statfun/private/fixname.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_convert_coordsys.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_postamble.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m M /trunk/external/fieldtrip/utilities/private/fixname.m A /trunk/external/fieldtrip/utilities/private/fixoldorg.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m M /trunk/external/fieldtrip/utilities/private/undobalancing.m update of external/fieldtrip to 97a6e50 ------------------------------------------------------------------------ r7049 | peter | 2017-03-29 11:01:27 +0100 (Wed, 29 Mar 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb_fit.m Minor fix to spm_dcm_peb_fit.m to enable multiple covariance components ------------------------------------------------------------------------ r7050 | peter | 2017-03-29 16:44:54 +0100 (Wed, 29 Mar 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m A /trunk/tests/test_spm_dcm_peb.m Changes to spm_dcm_peb: fixed SVD issue for fields and all precision definitions, added manual precision component option, added option to suppress conditional dependencies, added unit tests. ------------------------------------------------------------------------ r7051 | karl | 2017-04-02 12:35:35 +0100 (Sun, 02 Apr 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/FEP_MB_demo.m development work on Markov Blanket demo ------------------------------------------------------------------------ r7052 | karl | 2017-04-02 22:28:52 +0100 (Sun, 02 Apr 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_fluctuations.m M /trunk/toolbox/DEM/spm_Manifold_solve.m Development work on Markov blanket demos ------------------------------------------------------------------------ r7053 | guillaume | 2017-04-03 12:04:13 +0100 (Mon, 03 Apr 2017) | 2 lines Changed paths: M /trunk/bin/spm12-octave M /trunk/external/Makefile.fieldtrip M /trunk/spm_jsonwrite.m M /trunk/src/spm_jsonread.c Enhancement: don't escape forward slash in JSON export and full support of symbolic links in bin. ------------------------------------------------------------------------ r7054 | john | 2017-04-04 13:09:32 +0100 (Tue, 04 Apr 2017) | 3 lines Changed paths: M /trunk/src/spm_field.c M /trunk/toolbox/Shoot/spm_shoot_greens.m * Included the ability to compute the log-determinant of the differential operator. * An attempt to stabilise spm_field slightly more. ------------------------------------------------------------------------ r7055 | john | 2017-04-07 20:04:46 +0100 (Fri, 07 Apr 2017) | 3 lines Changed paths: M /trunk/spm_preproc_write8.m Mask out zeros when writing the segmented images (c1, c2 etc). Note that this does not work well for "imported" images (rc1, rc2, etc), so Dartel/Shoot may not handle things well. ------------------------------------------------------------------------ r7056 | peter | 2017-04-10 16:49:19 +0100 (Mon, 10 Apr 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m Removed temporary nocd option from spm_dcm_peb.m ------------------------------------------------------------------------ r7057 | guillaume | 2017-04-13 17:45:49 +0100 (Thu, 13 Apr 2017) | 2 lines Changed paths: M /trunk/config/spm_run_fmri_est.m M /trunk/spm_provenance.m M /trunk/spm_results_nidm.m Enhancement: improvement to NIDM-Results export. ------------------------------------------------------------------------ r7058 | vladimir | 2017-04-18 11:58:51 +0100 (Tue, 18 Apr 2017) | 1 line Changed paths: M /trunk/spm_eeg_contrast.m Removed automatic zero padding as it could lead to wrong results in some cases. ------------------------------------------------------------------------ r7059 | vladimir | 2017-04-18 11:59:54 +0100 (Tue, 18 Apr 2017) | 1 line Changed paths: M /trunk/spm_eeg_combineplanar.m M /trunk/spm_eeg_ft2spm.m minor fixes ------------------------------------------------------------------------ r7060 | will | 2017-04-18 17:44:46 +0100 (Tue, 18 Apr 2017) | 1 line Changed paths: M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_estimate.m M /trunk/toolbox/dcm_fnirs/spm_dcm_fnirs_specify.m New functionality including (i) modelling of selected conditions only, (ii) removal of slow drifts after computing average signal over trials ------------------------------------------------------------------------ r7061 | guillaume | 2017-04-18 17:57:36 +0100 (Tue, 18 Apr 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: preliminary support for sessions in BIDS. ------------------------------------------------------------------------ r7062 | vladimir | 2017-04-19 10:24:11 +0100 (Wed, 19 Apr 2017) | 1 line Changed paths: M /trunk/spm_eeg_prep.m Bug fix (thanks to Andreea) ------------------------------------------------------------------------ r7063 | guillaume | 2017-04-19 11:49:44 +0100 (Wed, 19 Apr 2017) | 2 lines Changed paths: M /trunk/config/spm_rewrite_job.m Bug fix: better compatibility with old versions of the Results Report module. ------------------------------------------------------------------------ r7064 | guillaume | 2017-04-19 15:44:31 +0100 (Wed, 19 Apr 2017) | 2 lines Changed paths: M /trunk/spm_dcm_specify.m Bug fix: make sure SPM.swd is defined during DCM specification. ------------------------------------------------------------------------ r7065 | spm | 2017-04-20 14:57:48 +0100 (Thu, 20 Apr 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/bis2fieldtrip.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/ctf2grad.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/read_biosemi_bdf.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/forward/private/eeg_leadfield4.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqdescriptives.m M /trunk/external/fieldtrip/ft_headmovement.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_localspheres.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_prepare_singleshell.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m A /trunk/external/fieldtrip/plotting/ft_plot_cloud.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/ctf2grad.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m M /trunk/external/fieldtrip/private/prepare_headmodel.m M /trunk/external/fieldtrip/private/volumefillholes.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/src/platform.h M /trunk/external/fieldtrip/statfun/ft_statfun_actvsblT.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_brainvision_segmented.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m A /trunk/external/fieldtrip/utilities/private/dimindex.m M /trunk/external/fieldtrip/utilities/private/volumefillholes.m update of external/fieldtrip to a382841 ------------------------------------------------------------------------ r7066 | guillaume | 2017-04-20 15:36:29 +0100 (Thu, 20 Apr 2017) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_getfile.m Enhancement: faster execution if called in headless mode. ------------------------------------------------------------------------ r7067 | guillaume | 2017-04-20 17:49:53 +0100 (Thu, 20 Apr 2017) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_getfile.m Bug fix: use 'depth' option instead of 'flat' in r7066. ------------------------------------------------------------------------ r7068 | john | 2017-04-20 19:29:38 +0100 (Thu, 20 Apr 2017) | 2 lines Changed paths: M /trunk/spm_preproc_write8.m * Undone the last changes to spm_preproc8, as I introduced silly bugs, and there were too many side effects. ------------------------------------------------------------------------ r7069 | peter | 2017-04-24 11:15:20 +0100 (Mon, 24 Apr 2017) | 1 line Changed paths: M /trunk/spm_dcm_simulate.m Changed default behaviour of spm_dcm_simulate.m to use SNR estimated from the data ------------------------------------------------------------------------ r7070 | guillaume | 2017-04-26 11:23:27 +0100 (Wed, 26 Apr 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: improved support of multiple sessions and BIDS MEG. ------------------------------------------------------------------------ r7071 | peter | 2017-04-26 14:09:07 +0100 (Wed, 26 Apr 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m Added condition to ensure M.Q is handled properly ------------------------------------------------------------------------ r7072 | guillaume | 2017-04-28 17:52:36 +0100 (Fri, 28 Apr 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: further improvements to BIDS support. Needs refactoring. ------------------------------------------------------------------------ r7073 | guillaume | 2017-05-03 15:36:33 +0100 (Wed, 03 May 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: PET support and improved inheritance principle. Further refactoring needed. ------------------------------------------------------------------------ r7074 | guillaume | 2017-05-05 11:51:08 +0100 (Fri, 05 May 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m M /trunk/spm_cat_struct.m A /trunk/tests/test_spm_cat_struct.m Refactoring: first stab at refactoring some parts of spm_BIDS. ------------------------------------------------------------------------ r7075 | peter | 2017-05-10 16:08:31 +0100 (Wed, 10 May 2017) | 1 line Changed paths: M /trunk/spm_find_pC.m Updated spm_find_pC.m to not give a warning if a field named 'none' is requested but doesn't exist, as this is intended behaviour in spm_dcm_bmr. ------------------------------------------------------------------------ r7076 | vladimir | 2017-05-19 13:47:36 +0100 (Fri, 19 May 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invert.m added an option for 3 modalities which is different from 'all' ------------------------------------------------------------------------ r7077 | guillaume | 2017-05-23 10:13:10 +0100 (Tue, 23 May 2017) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c M /trunk/tests/test_spm_jsonread.m Bug fix: concatenating struct arrays in JSON import. ------------------------------------------------------------------------ r7078 | guillaume | 2017-05-23 10:41:43 +0100 (Tue, 23 May 2017) | 2 lines Changed paths: M /trunk/spm_field.mexa64 M /trunk/spm_jsonread.mexa64 Bug fix: new compilation on 64bit Linux following r7077. ------------------------------------------------------------------------ r7079 | guillaume | 2017-05-23 12:41:16 +0100 (Tue, 23 May 2017) | 1 line Changed paths: M /trunk/spm_field.mexmaci64 M /trunk/spm_jsonread.mexmaci64 Bug fix: new compilation on 64bit macOS following r7077 ------------------------------------------------------------------------ r7080 | guillaume | 2017-05-23 14:55:04 +0100 (Tue, 23 May 2017) | 2 lines Changed paths: M /trunk/EEGtemplates/fiducials.sfp Compatibility: removing empty line at end of file. ------------------------------------------------------------------------ r7081 | karl | 2017-05-27 20:36:09 +0100 (Sat, 27 May 2017) | 1 line Changed paths: M /trunk/spm_cva_ui.m M /trunk/spm_dcm_bma.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_bpa.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_mvb.m M /trunk/spm_reml_sc.m M /trunk/spm_sp_reml.m M /trunk/toolbox/DEM/FEP_MB_demo.m Minor cosmetic and graphical changes ------------------------------------------------------------------------ r7082 | karl | 2017-05-27 20:36:36 +0100 (Sat, 27 May 2017) | 1 line Changed paths: A /trunk/spm_dcm_sparse.m M /trunk/spm_eeg_invert.m addition of sparsity constraint on Bayesian model reduction (not properly evaluated at this stage) ------------------------------------------------------------------------ r7083 | spm | 2017-06-01 10:05:37 +0100 (Thu, 01 Jun 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_dtf.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_pdc.m A /trunk/external/fieldtrip/connectivity/private/coeffs2iis.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m A /trunk/external/fieldtrip/connectivity/private/transfer2coeffs.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/read_besa_besa.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendfreq.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_denoise_synthetic.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqinterpolate.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_mesh.m A /trunk/external/fieldtrip/ft_prepare_montage.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_regressconfound.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_stats.m M /trunk/external/fieldtrip/ft_stratify.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumereslice.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/ft_volumewrite.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_crosshair.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/ft_preproc_online_filter_apply.m M /trunk/external/fieldtrip/preproc/ft_preproc_online_filter_init.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m A /trunk/external/fieldtrip/private/append_common.m M /trunk/external/fieldtrip/private/checktime.m D /trunk/external/fieldtrip/private/crosshair.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/volplot.m M /trunk/external/fieldtrip/private/volumeedit.m A /trunk/external/fieldtrip/private/warp_dykstra2012.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_brainvision_segmented.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m D /trunk/external/fieldtrip/utilities/ft_warp_dykstra2012.m A /trunk/external/fieldtrip/utilities/match_val.m M /trunk/external/fieldtrip/utilities/private/align_ctf2spm.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m update of external/fieldtrip to ded071c ------------------------------------------------------------------------ r7084 | vladimir | 2017-06-01 11:40:24 +0100 (Thu, 01 Jun 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_artefact.m M /trunk/man/meeg_artefact/meeg_artefact.tex Minor fixes (thanks to Misun). ------------------------------------------------------------------------ r7085 | vladimir | 2017-06-01 11:42:01 +0100 (Thu, 01 Jun 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_artefact.m another small fix for missing parameter ------------------------------------------------------------------------ r7086 | guillaume | 2017-06-01 12:50:28 +0100 (Thu, 01 Jun 2017) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m M /trunk/toolbox/FieldMap/tbx_cfg_fieldmap.m Enhancements: standalone improvements. ------------------------------------------------------------------------ r7087 | peter | 2017-06-01 16:16:56 +0100 (Thu, 01 Jun 2017) | 1 line Changed paths: D /trunk/toolbox/Neural_Models/DEMO_dcm_fmri_nmm.m Deleted unused DEMO_dcm_fmri_nmm.m. The fMRI canonical microcircuit demo is the similarly named DEMO_dcm_fmri_nnm.m ------------------------------------------------------------------------ r7088 | guillaume | 2017-06-01 17:18:44 +0100 (Thu, 01 Jun 2017) | 2 lines Changed paths: A /trunk/spm_mkdir.m New feature: make new directories recursively. ------------------------------------------------------------------------ r7089 | guillaume | 2017-06-02 10:54:58 +0100 (Fri, 02 Jun 2017) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Enhancement: add compilation options to standalone. ------------------------------------------------------------------------ r7090 | guillaume | 2017-06-02 11:56:38 +0100 (Fri, 02 Jun 2017) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Bug fix: newline character on Windows. ------------------------------------------------------------------------ r7091 | guillaume | 2017-06-05 15:46:00 +0100 (Mon, 05 Jun 2017) | 3 lines Changed paths: M /trunk/config/spm_make_standalone.m M /trunk/spm_getSPM.m Enhancement: allow effect size threshold (Bayesian inference) to be defined via xSPM.gamma. Bug fix: don't change end of lines in Contents.txt. ------------------------------------------------------------------------ r7092 | guillaume | 2017-06-05 16:08:49 +0100 (Mon, 05 Jun 2017) | 2 lines Changed paths: M /trunk/spm_getSPM.m Bug fix: make sure the xSPM variable is defined for Bayesian inference. ------------------------------------------------------------------------ r7093 | guillaume | 2017-06-05 17:34:04 +0100 (Mon, 05 Jun 2017) | 2 lines Changed paths: M /trunk/config/spm_run_con.m Bug fix: initialisation of contrasts in Bayesian inference. ------------------------------------------------------------------------ r7094 | guillaume | 2017-06-06 12:14:10 +0100 (Tue, 06 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_inv_Mesh2Voxels.m M /trunk/spm_eeg_inv_results.m Doc: Clean log text in command window during execution. ------------------------------------------------------------------------ r7095 | vladimir | 2017-06-07 11:15:59 +0100 (Wed, 07 Jun 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_epochs.m Reverted Guillaume's change from November as it causes a problem (thanks to Misun) ------------------------------------------------------------------------ r7096 | vladimir | 2017-06-07 11:42:58 +0100 (Wed, 07 Jun 2017) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_eeg_plot_interactive.m fix for the case of one trial ------------------------------------------------------------------------ r7097 | guillaume | 2017-06-07 14:53:55 +0100 (Wed, 07 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_average_TF.m M /trunk/spm_load.m Enhancement: improved compatibility on multiple platforms. ------------------------------------------------------------------------ r7098 | guillaume | 2017-06-07 16:00:03 +0100 (Wed, 07 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_inv_datareg_ui.m Enhancement: run without graphic display when spm('CmdLine') is true. ------------------------------------------------------------------------ r7099 | guillaume | 2017-06-07 17:01:08 +0100 (Wed, 07 Jun 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Backward compatibility: use regexp instead of strsplit (introduced in R2013a). ------------------------------------------------------------------------ r7100 | guillaume | 2017-06-07 17:11:59 +0100 (Wed, 07 Jun 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m Backward compatibility: another adjustment for replacing strsplit. ------------------------------------------------------------------------ r7101 | peter | 2017-06-08 13:36:13 +0100 (Thu, 08 Jun 2017) | 1 line Changed paths: M /trunk/config/spm_run_dcm_bms.m A /trunk/tests/test_spm_run_dcm_bms.m Fix to spm_run_dcm_bms.m to decide whether DCMs are fMRI or non-fMRI using spm_dcm_identify.m . Added unit test. ------------------------------------------------------------------------ r7102 | peter | 2017-06-08 13:56:06 +0100 (Thu, 08 Jun 2017) | 1 line Changed paths: M /trunk/tests/test_spm_dcm_loo.m Fix to unit test tests/test_spm_dcm_loo.m ------------------------------------------------------------------------ r7103 | peter | 2017-06-08 15:39:32 +0100 (Thu, 08 Jun 2017) | 1 line Changed paths: M /trunk/tests/test_spm_run_dcm_bms.m Added unit test for running Bayesian Model Selection on a CSD DCM ------------------------------------------------------------------------ r7104 | guillaume | 2017-06-13 15:34:52 +0100 (Tue, 13 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_average.m M /trunk/spm_eeg_average_TF.m M /trunk/spm_eeg_montage.m Enhancements: cleaner display in command window. ------------------------------------------------------------------------ r7105 | spm | 2017-06-13 15:46:18 +0100 (Tue, 13 Jun 2017) | 1 line Changed paths: A /trunk/external/fieldtrip/connectivity/private/ctranspose2x2.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m D /trunk/external/fieldtrip/external/stats/iscomplex.m A /trunk/external/fieldtrip/external/stats/private/iscomplex.m (from /trunk/external/fieldtrip/external/stats/iscomplex.m:7104) M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_freqanalysis_mvar.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m update of external/fieldtrip to 1913a45 ------------------------------------------------------------------------ r7106 | spm | 2017-06-14 09:06:30 +0100 (Wed, 14 Jun 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/private/ReadHeader.m M /trunk/external/fieldtrip/fileio/private/avw_hdr_read.m M /trunk/external/fieldtrip/fileio/private/avw_img_read.m M /trunk/external/fieldtrip/fileio/private/decode_nifti1.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_spike.m M /trunk/external/fieldtrip/fileio/private/inifile.m M /trunk/external/fieldtrip/fileio/private/read_asa_mri.m M /trunk/external/fieldtrip/fileio/private/read_asa_vol.m M /trunk/external/fieldtrip/fileio/private/read_biff.m M /trunk/external/fieldtrip/fileio/private/read_bti_ascii.m M /trunk/external/fieldtrip/fileio/private/read_bti_hs.m M /trunk/external/fieldtrip/fileio/private/read_ctf_cls.m M /trunk/external/fieldtrip/fileio/private/read_ctf_dat.m M /trunk/external/fieldtrip/fileio/private/read_ctf_hc.m M /trunk/external/fieldtrip/fileio/private/read_ctf_sens.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shm.m M /trunk/external/fieldtrip/fileio/private/read_curry.m M /trunk/external/fieldtrip/fileio/private/read_micromed_event.m M /trunk/external/fieldtrip/fileio/private/read_polhemus_fil.m M /trunk/external/fieldtrip/fileio/private/read_sbin_events.m M /trunk/external/fieldtrip/fileio/private/read_tmsi_poly5.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_header.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_header_new.m M /trunk/external/fieldtrip/fileio/private/solid_angle.m M /trunk/external/fieldtrip/fileio/private/write_ctf_shm.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/private/eeg_infinite_monopole.m M /trunk/external/fieldtrip/forward/private/find_triangle_neighbours.m M /trunk/external/fieldtrip/forward/private/icosahedron2562.m M /trunk/external/fieldtrip/forward/private/leadfield_openmeeg.m M /trunk/external/fieldtrip/forward/private/leadsphere_all.m M /trunk/external/fieldtrip/forward/private/lmoutr.m M /trunk/external/fieldtrip/forward/private/normals.m M /trunk/external/fieldtrip/forward/private/ptriproj.m M /trunk/external/fieldtrip/forward/private/solid_angle.m M /trunk/external/fieldtrip/ft_artifact_jump.m M /trunk/external/fieldtrip/ft_artifact_muscle.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_sensorrealign.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_statistics_stats.m M /trunk/external/fieldtrip/inverse/private/SAM_costfun.m M /trunk/external/fieldtrip/inverse/private/calctangent.m M /trunk/external/fieldtrip/inverse/private/solid_angle.m M /trunk/external/fieldtrip/plotting/private/black.m M /trunk/external/fieldtrip/plotting/private/blue.m M /trunk/external/fieldtrip/plotting/private/brain.m M /trunk/external/fieldtrip/plotting/private/cortex.m M /trunk/external/fieldtrip/plotting/private/cortex_dark.m M /trunk/external/fieldtrip/plotting/private/cortex_light.m M /trunk/external/fieldtrip/plotting/private/green.m M /trunk/external/fieldtrip/plotting/private/icosahedron2562.m M /trunk/external/fieldtrip/plotting/private/ltrisect.m M /trunk/external/fieldtrip/plotting/private/red.m M /trunk/external/fieldtrip/plotting/private/select3d.m M /trunk/external/fieldtrip/plotting/private/select3dtool.m M /trunk/external/fieldtrip/plotting/private/skin.m M /trunk/external/fieldtrip/plotting/private/skull.m M /trunk/external/fieldtrip/plotting/private/white.m M /trunk/external/fieldtrip/plotting/private/yellow.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/private/avw_img_write.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/dftfilter.m M /trunk/external/fieldtrip/private/elec1020_intersect.m M /trunk/external/fieldtrip/private/find_triangle_neighbours.m M /trunk/external/fieldtrip/private/fixdimord.m M /trunk/external/fieldtrip/private/icosahedron2562.m M /trunk/external/fieldtrip/private/lmoutr.m M /trunk/external/fieldtrip/private/mesh_spectrum.m M /trunk/external/fieldtrip/private/moviefunction.m M /trunk/external/fieldtrip/private/normals.m M /trunk/external/fieldtrip/private/peakdetect2.m M /trunk/external/fieldtrip/private/prepare_design.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/prepare_resampled_data.m M /trunk/external/fieldtrip/private/ptriproj.m M /trunk/external/fieldtrip/private/read_besa_src.m M /trunk/external/fieldtrip/private/read_ctf_hc.m M /trunk/external/fieldtrip/private/routlm.m M /trunk/external/fieldtrip/private/select3d.m M /trunk/external/fieldtrip/private/select_channel_list.m M /trunk/external/fieldtrip/private/solid_angle.m M /trunk/external/fieldtrip/private/statistics_wrapper.m M /trunk/external/fieldtrip/private/tritrisect.m M /trunk/external/fieldtrip/private/volplot.m M /trunk/external/fieldtrip/private/wizard_base.m M /trunk/external/fieldtrip/spass2fieldtrip.m M /trunk/external/fieldtrip/specest/ft_specest_hilbert.m M /trunk/external/fieldtrip/specest/ft_specest_mtmconvol.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/external/fieldtrip/specest/ft_specest_neuvar.m M /trunk/external/fieldtrip/specest/ft_specest_tfr.m M /trunk/external/fieldtrip/specest/ft_specest_wavelet.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/src/lmoutr.m M /trunk/external/fieldtrip/src/ltrisect.m M /trunk/external/fieldtrip/src/meg_leadfield1.m M /trunk/external/fieldtrip/src/plinproj.m M /trunk/external/fieldtrip/src/ptriproj.m M /trunk/external/fieldtrip/src/read_16bit.m M /trunk/external/fieldtrip/src/read_24bit.m M /trunk/external/fieldtrip/src/read_ctf_shm.m M /trunk/external/fieldtrip/src/rfbevent.m M /trunk/external/fieldtrip/src/routlm.m M /trunk/external/fieldtrip/src/solid_angle.m M /trunk/external/fieldtrip/src/splint_gh.m M /trunk/external/fieldtrip/src/write_ctf_shm.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFmultivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesregrT.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesF.m M /trunk/external/fieldtrip/trialfun/private/select_channel_list.m M /trunk/external/fieldtrip/utilities/ft_datatype_spike.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/private/fixdimord.m M /trunk/external/fieldtrip/utilities/private/getaddress.m M /trunk/external/fieldtrip/utilities/private/lmoutr.m M /trunk/external/fieldtrip/utilities/private/ptriproj.m update of external/fieldtrip to 48a2194 ------------------------------------------------------------------------ r7107 | guillaume | 2017-06-14 10:31:40 +0100 (Wed, 14 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_average_TF.m A /trunk/tests/test_checkcode.m New feature: add test to detect syntax error(s) in any M-file. ------------------------------------------------------------------------ r7108 | guillaume | 2017-06-15 11:36:29 +0100 (Thu, 15 Jun 2017) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/tests/test_spm_jsonwrite.m Enhancement: Encode NaN and Inf as null in spm_jsonwrite for compatibility with jsonencode in R2017b. ------------------------------------------------------------------------ r7109 | guillaume | 2017-06-15 12:15:23 +0100 (Thu, 15 Jun 2017) | 2 lines Changed paths: M /trunk/spm_tests.m New feature: add Cobertura code coverage export for unit tests. ------------------------------------------------------------------------ r7110 | guillaume | 2017-06-15 12:45:05 +0100 (Thu, 15 Jun 2017) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_inv_priors.m M /trunk/spm_file.m M /trunk/spm_orthviews.m Compatibility: isdir() is not recommended in R2017b (new function isfolder()). ------------------------------------------------------------------------ r7111 | guillaume | 2017-06-16 10:01:09 +0100 (Fri, 16 Jun 2017) | 2 lines Changed paths: M /trunk/@meeg/montage.m M /trunk/spm_eeg_inv_visu3D_api.m M /trunk/spm_orthviews/spm_ov_movie.m M /trunk/tests/test_checkcode.m M /trunk/toolbox/DEM/DEM_birdsong.m M /trunk/toolbox/DEM/spm_DEM_ButtonDownFcn.m Compatibility: movie2avi/VideoWriter and wavwrite/audiowrite. ------------------------------------------------------------------------ r7112 | guillaume | 2017-06-16 12:30:37 +0100 (Fri, 16 Jun 2017) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_eeg_inv_datareg.m M /trunk/spm_figure.m M /trunk/spm_plot_convergence.m M /trunk/spm_powell.m M /trunk/spm_progress_bar.m Compatibility: remove DoubleBuffer property (no effect since R2013a). ------------------------------------------------------------------------ r7113 | peter | 2017-06-17 11:02:53 +0100 (Sat, 17 Jun 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m Fix to spm_dcm_peb.m to properly name fields when PEBs rather than DCMs are used as input. ------------------------------------------------------------------------ r7114 | spm | 2017-06-19 12:32:08 +0100 (Mon, 19 Jun 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/coeffs2iis.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m D /trunk/external/fieldtrip/external/stats/README.orig D /trunk/external/fieldtrip/external/stats/lgamma.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/meg_ini.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/append_common.m M /trunk/external/fieldtrip/private/prepare_mesh_cortexhull.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m update of external/fieldtrip to 6c92a78 ------------------------------------------------------------------------ r7115 | peter | 2017-06-19 16:11:00 +0100 (Mon, 19 Jun 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m Update to spm_dcm_peb.m to enable the field option to be numeric, facilitating PEB-of-PEBs. ------------------------------------------------------------------------ r7116 | guillaume | 2017-06-20 10:21:27 +0100 (Tue, 20 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_inv_forward.m Enhancement: save forward model using MAT-file default setting. ------------------------------------------------------------------------ r7117 | guillaume | 2017-06-20 10:40:24 +0100 (Tue, 20 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_crop.m Enhancement: faster execution by having call to trialonset() out of the loop. ------------------------------------------------------------------------ r7118 | guillaume | 2017-06-20 11:33:27 +0100 (Tue, 20 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_inv_prep_modes_xval.m M /trunk/spm_eeg_invert.m M /trunk/spm_eeg_invert_setuppatches.m M /trunk/spm_eeg_lgainmat.m M /trunk/spm_eeg_prep_ui.m M /trunk/spm_eeg_simulate.m Enhancement: further additions of MAT-file default setting. ------------------------------------------------------------------------ r7119 | guillaume | 2017-06-20 12:25:48 +0100 (Tue, 20 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_montage_ui.m Refactoring: save menu and warning message for EEG montages. ------------------------------------------------------------------------ r7120 | spm | 2017-06-20 12:30:30 +0100 (Tue, 20 Jun 2017) | 2 lines Changed paths: M /trunk/spm_BIDS.m M /trunk/spm_dcm_loo.m M /trunk/spm_dcm_mdp.m M /trunk/spm_dcm_peb.m M /trunk/spm_spm.m M /trunk/toolbox/DEM/spm_MDP_VB.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/FieldMap/pm_diff.m Doc: remove tabs. ------------------------------------------------------------------------ r7121 | guillaume | 2017-06-21 17:35:40 +0100 (Wed, 21 Jun 2017) | 2 lines Changed paths: A /trunk/spm_copy.m New feature: fancy copy. ------------------------------------------------------------------------ r7122 | guillaume | 2017-06-22 15:54:01 +0100 (Thu, 22 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_morlet.m M /trunk/spm_eeg_specest_morlet.m M /trunk/spm_eeg_tf.m Enhancement: use a convolution matrix instead of repeated calls to conv() for Morlet wavelet transform. ------------------------------------------------------------------------ r7123 | spm | 2017-06-23 09:36:54 +0100 (Fri, 23 Jun 2017) | 2 lines Changed paths: M /trunk/external/bemcp/bem_Cii_cog.c M /trunk/external/bemcp/bem_Cii_cst.c M /trunk/external/bemcp/bem_Cii_lin.c M /trunk/external/bemcp/bem_Cij_cog.c M /trunk/external/bemcp/bem_Cij_cst.c M /trunk/external/bemcp/bem_Cij_lin.c M /trunk/external/bemcp/bem_Gi_cog.c M /trunk/external/bemcp/bem_Gi_vert.c Enhancement: remove unnecessary display. ------------------------------------------------------------------------ r7124 | spm | 2017-06-23 10:10:58 +0100 (Fri, 23 Jun 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/fixname.m A /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m A /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/forward/private/fixname.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m A /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/ft_warning.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/private/fixname.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/private/fixname.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m A /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_warning.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/private/fixname.m A /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/ft_warning.m M /trunk/external/fieldtrip/private/append_common.m M /trunk/external/fieldtrip/private/fixname.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/mergeconfig.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/specest/private/fixname.m A /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_warning.m M /trunk/external/fieldtrip/statfun/private/fixname.m A /trunk/external/fieldtrip/statfun/private/ft_notification.m M /trunk/external/fieldtrip/statfun/private/ft_warning.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m A /trunk/external/fieldtrip/utilities/ft_debug.m A /trunk/external/fieldtrip/utilities/ft_error.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m A /trunk/external/fieldtrip/utilities/ft_info.m A /trunk/external/fieldtrip/utilities/ft_notice.m M /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/private/fixname.m A /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m update of external/fieldtrip to 1feaa5a ------------------------------------------------------------------------ r7125 | guillaume | 2017-06-23 10:49:29 +0100 (Fri, 23 Jun 2017) | 2 lines Changed paths: M /trunk/spm_eeg_average.m M /trunk/spm_eeg_average_TF.m M /trunk/spm_eeg_combineplanar.m M /trunk/spm_eeg_convert.m M /trunk/spm_eeg_convert2images.m M /trunk/spm_eeg_downsample.m M /trunk/spm_eeg_epochs.m M /trunk/spm_eeg_filter.m M /trunk/spm_eeg_merge.m M /trunk/spm_eeg_montage.m M /trunk/spm_eeg_tf.m Doc: display information about M/EEG computations. ------------------------------------------------------------------------ r7126 | spm | 2017-06-23 14:32:51 +0100 (Fri, 23 Jun 2017) | 2 lines Changed paths: M /trunk/external/mne/fiff_read_bad_channels.m M /trunk/external/mne/fiff_read_events.m M /trunk/external/mne/fiff_read_meas_info.m M /trunk/external/mne/fiff_read_raw_segment.m M /trunk/external/mne/fiff_setup_read_raw.m Enhancement: compatibility with Octave and remove display. ------------------------------------------------------------------------ r7127 | gareth | 2017-06-29 10:25:24 +0100 (Thu, 29 Jun 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m jimmy's changes to cross-val ------------------------------------------------------------------------ r7128 | vladimir | 2017-07-03 12:58:47 +0100 (Mon, 03 Jul 2017) | 1 line Changed paths: M /trunk/spm_eeg_spatial_confounds.m bug fix (thanks to Misun). ------------------------------------------------------------------------ r7129 | guillaume | 2017-07-04 17:24:53 +0100 (Tue, 04 Jul 2017) | 2 lines Changed paths: M /trunk/spm_eeg_specest_morlet.m Refactoring: remove the change to use convolution matrices as it requires a lot of memory for continuous data. The code should use one of the two implementations depending on Nchannels and Nfrequencies. ------------------------------------------------------------------------ r7130 | john | 2017-07-04 18:43:49 +0100 (Tue, 04 Jul 2017) | 5 lines Changed paths: M /trunk/spm_preproc_write8.m M /trunk/src/shoot_optimN.c M /trunk/src/spm_field.c * spm_preproc_write8.m - undone a bug fix that didn't quite work * src/spm_field.c - added regularisation for extra stability * src/shoot_optimN.c - decreased a tolerance in the cholesky decomposition as it was too high ------------------------------------------------------------------------ r7131 | spm | 2017-07-07 16:26:35 +0100 (Fri, 07 Jul 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_corr.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_dtf.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_pdc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_powcorr_ortho.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_ppc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_psi.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_wpli.m M /trunk/external/fieldtrip/connectivity/private/det2x2.m M /trunk/external/fieldtrip/connectivity/private/fixname.m M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/connectivity/private/getsubfield.m M /trunk/external/fieldtrip/connectivity/private/inv2x2.m M /trunk/external/fieldtrip/connectivity/private/keyval.m M /trunk/external/fieldtrip/connectivity/private/rmsubfield.m M /trunk/external/fieldtrip/connectivity/private/setsubfield.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m M /trunk/external/fieldtrip/connectivity/private/standardise.m M /trunk/external/fieldtrip/connectivity/private/transfer2coeffs.m M /trunk/external/fieldtrip/fieldtrip2besa.m M /trunk/external/fieldtrip/fieldtrip2ctf.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fieldtrip2spss.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_create_buffer.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_filter_event.m M /trunk/external/fieldtrip/fileio/ft_flush_data.m M /trunk/external/fieldtrip/fileio/ft_flush_event.m M /trunk/external/fieldtrip/fileio/ft_flush_header.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_event.m M /trunk/external/fieldtrip/fileio/ft_write_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m M /trunk/external/fieldtrip/fileio/ft_write_sens.m M /trunk/external/fieldtrip/fileio/ft_write_spike.m M /trunk/external/fieldtrip/fileio/private/avw_hdr_read.m M /trunk/external/fieldtrip/fileio/private/avw_img_read.m M /trunk/external/fieldtrip/fileio/private/bti2grad.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/cstructdecode.m M /trunk/external/fieldtrip/fileio/private/ctf2grad.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/db_insert.m M /trunk/external/fieldtrip/fileio/private/db_open.m M /trunk/external/fieldtrip/fileio/private/db_select.m M /trunk/external/fieldtrip/fileio/private/dimlength.m M /trunk/external/fieldtrip/fileio/private/elproj.m M /trunk/external/fieldtrip/fileio/private/fif2grad.m M /trunk/external/fieldtrip/fileio/private/fiff_open_le.m M /trunk/external/fieldtrip/fileio/private/filetype_check_uri.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_comp.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_freq.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_mvar.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_spike.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_vol.m M /trunk/external/fieldtrip/fileio/private/ft_estimate_units.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_findcfg.m M 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/trunk/external/fieldtrip/utilities/private/ft_test_run.m M /trunk/external/fieldtrip/utilities/private/ft_urlread.m M /trunk/external/fieldtrip/utilities/private/funargname.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/labelcmb2indx.m M /trunk/external/fieldtrip/utilities/private/leaveoneout.m M /trunk/external/fieldtrip/utilities/private/lmoutr.m M /trunk/external/fieldtrip/utilities/private/loadvar.m M /trunk/external/fieldtrip/utilities/private/ptriproj.m M /trunk/external/fieldtrip/utilities/private/quaternion.m M /trunk/external/fieldtrip/utilities/private/refine.m M /trunk/external/fieldtrip/utilities/private/rigidbody.m M /trunk/external/fieldtrip/utilities/private/rotate.m M /trunk/external/fieldtrip/utilities/private/scale.m M /trunk/external/fieldtrip/utilities/private/selfromraw.m M /trunk/external/fieldtrip/utilities/private/seloverdim.m M /trunk/external/fieldtrip/utilities/private/selparam.m M /trunk/external/fieldtrip/utilities/private/struct2table.m M /trunk/external/fieldtrip/utilities/private/translate.m M /trunk/external/fieldtrip/utilities/private/undobalancing.m M /trunk/external/fieldtrip/utilities/private/volumefillholes.m M /trunk/external/fieldtrip/utilities/private/volumeflip.m M /trunk/external/fieldtrip/utilities/private/volumepermute.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m M /trunk/external/fieldtrip/utilities/removefields.m M /trunk/external/fieldtrip/utilities/renamefields.m M /trunk/external/fieldtrip/utilities/rmsubfield.m M /trunk/external/fieldtrip/utilities/setsubfield.m update of external/fieldtrip to b65288f ------------------------------------------------------------------------ r7132 | guillaume | 2017-07-10 17:22:58 +0100 (Mon, 10 Jul 2017) | 1 line Changed paths: M /trunk/spm_eeg_artefact.m M /trunk/spm_eeg_artefact_events.m M /trunk/spm_eeg_artefact_eyeblink.m M /trunk/spm_eeg_artefact_flat.m M /trunk/spm_eeg_artefact_heartbeat.m M /trunk/spm_eeg_artefact_jump.m M /trunk/spm_eeg_artefact_nans.m M /trunk/spm_eeg_artefact_peak2peak.m M /trunk/spm_eeg_artefact_saccade.m M /trunk/spm_eeg_artefact_threshchan.m M /trunk/spm_eeg_artefact_zscore.m M /trunk/spm_eeg_artefact_zscorediff.m M /trunk/spm_eeg_assemble_priors.m M /trunk/spm_eeg_avgfreq.m M /trunk/spm_eeg_avgtime.m M /trunk/spm_eeg_bc.m M /trunk/spm_eeg_collapse_timefreq.m M /trunk/spm_eeg_combineplanar.m M /trunk/spm_eeg_contrast.m M /trunk/spm_eeg_copy.m M /trunk/spm_eeg_correct_sensor_data.m M /trunk/spm_eeg_crop.m M /trunk/spm_eeg_definetrial.m M /trunk/spm_eeg_dipoles_ui.m Doc: adjustments to help text. ------------------------------------------------------------------------ r7133 | spm | 2017-07-10 17:25:00 +0100 (Mon, 10 Jul 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_notification.m A /trunk/external/fieldtrip/connectivity/private/istrue.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_notification.m A /trunk/external/fieldtrip/specest/private/istrue.m M /trunk/external/fieldtrip/statfun/private/ft_notification.m A /trunk/external/fieldtrip/statfun/private/istrue.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m update of external/fieldtrip to ef53928 ------------------------------------------------------------------------ r7134 | guillaume | 2017-07-18 10:46:25 +0100 (Tue, 18 Jul 2017) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_eeg_montage.m Enhancement: disable backtrace for FieldTrip's warnings globally. ------------------------------------------------------------------------ r7135 | spm | 2017-07-18 11:29:33 +0100 (Tue, 18 Jul 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/statfun/private/ft_notification.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m update of external fieldtrip to 93bf9d3 ------------------------------------------------------------------------ r7136 | john | 2017-07-18 11:51:48 +0100 (Tue, 18 Jul 2017) | 4 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/src/shoot_optimN.c M /trunk/toolbox/Shoot/spm_shoot_greens.m * spm_shoot_greens.m: Speeded it up slightly, at the expense of using slightly more memory. * shoot_optimN.c: Slight change to some tolerances. Unlikely to make much difference in practice. * spm_dicom_convert.m: Fixed a tiny spelling mistake in the comments. ------------------------------------------------------------------------ r7137 | guillaume | 2017-07-19 16:07:34 +0100 (Wed, 19 Jul 2017) | 2 lines Changed paths: M /trunk/spm_reml.m Enhancement: add robustness check to ReML to preclude inappropriate recursions. ------------------------------------------------------------------------ r7138 | guillaume | 2017-07-21 11:57:37 +0100 (Fri, 21 Jul 2017) | 2 lines Changed paths: A /trunk/spm_get_dataset.m New feature: download entire datasets. ------------------------------------------------------------------------ r7139 | guillaume | 2017-07-24 11:54:11 +0100 (Mon, 24 Jul 2017) | 2 lines Changed paths: M /trunk/spm_eeg_grandmean.m Enhancement: optional graphic display for M/EEG grand average. ------------------------------------------------------------------------ r7140 | guillaume | 2017-07-25 09:53:35 +0100 (Tue, 25 Jul 2017) | 2 lines Changed paths: M /trunk/spm_reslice.m Enhancement: prevent hanging interactive mode when no input images are provided (as can happen in batch mode). ------------------------------------------------------------------------ r7141 | guillaume | 2017-07-26 10:05:05 +0100 (Wed, 26 Jul 2017) | 2 lines Changed paths: M /trunk/config/spm_run_realign.m M /trunk/spm_realign.m M /trunk/spm_reslice.m Enhancement: further adjustments for realignment if job is empty. ------------------------------------------------------------------------ r7142 | karl | 2017-07-26 21:38:45 +0100 (Wed, 26 Jul 2017) | 3 lines Changed paths: M /trunk/spm_diff.m M /trunk/spm_nlsi_N.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_erp_L.m Introduction of a global step size for numerical derivatives in spm_diff.m (to finesse convergence problems in DCM for ERP). Removal of check for head model changes in spm_erp_L.m Minor changes to update criteria in spm_nsli_N ------------------------------------------------------------------------ r7143 | karl | 2017-07-29 19:50:38 +0100 (Sat, 29 Jul 2017) | 3 lines Changed paths: A /trunk/spm_ddiff.m M /trunk/spm_diff.m A /trunk/spm_diff_dx.m M /trunk/spm_int_L.m M /trunk/spm_inv.m M /trunk/spm_nlsi_N.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_ind.m Conditioning of Jacobian applied prior to matrix inversion in spm_int_L.m Removal of global finite difference size from spm_dcm_erp.m Other cosmetic changes ------------------------------------------------------------------------ r7144 | karl | 2017-07-31 14:55:55 +0100 (Mon, 31 Jul 2017) | 1 line Changed paths: M /trunk/spm_dx.m Substantial upgrade to spm_dx using efficient matrix exponential operators from Expokit ------------------------------------------------------------------------ r7145 | karl | 2017-07-31 14:57:39 +0100 (Mon, 31 Jul 2017) | 2 lines Changed paths: M /trunk/spm_ADEM.m A /trunk/toolbox/DEM/DEM_cells.m A /trunk/toolbox/DEM/DEM_cells_cells.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_morphogenesis.m Minor Revisions to spm_ADEM (allowing users to place prior precision over action). Addition of cell simulation routines to demonstrate self organisation and formation of Markov blankets ------------------------------------------------------------------------ r7146 | guillaume | 2017-08-02 10:30:25 +0100 (Wed, 02 Aug 2017) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c Bug fix: optional parameter names were case sensitive. Thanks to Brian W. ------------------------------------------------------------------------ r7147 | spm | 2017-08-03 15:07:01 +0100 (Thu, 03 Aug 2017) | 2 lines Changed paths: M /trunk/@file_array/Contents.m M /trunk/@file_array/cat.m M /trunk/@file_array/ctranspose.m M /trunk/@file_array/disp.m M /trunk/@file_array/display.m M /trunk/@file_array/double.m M /trunk/@file_array/end.m M /trunk/@file_array/fieldnames.m M /trunk/@file_array/file_array.m M /trunk/@file_array/horzcat.m M /trunk/@file_array/initialise.m M /trunk/@file_array/isnan.m M /trunk/@file_array/length.m M /trunk/@file_array/loadobj.m M /trunk/@file_array/ndims.m M /trunk/@file_array/numel.m M /trunk/@file_array/numeric.m M /trunk/@file_array/permute.m M /trunk/@file_array/private/datatypes.m M /trunk/@file_array/private/dim.m M /trunk/@file_array/private/dtype.m M /trunk/@file_array/private/file2mat.m M /trunk/@file_array/private/fname.m M /trunk/@file_array/private/init.m M /trunk/@file_array/private/mat2file.m M /trunk/@file_array/private/mystruct.m M /trunk/@file_array/private/offset.m M /trunk/@file_array/private/permission.m M /trunk/@file_array/private/resize_scales.m M /trunk/@file_array/private/scl_inter.m M /trunk/@file_array/private/scl_slope.m M /trunk/@file_array/reshape.m M /trunk/@file_array/size.m M /trunk/@file_array/subsasgn.m M /trunk/@file_array/subsref.m M /trunk/@file_array/transpose.m M /trunk/@file_array/vertcat.m M /trunk/@nifti/Contents.m M /trunk/@nifti/create.m M /trunk/@nifti/disp.m M /trunk/@nifti/display.m M /trunk/@nifti/fieldnames.m M /trunk/@nifti/nifti.m M /trunk/@nifti/private/M2Q.m M /trunk/@nifti/private/Q2M.m M /trunk/@nifti/private/decode_qform0.m M /trunk/@nifti/private/empty_hdr.m M /trunk/@nifti/private/encode_qform0.m M /trunk/@nifti/private/findindict.m M /trunk/@nifti/private/getdict.m M /trunk/@nifti/private/mayo2nifti1.m M /trunk/@nifti/private/mayostruc.m M /trunk/@nifti/private/nifti1struc.m M /trunk/@nifti/private/nifti2struc.m M /trunk/@nifti/private/nifti_stats.m M /trunk/@nifti/private/nifti_stats_mex.c M /trunk/@nifti/private/niftistruc.m M /trunk/@nifti/private/read_extras.m M /trunk/@nifti/private/read_hdr.m M /trunk/@nifti/private/write_extras.m M /trunk/@nifti/private/write_hdr_raw.m M /trunk/@nifti/structn.m M /trunk/@nifti/subsasgn.m M /trunk/@nifti/subsref.m Doc: Apply MLINT suggestions to @nifti and @file_array. ------------------------------------------------------------------------ r7148 | karl | 2017-08-04 16:27:29 +0100 (Fri, 04 Aug 2017) | 2 lines Changed paths: M /trunk/spm_dcm_delay.m M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_fs_csd.m M /trunk/toolbox/dcm_meeg/spm_int_U.m Minor prettifications AR coefficient reduced in feature selection for DCM for CSD (from 8 to 2) ------------------------------------------------------------------------ r7149 | karl | 2017-08-08 14:14:36 +0100 (Tue, 08 Aug 2017) | 1 line Changed paths: M /trunk/spm_dcm_delay.m M /trunk/tests/ROBOT_DCM_EEG.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm.m ------------------------------------------------------------------------ r7150 | karl | 2017-08-08 20:57:33 +0100 (Tue, 08 Aug 2017) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_I3_and_TS.m M /trunk/toolbox/DEM/DEM_cells.m M /trunk/toolbox/DEM/DEM_cells_cells.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_self_MI_a.m A /trunk/toolbox/DEM/DEM_self_MI_b.m A /trunk/toolbox/DEM/DEM_self_MI_c.m Upgrade of morphogenesis demo and addition of self organization demo (in DEM) in terms of conditional mutual information ------------------------------------------------------------------------ r7151 | peter | 2017-08-10 10:21:18 +0100 (Thu, 10 Aug 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m Updated DCM estimation batch to only overwrite original DCMs when requested ------------------------------------------------------------------------ r7152 | peter | 2017-08-10 10:32:47 +0100 (Thu, 10 Aug 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m Further update to the DCM estimation batch to automatically disable stochastic DCM if in CSD mode (fMRI) ------------------------------------------------------------------------ r7153 | adeel | 2017-08-10 11:18:14 +0100 (Thu, 10 Aug 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m fixed a typo ------------------------------------------------------------------------ r7154 | karl | 2017-08-10 21:45:05 +0100 (Thu, 10 Aug 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/FEP_fluctuations.m A /trunk/toolbox/DEM/FEP_physics.m Addition of FEP demo looking at physics ------------------------------------------------------------------------ r7155 | john | 2017-08-17 11:55:05 +0100 (Thu, 17 Aug 2017) | 12 lines Changed paths: M /trunk/man/auditory/auditory.tex M /trunk/man/dartelguide/dartelguide.tex M /trunk/src/shoot_regularisers.c M /trunk/toolbox/DARTEL/spm_dartel_warp.m M /trunk/toolbox/DARTEL/tbx_cfg_dartel.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m M /trunk/toolbox/OldNorm/spm_cfg_normalise.m M /trunk/toolbox/Shoot/tbx_cfg_shoot.m * Changed some documentation to include additional references. - toolbox/OldNorm/spm_cfg_normalise.m - toolbox/DARTEL/tbx_cfg_dartel.m - toolbox/Longitudinal/tbx_cfg_longitudinal.m - toolbox/Shoot/tbx_cfg_shoot.m - man/dartelguide/dartelguide.tex - man/auditory/auditory.tex * Fiddled with attempts to gain numerical stability. - src/shoot_regularisers.c * Disabled masking out NaNs, so that missing data are handled better (thanks to Christian Buechel) - toolbox/DARTEL/spm_dartel_warp.m ------------------------------------------------------------------------ r7156 | peter | 2017-08-17 17:44:05 +0100 (Thu, 17 Aug 2017) | 1 line Changed paths: A /trunk/toolbox/FieldMap/FIL/pm_defaults_Prisma.m Added fieldmaps defaults file for the Siemens Prisma scanner ------------------------------------------------------------------------ r7157 | karl | 2017-08-18 12:31:31 +0100 (Fri, 18 Aug 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_physics.m Development work on physics FEP demo ------------------------------------------------------------------------ r7158 | spm | 2017-08-24 11:38:24 +0100 (Thu, 24 Aug 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/README M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/private/coeffs2iis.m A /trunk/external/fieldtrip/connectivity/private/defaultId.m M /trunk/external/fieldtrip/connectivity/private/fixname.m M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/connectivity/private/getsubfield.m M /trunk/external/fieldtrip/connectivity/private/istrue.m M /trunk/external/fieldtrip/connectivity/private/rmsubfield.m M /trunk/external/fieldtrip/connectivity/private/setsubfield.m A /trunk/external/fieldtrip/connectivity/transfer2coeffs.m M /trunk/external/fieldtrip/fileio/ft_read_header.m A /trunk/external/fieldtrip/fileio/private/defaultId.m M /trunk/external/fieldtrip/fileio/private/fixname.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/private/getsubfield.m M /trunk/external/fieldtrip/fileio/private/istrue.m M /trunk/external/fieldtrip/fileio/private/rmsubfield.m M /trunk/external/fieldtrip/fileio/private/setsubfield.m A /trunk/external/fieldtrip/forward/private/defaultId.m M /trunk/external/fieldtrip/forward/private/fixname.m M /trunk/external/fieldtrip/forward/private/ft_getopt.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/getsubfield.m M /trunk/external/fieldtrip/forward/private/istrue.m M /trunk/external/fieldtrip/forward/private/rmsubfield.m M /trunk/external/fieldtrip/forward/private/setsubfield.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqdescriptives.m M /trunk/external/fieldtrip/ft_freqsimulation.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_sliceinterp.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m A /trunk/external/fieldtrip/inverse/private/defaultId.m M /trunk/external/fieldtrip/inverse/private/fixname.m M /trunk/external/fieldtrip/inverse/private/ft_getopt.m A /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m A /trunk/external/fieldtrip/inverse/private/ft_warning.m M /trunk/external/fieldtrip/inverse/private/getsubfield.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m A /trunk/external/fieldtrip/plotting/private/defaultId.m M /trunk/external/fieldtrip/plotting/private/fixname.m M /trunk/external/fieldtrip/plotting/private/ft_getopt.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/plotting/private/getsubfield.m M /trunk/external/fieldtrip/plotting/private/istrue.m M /trunk/external/fieldtrip/plotting/private/rmsubfield.m M /trunk/external/fieldtrip/plotting/private/setsubfield.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m A /trunk/external/fieldtrip/preproc/private/defaultId.m M /trunk/external/fieldtrip/preproc/private/fixname.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/private/istrue.m M /trunk/external/fieldtrip/private/append_common.m A /trunk/external/fieldtrip/private/defaultId.m M /trunk/external/fieldtrip/private/fixname.m M /trunk/external/fieldtrip/private/getsubfield.m M /trunk/external/fieldtrip/private/mergeconfig.m M /trunk/external/fieldtrip/private/rmsubfield.m M /trunk/external/fieldtrip/private/setsubfield.m A /trunk/external/fieldtrip/specest/private/defaultId.m M /trunk/external/fieldtrip/specest/private/fixname.m M /trunk/external/fieldtrip/specest/private/ft_getopt.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/getsubfield.m M /trunk/external/fieldtrip/specest/private/istrue.m M /trunk/external/fieldtrip/specest/private/rmsubfield.m M /trunk/external/fieldtrip/specest/private/setsubfield.m A /trunk/external/fieldtrip/statfun/private/defaultId.m M /trunk/external/fieldtrip/statfun/private/fixname.m M /trunk/external/fieldtrip/statfun/private/ft_notification.m M /trunk/external/fieldtrip/statfun/private/getsubfield.m M /trunk/external/fieldtrip/statfun/private/istrue.m M /trunk/external/fieldtrip/statfun/private/rmsubfield.m M /trunk/external/fieldtrip/statfun/private/setsubfield.m A /trunk/external/fieldtrip/trialfun/private/defaultId.m M /trunk/external/fieldtrip/utilities/ft_checkopt.m M /trunk/external/fieldtrip/utilities/ft_getopt.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/getsubfield.m M /trunk/external/fieldtrip/utilities/istrue.m A /trunk/external/fieldtrip/utilities/private/defaultId.m M /trunk/external/fieldtrip/utilities/private/fixname.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m M /trunk/external/fieldtrip/utilities/rmsubfield.m M /trunk/external/fieldtrip/utilities/setsubfield.m update of external/fieldtrip to 94813f5 ------------------------------------------------------------------------ r7159 | adeel | 2017-08-24 15:16:51 +0100 (Thu, 24 Aug 2017) | 1 line Changed paths: M /trunk/spm_dcm_fmri_csd.m making variables consistent across spm_dcm_estimate() ------------------------------------------------------------------------ r7160 | karl | 2017-08-25 09:11:30 +0100 (Fri, 25 Aug 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/FEP_physics.m development work on FEP_physics.m ------------------------------------------------------------------------ r7161 | karl | 2017-08-26 20:29:24 +0100 (Sat, 26 Aug 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_physics.m Further development on physics FEP demo ------------------------------------------------------------------------ r7162 | guillaume | 2017-08-30 12:47:07 +0100 (Wed, 30 Aug 2017) | 2 lines Changed paths: M /trunk/spm_mvb_display.m M /trunk/spm_mvb_ui.m Enhancement: MVB display and print. ------------------------------------------------------------------------ r7163 | karl | 2017-09-04 10:12:50 +0100 (Mon, 04 Sep 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_MB_demo.m M /trunk/toolbox/DEM/FEP_Manifold.m M /trunk/toolbox/DEM/FEP_fluctuations.m A /trunk/toolbox/DEM/spm_soup.m development work on free energy physics demos (synthetic soup) ------------------------------------------------------------------------ r7164 | karl | 2017-09-07 14:46:00 +0100 (Thu, 07 Sep 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_MB_demo.m Development work on Markov blanket demo ------------------------------------------------------------------------ r7165 | spm | 2017-09-07 14:52:24 +0100 (Thu, 07 Sep 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m A /trunk/external/fieldtrip/fileio/private/ft_determine_units.m M /trunk/external/fieldtrip/fileio/private/read_besa_besa.m M /trunk/external/fieldtrip/fileio/private/write_bioimage_mgrid.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/ft_convert_units.m A /trunk/external/fieldtrip/forward/ft_determine_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_concentricspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_singleshell.m M /trunk/external/fieldtrip/forward/ft_headmodel_singlesphere.m M /trunk/external/fieldtrip/forward/ft_transform_headshape.m M /trunk/external/fieldtrip/forward/ft_transform_sens.m M /trunk/external/fieldtrip/forward/ft_transform_vol.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m A /trunk/external/fieldtrip/ft_artifact_nan.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_megplanar.m A /trunk/external/fieldtrip/ft_meshrealign.m M /trunk/external/fieldtrip/ft_prepare_bemmodel.m M /trunk/external/fieldtrip/ft_prepare_concentricspheres.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_localspheres.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_singleshell.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_regressconfound.m D /trunk/external/fieldtrip/ft_sensorrealign.m D /trunk/external/fieldtrip/ft_surfacerealign.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_montage.m M /trunk/external/fieldtrip/plotting/private/coordsys2label.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m A /trunk/external/fieldtrip/plotting/private/ft_determine_units.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/private/atlas_lookup.m A /trunk/external/fieldtrip/private/coordsys2label.m M /trunk/external/fieldtrip/private/prepare_mesh_segmentation.m A /trunk/external/fieldtrip/private/setviewpoint.m M /trunk/external/fieldtrip/private/warp_dykstra2012.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_notice.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m M /trunk/external/fieldtrip/utilities/private/align_ctf2acpc.m M /trunk/external/fieldtrip/utilities/private/align_fsaverage2mni.m M /trunk/external/fieldtrip/utilities/private/align_neuromag2acpc.m M /trunk/external/fieldtrip/utilities/private/coordsys2label.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m update of external/fieldtrip to 0a8bd13 ------------------------------------------------------------------------ r7166 | karl | 2017-09-08 20:07:09 +0100 (Fri, 08 Sep 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/FEP_MB_demo.m M /trunk/toolbox/DEM/spm_Manifold_solve.m Development work on Markov blanket demo ------------------------------------------------------------------------ r7167 | spm | 2017-09-14 11:49:23 +0100 (Thu, 14 Sep 2017) | 1 line Changed paths: M /trunk/external/mne/fiff_define_constants.m M /trunk/external/mne/fiff_read_epochs.m A /trunk/external/mne/fiff_read_hpi_result.m M /trunk/external/mne/fiff_read_meas_info.m M /trunk/external/mne/fiff_read_raw_segment.m M /trunk/external/mne/fiff_setup_read_raw.m M /trunk/external/mne/fiff_write_int_matrix.m A /trunk/external/mne/mne_babyMEG_dig_trig.m M /trunk/external/mne/mne_load_coil_def.m update of external/mne to 9cd4acf ------------------------------------------------------------------------ r7168 | guillaume | 2017-09-19 11:24:02 +0100 (Tue, 19 Sep 2017) | 2 lines Changed paths: M /trunk/spm_orthviews.m Refactoring: reorganising redraw() subfunction. ------------------------------------------------------------------------ r7169 | vladimir | 2017-09-19 11:42:27 +0100 (Tue, 19 Sep 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_headmodel.m M /trunk/config/spm_cfg_eeg_prepare.m M /trunk/spm_eeg_inv_checkforward.m M /trunk/spm_eeg_montage.m M /trunk/spm_eeg_planarchannelset.m M /trunk/spm_eeg_prep.m M /trunk/spm_eeg_prep_ui.m M /trunk/spm_eeg_review_switchDisplay.m Added support for MEG BIDS for specification of events, channels and fiducials. ------------------------------------------------------------------------ r7170 | guillaume | 2017-09-21 11:59:34 +0100 (Thu, 21 Sep 2017) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m Enhancement: compatibility with R2017b. ------------------------------------------------------------------------ r7171 | guillaume | 2017-09-21 12:11:00 +0100 (Thu, 21 Sep 2017) | 2 lines Changed paths: M /trunk/spm_get_dataset.m Enhancement: add option to select dataset revision. ------------------------------------------------------------------------ r7172 | john | 2017-09-21 17:31:30 +0100 (Thu, 21 Sep 2017) | 5 lines Changed paths: M /trunk/spm_preproc8.m M /trunk/src/shoot_optimN.c M /trunk/src/spm_mrf.c * spm_preproc8.m: Changes should not make any difference to results. Allowed for the possibility of regularising the mixing weights. * src/shoot_optimN.c: Fixed what I thought was a bug, but which wasn't. Code now slightly easier to follow, but results remain unchanged. * src/spm_mrf.c: Thought I'd made things more stable by preventing overflows. Doesn't seem to make any difference in practice though. ------------------------------------------------------------------------ r7173 | guillaume | 2017-09-22 12:26:31 +0100 (Fri, 22 Sep 2017) | 2 lines Changed paths: M /trunk/spm_defaults.m Enhancement: increasing defaults.stats.maxmem to 2^29. ------------------------------------------------------------------------ r7174 | gareth | 2017-09-22 13:53:53 +0100 (Fri, 22 Sep 2017) | 1 line Changed paths: A /trunk/toolbox/MEEGtools/eb_read_lvm.m A /trunk/toolbox/MEEGtools/spm_opm_convert.m A /trunk/toolbox/MEEGtools/spm_opm_denoise.m Tim Tierney's new OPM functions ------------------------------------------------------------------------ r7175 | vladimir | 2017-09-26 15:50:54 +0100 (Tue, 26 Sep 2017) | 1 line Changed paths: M /trunk/spm_eeg_prep.m Fix to planar type definition from BIDS ------------------------------------------------------------------------ r7176 | karl | 2017-09-26 20:02:39 +0100 (Tue, 26 Sep 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_evidence_accumulation.m M /trunk/toolbox/DEM/DEM_self_MI_a.m M /trunk/toolbox/DEM/FEP_MB_demo.m A /trunk/toolbox/DEM/spm_find_internal.m Upgrade of evidence accumulation routine for Giovanni ------------------------------------------------------------------------ r7177 | guillaume | 2017-09-28 10:52:56 +0100 (Thu, 28 Sep 2017) | 2 lines Changed paths: M /trunk/spm_mesh_render.m Enhancement: add viewpoint specification from command line. ------------------------------------------------------------------------ r7178 | karl | 2017-10-02 19:12:16 +0100 (Mon, 02 Oct 2017) | 1 line Changed paths: M /trunk/spm_reml.m correction to complexity term in spm_reml (removing KL cost for parameters) ------------------------------------------------------------------------ r7179 | karl | 2017-10-02 19:13:03 +0100 (Mon, 02 Oct 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_self_MI_a.m A /trunk/toolbox/DEM/FEP_self_entropy.m Development work on MI and self-entropy ------------------------------------------------------------------------ r7180 | john | 2017-10-03 11:26:43 +0100 (Tue, 03 Oct 2017) | 4 lines Changed paths: M /trunk/spm_preproc_write8.m M /trunk/toolbox/DARTEL/spm_dartel_norm_fun.m A couple of changes to keep the Liege people happy. * spm_preproc_write8.m: For missing data, use the values from the tissue priors (for Evelyn B). * spm_dartel_norm_fun.m: Allow a tissue probability map to be passed (for Chris P). ------------------------------------------------------------------------ r7181 | john | 2017-10-03 15:28:20 +0100 (Tue, 03 Oct 2017) | 3 lines Changed paths: M /trunk/spm_preproc_write8.m Removed a line that is not strictly needed. ------------------------------------------------------------------------ r7182 | christophe | 2017-10-06 11:37:31 +0100 (Fri, 06 Oct 2017) | 7 lines Changed paths: M /trunk/toolbox/DARTEL/spm_dartel_norm_fun.m M /trunk/toolbox/DARTEL/spm_dartel_template.m M /trunk/toolbox/DARTEL/spm_dartel_warp.m First attempt at defining an output folder for Darte processing. This should be back compatible, i.e. things should work as before without the 'output' field in the job structure. The option for the output folder selection are: - 'same' -> as before, i.e. same directory as the input data - 'allin' -> put everything in one specified directory - 'subjspec -> put results in the same subject specific sub-directory within a specified (new) directory. Dartel templates are saved in a separate sub-directory too. Other options could easily be considered. The sub-function setting the output path could appear as a new spm_* function for reuse with other functions. ------------------------------------------------------------------------ r7183 | guillaume | 2017-10-09 16:26:47 +0100 (Mon, 09 Oct 2017) | 2 lines Changed paths: A /trunk/spm_mesh_contour.m A /trunk/spm_orthviews/spm_ov_mesh.m A /trunk/tests/test_spm_mesh_contour.m New feature: mesh plugin for spm_orthviews. Thanks to Torben L and Christian G. ------------------------------------------------------------------------ r7184 | guillaume | 2017-10-10 11:12:38 +0100 (Tue, 10 Oct 2017) | 2 lines Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_convert.m M /trunk/toolbox/MEEGtools/spm_opm_denoise.m Doc: minor adjustments. ------------------------------------------------------------------------ r7185 | spm | 2017-10-11 11:10:04 +0100 (Wed, 11 Oct 2017) | 2 lines Changed paths: M /trunk/toolbox/dcm_meeg/spm_bgc_priors.m M /trunk/toolbox/dcm_meeg/spm_fx_bgc.m M /trunk/toolbox/dcm_meeg/spm_fx_mmc.m M /trunk/toolbox/dcm_meeg/spm_mmc_priors.m Doc: SVN properties. ------------------------------------------------------------------------ r7186 | guillaume | 2017-10-16 11:12:30 +0100 (Mon, 16 Oct 2017) | 2 lines Changed paths: M /trunk/spm_mesh_normals.m Bug fix: typo. ------------------------------------------------------------------------ r7187 | spm | 2017-10-16 17:46:19 +0100 (Mon, 16 Oct 2017) | 2 lines Changed paths: M /trunk/@file_array/private/mat2file.mexa64 M /trunk/external/bemcp/bem_Cii_cog.mexa64 M /trunk/external/bemcp/bem_Cii_cst.mexa64 M /trunk/external/bemcp/bem_Cii_lin.mexa64 M /trunk/external/bemcp/bem_Cij_cog.mexa64 M /trunk/external/bemcp/bem_Cij_cst.mexa64 M /trunk/external/bemcp/bem_Cij_lin.mexa64 M /trunk/external/bemcp/bem_Gi_cog.mexa64 M /trunk/external/bemcp/bem_Gi_vert.mexa64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexa64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexa64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexa64 M /trunk/external/fieldtrip/forward/private/routlm.mexa64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexa64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexa64 M /trunk/external/fieldtrip/private/lmoutr.mexa64 M /trunk/external/fieldtrip/private/ptriproj.mexa64 M /trunk/external/fieldtrip/private/routlm.mexa64 M /trunk/external/fieldtrip/private/solid_angle.mexa64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexa64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexa64 M /trunk/spm_diffeo.mexa64 M /trunk/spm_field.mexa64 M /trunk/spm_jsonread.mexa64 M /trunk/spm_mrf.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34.10. ------------------------------------------------------------------------ r7188 | spm | 2017-10-17 10:11:30 +0100 (Tue, 17 Oct 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m A /trunk/external/fieldtrip/connectivity/private/ctranspose3x3.m A /trunk/external/fieldtrip/connectivity/private/det3x3.m M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_progress.m M /trunk/external/fieldtrip/connectivity/private/inv2x2.m A /trunk/external/fieldtrip/connectivity/private/inv3x3.m M /trunk/external/fieldtrip/connectivity/private/istrue.m A /trunk/external/fieldtrip/connectivity/private/mtimes3x3.m A /trunk/external/fieldtrip/connectivity/private/sandwich3x3.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m A /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson3x3.m A /trunk/external/fieldtrip/connectivity/private/triplet_conditionalgranger.m M /trunk/external/fieldtrip/fieldtrip2spss.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/private/bounding_mesh.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_comp.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_raw.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/ft_progress.m M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/istrue.m M /trunk/external/fieldtrip/fileio/private/labelcmb2indx.m M /trunk/external/fieldtrip/fileio/private/match_str.m M /trunk/external/fieldtrip/fileio/private/mxDeserialize.m M /trunk/external/fieldtrip/fileio/private/mxSerialize.m M /trunk/external/fieldtrip/fileio/private/read_ns_eeg.m M /trunk/external/fieldtrip/fileio/private/write_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/write_ply.m M /trunk/external/fieldtrip/fileio/private/xml2struct.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/private/bounding_mesh.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_getopt.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/istrue.m M /trunk/external/fieldtrip/forward/private/match_str.m M /trunk/external/fieldtrip/forward/private/mesh2edge.m M /trunk/external/fieldtrip/forward/private/project_elec.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_artifact_clip.m M /trunk/external/fieldtrip/ft_artifact_ecg.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacemesh.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqanalysis_mvar.m M /trunk/external/fieldtrip/ft_freqbaseline.m D /trunk/external/fieldtrip/ft_freqcomparison.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m D /trunk/external/fieldtrip/ft_prepare_bemmodel.m D /trunk/external/fieldtrip/ft_prepare_concentricspheres.m D /trunk/external/fieldtrip/ft_prepare_localspheres.m D /trunk/external/fieldtrip/ft_prepare_singleshell.m M /trunk/external/fieldtrip/ft_qualitycheck.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_rejectartifact.m M /trunk/external/fieldtrip/ft_removetemplateartifact.m D /trunk/external/fieldtrip/ft_removetmsartifact.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_sourcewrite.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_statistics_stats.m A /trunk/external/fieldtrip/ft_steadystatesimulation.m M /trunk/external/fieldtrip/ft_stratify.m M /trunk/external/fieldtrip/ft_timelockbaseline.m M /trunk/external/fieldtrip/ft_timelockgrandaverage.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_topoplotTFR.m M /trunk/external/fieldtrip/inverse/private/bounding_mesh.m M /trunk/external/fieldtrip/inverse/private/ft_getopt.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/inverse/private/ft_progress.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/ft_plot_box.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_line.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_getopt.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_progress.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m M /trunk/external/fieldtrip/plotting/private/istrue.m M /trunk/external/fieldtrip/plotting/private/match_str.m M /trunk/external/fieldtrip/plotting/private/mesh2edge.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/private/filter_with_correction.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/istrue.m M /trunk/external/fieldtrip/preproc/private/plotfresp.m A /trunk/external/fieldtrip/private/bivariate_common.m M /trunk/external/fieldtrip/private/bounding_mesh.m A /trunk/external/fieldtrip/private/chanscale_common.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/findcluster.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/labelcmb2indx.m M /trunk/external/fieldtrip/private/mesh2edge.m M /trunk/external/fieldtrip/private/mxDeserialize.m M /trunk/external/fieldtrip/private/mxSerialize.m M /trunk/external/fieldtrip/private/project_elec.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/warp_dykstra2012.m M /trunk/external/fieldtrip/specest/private/filter_with_correction.m M /trunk/external/fieldtrip/specest/private/ft_getopt.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/istrue.m A /trunk/external/fieldtrip/src/det3x3.c A /trunk/external/fieldtrip/src/det3x3.m M /trunk/external/fieldtrip/src/inv2x2.m A /trunk/external/fieldtrip/src/inv3x3.c A /trunk/external/fieldtrip/src/inv3x3.m A /trunk/external/fieldtrip/src/mtimes3x3.c A /trunk/external/fieldtrip/src/mtimes3x3.m M /trunk/external/fieldtrip/src/mxDeserialize.m M /trunk/external/fieldtrip/src/mxSerialize.m A /trunk/external/fieldtrip/src/sandwich3x3.c A /trunk/external/fieldtrip/src/sandwich3x3.m M /trunk/external/fieldtrip/statfun/ft_statfun_actvsblT.m M /trunk/external/fieldtrip/statfun/ft_statfun_correlationT.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFmultivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesT.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesregrT.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesZcoh.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesregrT.m M /trunk/external/fieldtrip/statfun/private/istrue.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_example1.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_example2.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_realtime.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_trial.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_twoclass_classification.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_checkopt.m M /trunk/external/fieldtrip/utilities/ft_convert_coordsys.m D /trunk/external/fieldtrip/utilities/ft_convert_grad.m M /trunk/external/fieldtrip/utilities/ft_datatype_comp.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_documentationindex.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_getopt.m M /trunk/external/fieldtrip/utilities/ft_hash.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_progress.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_selectdata_new.m M /trunk/external/fieldtrip/utilities/ft_test.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/istrue.m M /trunk/external/fieldtrip/utilities/match_str.m M /trunk/external/fieldtrip/utilities/match_val.m M /trunk/external/fieldtrip/utilities/nearest.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_test_report.m M /trunk/external/fieldtrip/utilities/private/getaddress.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/labelcmb2indx.m M /trunk/external/fieldtrip/utilities/private/mxSerialize.m A /trunk/external/fieldtrip/utilities/private/printand.m A /trunk/external/fieldtrip/utilities/private/printor.m M /trunk/external/fieldtrip/utilities/private/project_elec.m update of external/fieldtrip to bc98d47 ------------------------------------------------------------------------ r7189 | guillaume | 2017-10-17 10:27:14 +0100 (Tue, 17 Oct 2017) | 1 line Changed paths: M /trunk/external/bemcp/bem_Cii_cog.mexmaci64 M /trunk/external/bemcp/bem_Cii_cst.mexmaci64 M /trunk/external/bemcp/bem_Cii_lin.mexmaci64 M /trunk/external/bemcp/bem_Cij_cog.mexmaci64 M /trunk/external/bemcp/bem_Cij_cst.mexmaci64 M /trunk/external/bemcp/bem_Cij_lin.mexmaci64 M /trunk/external/bemcp/bem_Gi_cog.mexmaci64 M /trunk/external/bemcp/bem_Gi_vert.mexmaci64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexmaci64 M /trunk/external/fieldtrip/forward/private/routlm.mexmaci64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/private/ptriproj.mexmaci64 M /trunk/external/fieldtrip/private/routlm.mexmaci64 M /trunk/external/fieldtrip/private/solid_angle.mexmaci64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexmaci64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexmaci64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_field.mexmaci64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_mrf.mexmaci64 Compilation with MATLAB R2017a, Clang 6.0 and OS X 10.9.5 ------------------------------------------------------------------------ r7190 | spm | 2017-10-17 12:22:43 +0100 (Tue, 17 Oct 2017) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 M /trunk/@file_array/private/mat2file.mexw64 M /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/external/bemcp/bem_Cii_cog.mexw64 M /trunk/external/bemcp/bem_Cii_cst.mexw64 M /trunk/external/bemcp/bem_Cii_lin.mexw64 M /trunk/external/bemcp/bem_Cij_cog.mexw64 M /trunk/external/bemcp/bem_Cij_cst.mexw64 M /trunk/external/bemcp/bem_Cij_lin.mexw64 M /trunk/external/bemcp/bem_Gi_cog.mexw64 M /trunk/external/bemcp/bem_Gi_vert.mexw64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/external/stats/nanmean.mexw64 M /trunk/external/fieldtrip/external/stats/nanstd.mexw64 M /trunk/external/fieldtrip/external/stats/nansum.mexw64 M /trunk/external/fieldtrip/external/stats/nanvar.mexw64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw64 M /trunk/external/fieldtrip/forward/private/plgndr.mexw64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw64 M /trunk/external/fieldtrip/forward/private/routlm.mexw64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw64 M /trunk/external/fieldtrip/private/lmoutr.mexw64 M /trunk/external/fieldtrip/private/plgndr.mexw64 M /trunk/external/fieldtrip/private/ptriproj.mexw64 M /trunk/external/fieldtrip/private/routlm.mexw64 M /trunk/external/fieldtrip/private/solid_angle.mexw64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/src/spm_jsonread.c M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw64 M /trunk/toolbox/FieldMap/pm_pad.mexw64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7191 | spm | 2017-10-17 16:11:29 +0100 (Tue, 17 Oct 2017) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/init.mexw32 M /trunk/@file_array/private/mat2file.mexw32 A /trunk/@gifti/private/zstream.mexw32 M /trunk/@xmltree/private/xml_findstr.mexw32 M /trunk/external/bemcp/bem_Cii_cog.mexw32 M /trunk/external/bemcp/bem_Cii_cst.mexw32 M /trunk/external/bemcp/bem_Cii_lin.mexw32 M /trunk/external/bemcp/bem_Cij_cog.mexw32 M /trunk/external/bemcp/bem_Cij_cst.mexw32 M /trunk/external/bemcp/bem_Cij_lin.mexw32 M /trunk/external/bemcp/bem_Gi_cog.mexw32 M /trunk/external/bemcp/bem_Gi_vert.mexw32 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/external/stats/nanmean.mexw32 M /trunk/external/fieldtrip/external/stats/nanstd.mexw32 M /trunk/external/fieldtrip/external/stats/nansum.mexw32 M /trunk/external/fieldtrip/external/stats/nanvar.mexw32 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw32 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw32 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw32 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw32 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw32 M /trunk/external/fieldtrip/forward/private/plgndr.mexw32 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw32 M /trunk/external/fieldtrip/forward/private/routlm.mexw32 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw32 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw32 M /trunk/external/fieldtrip/private/lmoutr.mexw32 M /trunk/external/fieldtrip/private/plgndr.mexw32 M /trunk/external/fieldtrip/private/ptriproj.mexw32 M /trunk/external/fieldtrip/private/routlm.mexw32 M /trunk/external/fieldtrip/private/solid_angle.mexw32 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw32 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw32 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_jsonread.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw32 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw32 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw32 M /trunk/toolbox/FieldMap/pm_pad.mexw32 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7192 | guillaume | 2017-10-18 15:59:01 +0100 (Wed, 18 Oct 2017) | 3 lines Changed paths: M /trunk/spm_reml_A.m M /trunk/spm_reml_sc.m M /trunk/spm_sp_reml.m Applying r7178 to all ReML routines: correction to complexity term in spm_reml (removing KL cost for parameters) ------------------------------------------------------------------------ r7193 | spm | 2017-10-25 12:27:40 +0100 (Wed, 25 Oct 2017) | 2 lines Changed paths: M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_determine_units.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_determine_units.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_determine_units.m M /trunk/external/fieldtrip/src/read_16bit.c M /trunk/external/fieldtrip/src/read_24bit.c M /trunk/external/fieldtrip/utilities/appendstruct.m Local changes in external/fieldtrip for compatibility with old MATLAB versions. ------------------------------------------------------------------------ r7194 | gareth | 2017-10-30 16:49:18 +0000 (Mon, 30 Oct 2017) | 1 line Changed paths: A /trunk/config/spm_cfg_eeg_opmsetup.m new module for OPM set up ------------------------------------------------------------------------ r7195 | gareth | 2017-10-30 16:49:44 +0000 (Mon, 30 Oct 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m added reference to new OPM setup module ------------------------------------------------------------------------ r7196 | adeel | 2017-10-31 12:07:52 +0000 (Tue, 31 Oct 2017) | 1 line Changed paths: M /trunk/spm_dcm_fmri_csd.m minor update ------------------------------------------------------------------------ r7197 | vladimir | 2017-11-01 12:04:57 +0000 (Wed, 01 Nov 2017) | 1 line Changed paths: M /trunk/@meeg/badsamples.m Bugfix, the method did not work correctly before for epoched files. ------------------------------------------------------------------------ r7198 | vladimir | 2017-11-01 12:47:36 +0000 (Wed, 01 Nov 2017) | 1 line Changed paths: M /trunk/@meeg/badsamples.m Fix for the fix ------------------------------------------------------------------------ r7199 | vladimir | 2017-11-01 16:42:12 +0000 (Wed, 01 Nov 2017) | 1 line Changed paths: M /trunk/@meeg/badsamples.m One more try ------------------------------------------------------------------------ r7200 | spm | 2017-11-06 13:09:39 +0000 (Mon, 06 Nov 2017) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_opmsetup.m Doc: SVN properties and comment style. ------------------------------------------------------------------------ r7201 | guillaume | 2017-11-08 11:13:25 +0000 (Wed, 08 Nov 2017) | 2 lines Changed paths: M /trunk/config/spm_cfg_dicom.m M /trunk/config/spm_run_dicom.m M /trunk/spm_dicom_convert.m A /trunk/spm_dicom_metadata.m New feature: export metadata as JSON during DICOM to NIfTI conversion. A contribution from Evelyne Balteau. ------------------------------------------------------------------------ r7202 | john | 2017-11-08 12:30:01 +0000 (Wed, 08 Nov 2017) | 4 lines Changed paths: M /trunk/spm_maff8.m M /trunk/spm_preproc_write8.m * spm_preproc_write8: Cleanup now done in situations where there may not be the default set of tissue priors. * spm_preproc_write8: Fixed a glitch in the specification of bounding boxes and voxel sizes. * spm_preproc_write8: Allow output to be written into a user specified directory. ------------------------------------------------------------------------ r7203 | guillaume | 2017-11-08 12:49:15 +0000 (Wed, 08 Nov 2017) | 2 lines Changed paths: M /trunk/spm_Ce.m Enhancement: fix the number of variance components in the "FAST" option to 18. A recommendation from N. Corbin. ------------------------------------------------------------------------ r7204 | guillaume | 2017-11-08 17:26:52 +0000 (Wed, 08 Nov 2017) | 2 lines Changed paths: M /trunk/spm_results_ui.m Enhancement: improved compatibility. ------------------------------------------------------------------------ r7205 | guillaume | 2017-11-09 11:29:59 +0000 (Thu, 09 Nov 2017) | 2 lines Changed paths: M /trunk/spm_platform.m Enhancement: deprecated 'drives' option in spm_platform removed. Use spm_select('ListDrives') instead. ------------------------------------------------------------------------ r7206 | gareth | 2017-11-09 16:27:30 +0000 (Thu, 09 Nov 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m A /trunk/config/spm_cfg_eeg_dipfit.m ------------------------------------------------------------------------ r7207 | gareth | 2017-11-09 16:30:05 +0000 (Thu, 09 Nov 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_opmsetup.m revised OPM setup scripts ------------------------------------------------------------------------ r7208 | vladimir | 2017-11-10 10:03:03 +0000 (Fri, 10 Nov 2017) | 1 line Changed paths: M /trunk/man/meeg/eeg_preprocessing.tex Typo fix (thanks to Tatiana) ------------------------------------------------------------------------ r7209 | guillaume | 2017-11-10 15:33:10 +0000 (Fri, 10 Nov 2017) | 2 lines Changed paths: M /trunk/@file_array/subsref.m Bug fix: display appropriate error message if file does not exist (instead of "Size vector must have at least 2 elements." in sub2ind). ------------------------------------------------------------------------ r7210 | guillaume | 2017-11-10 16:33:17 +0000 (Fri, 10 Nov 2017) | 4 lines Changed paths: M /trunk/config/spm_run_voi.m M /trunk/spm_fMRI_design.m Bug fixes: design matrices with multiple sessions in the absence of conditions. Many thanks to Pedro VH. (file dependencies have not yet been corrected in spm_cfg_voi.m) See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;3a3b3395.1711 ------------------------------------------------------------------------ r7211 | guillaume | 2017-11-13 10:38:15 +0000 (Mon, 13 Nov 2017) | 2 lines Changed paths: M /trunk/toolbox/FieldMap/FIL/pm_defaults_Trio_al_128.m M /trunk/toolbox/FieldMap/FIL/pm_defaults_Trio_al_64.m M /trunk/toolbox/FieldMap/FIL/pm_defaults_Trio_al_96.m Bug fix: update path to T1 templates for FIL FieldMap defaults. ------------------------------------------------------------------------ r7212 | spm | 2017-11-13 11:54:58 +0000 (Mon, 13 Nov 2017) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/utilities/ft_version.m Local changes in externa/fieldtrip for compatibility with old MATLAB versions. ------------------------------------------------------------------------ r7213 | guillaume | 2017-11-13 12:17:07 +0000 (Mon, 13 Nov 2017) | 2 lines Changed paths: M /trunk/man/manual.pdf Doc: new compilation of PDF manual. ------------------------------------------------------------------------ r7215 | john | 2017-11-14 15:57:55 +0000 (Tue, 14 Nov 2017) | 3 lines Changed paths: M /trunk/src/shoot_optimN.c * Another attempt to increase stability. Perhaps I shouldn't have attempted a complicated solver using single precision floating point. ------------------------------------------------------------------------ r7216 | guillaume | 2017-11-15 12:25:28 +0000 (Wed, 15 Nov 2017) | 3 lines Changed paths: M /trunk/config/spm_cfg_imcalc.m Enhancement: add extra output data types to ImCalc. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;e5e63f74.1711 ------------------------------------------------------------------------ r7217 | vladimir | 2017-11-15 14:33:10 +0000 (Wed, 15 Nov 2017) | 1 line Changed paths: M /trunk/spm_eeg_review_callbacks.m Sped up the extremely slow implementation of MEEG updating in the reviewing tool. ------------------------------------------------------------------------ r7218 | guillaume | 2017-11-16 10:03:14 +0000 (Thu, 16 Nov 2017) | 1 line Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.4. ------------------------------------------------------------------------ r7220 | vladimir | 2017-11-16 11:07:46 +0000 (Thu, 16 Nov 2017) | 1 line Changed paths: M /trunk/spm_eeg_review_callbacks.m Fixed a bug related to manually adding events in the reviewing tool. ------------------------------------------------------------------------ r7221 | vladimir | 2017-11-16 14:25:37 +0000 (Thu, 16 Nov 2017) | 1 line Changed paths: M /trunk/spm_eeg_plotScalpData.m M /trunk/spm_eeg_review.m M /trunk/spm_eeg_review_callbacks.m M /trunk/spm_eeg_review_switchDisplay.m Improvements to the reviewing tool. Allowing comparisons between conditions and scalp maps for spectra. ------------------------------------------------------------------------ r7222 | vladimir | 2017-11-16 15:39:57 +0000 (Thu, 16 Nov 2017) | 1 line Changed paths: M /trunk/spm_eeg_review_callbacks.m Fix for yesterday's fix for the specific case of a table with one row. Hopefully not too many people will run into that in the web update. ------------------------------------------------------------------------ r7223 | karl | 2017-11-18 18:00:01 +0000 (Sat, 18 Nov 2017) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/DEM_self_entropy.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m DEM_self_entropy.m added ------------------------------------------------------------------------ r7224 | karl | 2017-11-18 18:10:09 +0000 (Sat, 18 Nov 2017) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/FEP_MB_demo.m M /trunk/toolbox/DEM/FEP_physics.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_soup.m Embellishment to maze demo (path and place cells) ------------------------------------------------------------------------ r7225 | karl | 2017-11-20 18:34:17 +0000 (Mon, 20 Nov 2017) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_csd_mtf.m bug fix in spm_csd_mtf.m (squeeze operator replaced with shiftdim to suppress leading dimension) ------------------------------------------------------------------------ r7226 | peter | 2017-11-20 18:38:01 +0000 (Mon, 20 Nov 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m A /trunk/tests/test_spm_cfg_dcm_fmri.m Added batch to duplicate DCM (for fMRI) .mat files across subjects. ------------------------------------------------------------------------ r7227 | peter | 2017-11-20 18:53:26 +0000 (Mon, 20 Nov 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m Minor fix to spm_cfg_dcm_fmri.m ------------------------------------------------------------------------ r7228 | peter | 2017-11-21 12:17:03 +0000 (Tue, 21 Nov 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/spm_dcm_U.m M /trunk/spm_dcm_specify_ui.m M /trunk/tests/test_spm_cfg_dcm_fmri.m Implemented DCM.U.idx in DCM for fMRI to store the original SPM condition and regressor indices. Simplifies group model specification. ------------------------------------------------------------------------ r7230 | spm | 2017-11-24 11:36:56 +0000 (Fri, 24 Nov 2017) | 1 line Changed paths: M /trunk/external/mne/fiff_define_constants.m Missing semicolon in MNE. ------------------------------------------------------------------------ r7231 | gareth | 2017-11-24 13:47:09 +0000 (Fri, 24 Nov 2017) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/eb_read_lvm.m M /trunk/toolbox/MEEGtools/spm_opm_denoise.m update opm code ------------------------------------------------------------------------ r7232 | karl | 2017-11-26 21:17:04 +0000 (Sun, 26 Nov 2017) | 1 line Changed paths: M /trunk/spm_dot.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor modifications to MDP schemes ------------------------------------------------------------------------ r7234 | john | 2017-11-30 11:33:06 +0000 (Thu, 30 Nov 2017) | 5 lines Changed paths: M /trunk/man/dartelguide/dartelguide.tex M /trunk/man/manual.pdf M /trunk/spm_preproc8.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m * dartelguide.tex - removed part that refers to the old spatial normalisation. * tbx_cfg_longitudinal.m - clarified the documentation relating to how noise is estimated from air in the background. This is because the following paper used skull-stripped images, and found that the SPM approach was over-regularised due to estimating the noise from the brain, rather than from air: Guizard N, Fonov VS, García-Lorenzo D, Nakamura K, Aubert-Broche B, Collins DL. Spatio-Temporal Regularization for Longitudinal Registration to Subject-Specific 3d Template. PloS one. 2015 Aug 24;10(8):e0133352. * spm_preproc8.m - coarse-to-fine registration is now based on changing the penalty from the bending energy part, rather than the overall penalty. Tidied up the code slightly. ------------------------------------------------------------------------ r7235 | gareth | 2017-12-05 10:11:14 +0000 (Tue, 05 Dec 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_dipfit.m improved graphics on fit output ------------------------------------------------------------------------ r7236 | tim | 2017-12-11 14:33:29 +0000 (Mon, 11 Dec 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_opmsetup.m allow filter band to be row or column vector ------------------------------------------------------------------------ r7237 | gareth | 2017-12-11 19:37:08 +0000 (Mon, 11 Dec 2017) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_dipfit.m updated output of dipfit routine ------------------------------------------------------------------------ r7238 | guillaume | 2017-12-13 12:17:52 +0000 (Wed, 13 Dec 2017) | 2 lines Changed paths: M /trunk/spm_dcm_delay.m Doc: update help text. ------------------------------------------------------------------------ r7239 | guillaume | 2017-12-15 17:14:33 +0000 (Fri, 15 Dec 2017) | 3 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/ply_read.m M /trunk/spm_mesh_contour.m M /trunk/spm_mesh_utils.mexa64 M /trunk/src/spm_mesh_utils.c Enhancement: rewrote spm_mesh_contour to implement marching squares. New feature: read PLY files. ------------------------------------------------------------------------ r7240 | guillaume | 2017-12-19 12:06:59 +0000 (Tue, 19 Dec 2017) | 2 lines Changed paths: M /trunk/spm_mesh_contour.m M /trunk/spm_mesh_utils.m Enhancement: compute contour along any plane. ------------------------------------------------------------------------ r7241 | guillaume | 2018-01-03 17:45:42 +0000 (Wed, 03 Jan 2018) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/LICENCE.txt M /trunk/README.txt M /trunk/help/index.html M /trunk/spm_Menu.fig Doc: mention 2018. ------------------------------------------------------------------------ r7242 | guillaume | 2018-01-04 15:59:29 +0000 (Thu, 04 Jan 2018) | 2 lines Changed paths: M /trunk/spm_BIDS.m Bug fix: fieldmaps' metadata can be higher up in the hierarchy. ------------------------------------------------------------------------ r7243 | karl | 2018-01-04 20:24:29 +0000 (Thu, 04 Jan 2018) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_HB_and_LE.m D /trunk/toolbox/DEM/DEM_I3_and_TS.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m D /trunk/toolbox/DEM/DEM_self_MI_a.m D /trunk/toolbox/DEM/DEM_self_MI_b.m D /trunk/toolbox/DEM/DEM_self_MI_c.m M /trunk/toolbox/DEM/DEM_self_entropy.m M /trunk/toolbox/DEM/FEP_self_entropy.m Revision to physics demos in Dem Toolbox ------------------------------------------------------------------------ r7244 | guillaume | 2018-01-05 17:46:59 +0000 (Fri, 05 Jan 2018) | 2 lines Changed paths: M /trunk/spm_dcm_display.m Bug fix: fix background image for graph display. ------------------------------------------------------------------------ r7245 | guillaume | 2018-01-15 11:03:54 +0000 (Mon, 15 Jan 2018) | 2 lines Changed paths: M /trunk/spm_update.m Enhancement: display revision number. A request from Paul M. ------------------------------------------------------------------------ r7246 | gareth | 2018-01-16 12:55:14 +0000 (Tue, 16 Jan 2018) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_denoise.m only denoises using global signal from meg channels ------------------------------------------------------------------------ r7247 | peter | 2018-01-23 17:18:51 +0000 (Tue, 23 Jan 2018) | 1 line Changed paths: A /trunk/spm_dcm_compare_data.m Added function to compare datasets using DCM. Described in Zeidman, Kazan et al. 2018. ------------------------------------------------------------------------ r7248 | karl | 2018-01-28 21:36:54 +0000 (Sun, 28 Jan 2018) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_demo_fMRI_HMM.m M /trunk/toolbox/Neural_Models/Neural_demo.fig M /trunk/toolbox/Neural_Models/Neural_demo.m Hidden Markov models for fMRI demo initiated ------------------------------------------------------------------------ r7249 | guillaume | 2018-01-29 12:02:33 +0000 (Mon, 29 Jan 2018) | 2 lines Changed paths: M /trunk/config/spm_run_norm.m Bug fix: file prefix was hardcoded for dependencies. Thanks to Yoni A. ------------------------------------------------------------------------ r7250 | guillaume | 2018-01-31 12:12:39 +0000 (Wed, 31 Jan 2018) | 5 lines Changed paths: M /trunk/src/spm_mapping.c Bug fix: numeric overflow when mapping large 3d array. A = rand(642,882,882,'double'); spm_slice_vol(A,spm_matrix([0 0 474]),[642,882],0); spm_slice_vol(A,spm_matrix([0 0 476]),[642,882],0); ------------------------------------------------------------------------ r7251 | guillaume | 2018-01-31 12:44:05 +0000 (Wed, 31 Jan 2018) | 2 lines Changed paths: M /trunk/src/spm_conv_vol.c M /trunk/src/spm_mapping.c Bug fix: Applying same fix than r7250 for data stored in V.dat. ------------------------------------------------------------------------ r7252 | john | 2018-01-31 15:56:56 +0000 (Wed, 31 Jan 2018) | 5 lines Changed paths: M /trunk/spm_powell.m M /trunk/src/shoot_regularisers.c M /trunk/toolbox/Shoot/spm_GPclass.m M /trunk/toolbox/Shoot/spm_shoot_blur.m * spm_powell.m: Included an additional test for whether to stop. * src/shoot_regularisers.c: Refactored. Lines of code have been greatly reduced, at the expense of maybe running ever so slightly slower. Not essential to recompile. * toolbox/Shoot/spm_shoot_blur.m: Minor bug fix. * toolbox/Shoot/spm_GPclass.m: Added a bit more regularisation to prevent (logs of) parameter estimates from continuing to go more and more negative when the parameters themselves should be zero. ------------------------------------------------------------------------ r7253 | vladimir | 2018-02-04 17:20:57 +0000 (Sun, 04 Feb 2018) | 1 line Changed paths: M /trunk/@meeg/selectchannels.m Fix for the case when a channel name is the same as one of the standard types (thanks to Gabor). ------------------------------------------------------------------------ r7254 | guillaume | 2018-02-05 17:51:37 +0000 (Mon, 05 Feb 2018) | 2 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/stl_read.m New feature: import STL-formatted files. ------------------------------------------------------------------------ r7255 | vladimir | 2018-02-07 22:06:07 +0000 (Wed, 07 Feb 2018) | 1 line Changed paths: M /trunk/spm_eeg_lgainmat.m Save the changes to the forward field (thanks to Yekaterina) ------------------------------------------------------------------------ r7256 | karl | 2018-02-11 14:45:00 +0000 (Sun, 11 Feb 2018) | 2 lines Changed paths: M /trunk/spm_axis.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd.m A /trunk/toolbox/dcm_meeg/spm_dcm_virtual_electrodes.m M /trunk/toolbox/dcm_meeg/spm_lx_erp.m M /trunk/toolbox/spectral/spm_dtf2gew.m Virtual electrode facility added for DCM for CSD (and minor bug fix to DTF to Granger conversion routine) spm_axis will now ignore zero data ------------------------------------------------------------------------ r7257 | guillaume | 2018-02-12 15:51:12 +0000 (Mon, 12 Feb 2018) | 2 lines Changed paths: M /trunk/src/spm_jsonread.c Bug fix: prevent segfault for invalid JSON files such as {"a","b"} ------------------------------------------------------------------------ r7258 | guillaume | 2018-02-14 13:09:46 +0000 (Wed, 14 Feb 2018) | 2 lines Changed paths: M /trunk/spm_ncTcdf.m A /trunk/tests/test_spm_ncTcdf.m Enhancement: implement CDF of non-central t-distribution using recursion (see algorithm AS 243). ------------------------------------------------------------------------ r7259 | guillaume | 2018-02-15 10:16:32 +0000 (Thu, 15 Feb 2018) | 2 lines Changed paths: A /trunk/spm_ncFcdf.m A /trunk/tests/test_spm_ncFcdf.m New feature: CDF of non-central F-distribution. ------------------------------------------------------------------------ r7260 | guillaume | 2018-02-19 10:55:53 +0000 (Mon, 19 Feb 2018) | 2 lines Changed paths: M /trunk/spm_ncTcdf.m A /trunk/spm_ncTpdf.m A /trunk/tests/test_spm_ncTpdf.m New feature: PDF of non-central t-distribution ------------------------------------------------------------------------ r7261 | peter | 2018-02-19 11:02:42 +0000 (Mon, 19 Feb 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m Fix to DCM estimation batch to always overwrite existing DCMs, in addition to creating a GCM file. ------------------------------------------------------------------------ r7262 | peter | 2018-02-19 17:55:27 +0000 (Mon, 19 Feb 2018) | 1 line Changed paths: M /trunk/spm_dcm_bmr.m M /trunk/tests/test_spm_dcm_bmr.m Minor bug fix to spm_dcm_bmr.m for when there are only 2 outputs ------------------------------------------------------------------------ r7263 | guillaume | 2018-02-21 13:30:16 +0000 (Wed, 21 Feb 2018) | 2 lines Changed paths: M /trunk/spm_ncFcdf.m A /trunk/spm_ncFpdf.m M /trunk/spm_ncTcdf.m M /trunk/spm_ncTpdf.m A /trunk/tests/test_spm_ncFpdf.m New feature: PDF of non-central F-distribution ------------------------------------------------------------------------ r7264 | peter | 2018-02-22 14:43:47 +0000 (Thu, 22 Feb 2018) | 1 line Changed paths: M /trunk/spm_dcm_load.m M /trunk/spm_dcm_specify.m M /trunk/spm_dcm_specify_ui.m A /trunk/tests/end2end_attention.m A /trunk/tests/test_spm_dcm_specify.m Updated DCM for fMRI specification GUI (spm_dcm_specify.m) to enable programmatic specification of models. Added end-to-end test for Attention dataset. ------------------------------------------------------------------------ r7265 | guillaume | 2018-02-22 15:34:59 +0000 (Thu, 22 Feb 2018) | 2 lines Changed paths: M /trunk/spm_get_dataset.m Enhancement: add spDCM dataset. ------------------------------------------------------------------------ r7266 | peter | 2018-02-23 17:28:48 +0000 (Fri, 23 Feb 2018) | 1 line Changed paths: A /trunk/tests/end2end_restingfMRI.m Added end-to-end unit test for resting state fMRI ------------------------------------------------------------------------ r7267 | peter | 2018-02-27 10:13:43 +0000 (Tue, 27 Feb 2018) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m M /trunk/spm_dcm_peb_fit.m Fixed bug which caused spm_dcm_peb_fit to sometimes crash with multiple precision components ------------------------------------------------------------------------ r7268 | guillaume | 2018-02-27 16:48:13 +0000 (Tue, 27 Feb 2018) | 2 lines Changed paths: M /trunk/config/spm_cfg_results.m M /trunk/config/spm_run_results.m New feature: Montage option in Results Report. ------------------------------------------------------------------------ r7269 | vladimir | 2018-02-28 15:53:43 +0000 (Wed, 28 Feb 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/ft_senstype.m M /trunk/spm_eeg_review_callbacks.m Minor fixes for EEGLAB data handling. ------------------------------------------------------------------------ r7270 | karl | 2018-03-04 13:08:10 +0000 (Sun, 04 Mar 2018) | 1 line Changed paths: M /trunk/spm_csd_fmri_gu.m M /trunk/spm_csd_fmri_mtf.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_csd_data.m M /trunk/spm_dcm_fmri_priors.m M /trunk/spm_fs_fmri_csd.m M /trunk/spm_fx_fmri.m M /trunk/toolbox/DEM/DEM_demo_induced_fMRI.m M /trunk/toolbox/DEM/DEM_demo_large_fMRI.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m Fairly major revision to DCM for CST (fMRI). The priors have been simplified, a more principled likelihood model has been implemented and the inversion scheme can now handle cell arrays of multisession responses (as a hidden feature). Finally, the prediction of complex prospector is now consilient with the autoregressive estimation. ------------------------------------------------------------------------ r7271 | karl | 2018-03-04 13:11:54 +0000 (Sun, 04 Mar 2018) | 1 line Changed paths: M /trunk/spm_dcm_average.m M /trunk/spm_dcm_peb.m M /trunk/spm_detrend.m M /trunk/spm_find_pC.m M /trunk/spm_nlsi_GN.m Relatively minor changes to auxiliary teams. spm_dcm_peb now has a few more checks for stable convergence. Furthermore, if specified with beta equals zero, the sample between subject (i.e. first level) covariance will be used to form precision components – this can account for differences in variance over different sorts of parameters. ------------------------------------------------------------------------ r7272 | karl | 2018-03-04 13:12:31 +0000 (Sun, 04 Mar 2018) | 1 line Changed paths: A /trunk/spm_dcm_HMM.m A /trunk/spm_dcm_HMM_plot.m M /trunk/toolbox/DEM/DEM_demo_fMRI_HMM.m Provisional completion of demos and routines for hidden Markov modelling of fMRI data ------------------------------------------------------------------------ r7273 | karl | 2018-03-04 13:15:34 +0000 (Sun, 04 Mar 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m fairly major change to spm_MDP_VB_X.m so that it can handle outcomes in the form of log likelihoods. Furthermore, complexity term is due to MDP model parameters are now computed more comprehensively to enable model comparison. ------------------------------------------------------------------------ r7274 | karl | 2018-03-04 13:18:09 +0000 (Sun, 04 Mar 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_connectivity_fMRI.m Spelling mistake corrected ------------------------------------------------------------------------ r7275 | karl | 2018-03-07 22:36:34 +0000 (Wed, 07 Mar 2018) | 2 lines Changed paths: M /trunk/spm_dcm_delay.m M /trunk/spm_dcm_fmri_csd.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd.m A /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_2014.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m M /trunk/toolbox/dcm_meeg/spm_ssr_priors.m feature selection function remove from DCM for CSD (EEG MEG). Replaced with a normalised precision as computed by spm_dcm_csd_Q.m plus a few minor revisions to DCM functions. ------------------------------------------------------------------------ r7276 | guillaume | 2018-03-08 15:31:24 +0000 (Thu, 08 Mar 2018) | 3 lines Changed paths: M /trunk/man/ppi/ppi.tex Doc: fix documentation following changes in contrast manager batch interface. See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;80db26b1.1803 ------------------------------------------------------------------------ r7277 | peter | 2018-03-09 10:03:57 +0000 (Fri, 09 Mar 2018) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Fix to spm_dcm_peb_review.m for the C-matrix in DCM for fMRI ------------------------------------------------------------------------ r7278 | john | 2018-03-09 10:35:55 +0000 (Fri, 09 Mar 2018) | 6 lines Changed paths: M /trunk/toolbox/Shoot/covLin.m M /trunk/toolbox/Shoot/spm_GPclass.m M /trunk/toolbox/Shoot/spm_shoot_scalmom.m * spm_shoot_scalmom.m: Better handles missing data. * covLin.m: Minor changes * spm_GPclass.m: Tidied up indentation. Improved computation of Ncdf. Added ability to compute Hessians and marginal likelihoods for user-specified hyperparameters. ------------------------------------------------------------------------ r7279 | karl | 2018-03-10 21:22:44 +0000 (Sat, 10 Mar 2018) | 1 line Changed paths: M /trunk/man/example_scripts/DCM_example_MMC_BGC.m M /trunk/spm_csd_fmri_mtf.m M /trunk/spm_dcm_HMM.m M /trunk/spm_dcm_delay.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_nlsi_GN.m M /trunk/tests/ROBOT_DCM_fMRI.m M /trunk/toolbox/dcm_meeg/spm_cmc_priors.m M /trunk/toolbox/dcm_meeg/spm_csd_mtf.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_2014.m M /trunk/toolbox/dcm_meeg/spm_fx_erp.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m M /trunk/toolbox/dcm_meeg/spm_gen_Q.m M /trunk/toolbox/dcm_meeg/spm_ssr_priors.m Minor adjustments to DCM for CSD. Key revisions include addition of a filter to the generative model – and intrinsic delays are now optimised. For fMRI, the order of the MAR characterisation has been increased from 4 to 8 (with corresponding transformation in the generative model) ------------------------------------------------------------------------ r7280 | guillaume | 2018-03-21 12:07:11 +0000 (Wed, 21 Mar 2018) | 2 lines Changed paths: M /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m Enhancement: faster implementation of precision of cross spectral density. ------------------------------------------------------------------------ r7281 | vladimir | 2018-03-23 13:03:52 +0000 (Fri, 23 Mar 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_headmodel.m Updated the support for BIDS following changes in the standard ------------------------------------------------------------------------ r7282 | karl | 2018-03-25 13:39:27 +0100 (Sun, 25 Mar 2018) | 1 line Changed paths: A /trunk/spm_nlsi_AI.m A /trunk/toolbox/DEM/DEMO_AI_NLSI.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m active optimisation demo started ------------------------------------------------------------------------ r7283 | thomas | 2018-03-28 14:23:49 +0100 (Wed, 28 Mar 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m minor corrections to spm_MDP_VB_X.m Line 744, transposed MDP.factor, Lines 857-876, added loop over f and g, Lines 902-905, added 'try' ------------------------------------------------------------------------ r7284 | guillaume | 2018-03-29 10:42:26 +0100 (Thu, 29 Mar 2018) | 2 lines Changed paths: M /trunk/bin/spm12-octave Enhancement: Use the same exit mechanism than spm12-matlab. ------------------------------------------------------------------------ r7285 | thomas | 2018-03-29 11:38:16 +0100 (Thu, 29 Mar 2018) | 1 line Changed paths: A /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m Added MDP_DEM_Oculomotion_demo.m demo script to DEM toolbox ------------------------------------------------------------------------ r7286 | john | 2018-04-04 12:24:36 +0100 (Wed, 04 Apr 2018) | 2 lines Changed paths: M /trunk/spm_diffeo.m * Added more documentation. ------------------------------------------------------------------------ r7287 | karl | 2018-04-07 14:15:09 +0100 (Sat, 07 Apr 2018) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/spm_nlsi_AI.m M /trunk/toolbox/DEM/DEMO_AI_NLSI.m development of AI optimisation ------------------------------------------------------------------------ r7288 | karl | 2018-04-07 14:18:54 +0100 (Sat, 07 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m extra entropy replaced until further checking in MDP scheme ------------------------------------------------------------------------ r7289 | thomas | 2018-04-09 17:50:40 +0100 (Mon, 09 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Added Decisions to movements demo to DEM gui ------------------------------------------------------------------------ r7290 | guillaume | 2018-04-10 17:43:01 +0100 (Tue, 10 Apr 2018) | 2 lines Changed paths: M /trunk/config/spm_cfg_cat.m M /trunk/spm_file_merge.m Enhancement: add option to store TR in NIfTI 4D headers. Thanks to Tibor A. ------------------------------------------------------------------------ r7291 | guillaume | 2018-04-12 09:43:08 +0100 (Thu, 12 Apr 2018) | 2 lines Changed paths: M /trunk/@gifti/subsref.m Bug fix: If faces are accessed through a file_array (ExternalFileBinary encoding of a mesh geometry), the entire data have to be loaded in memory before 1 is added to them. ------------------------------------------------------------------------ r7292 | peter | 2018-04-12 11:24:55 +0100 (Thu, 12 Apr 2018) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m Added warning to spm_dcm_peb_review.m that free-energy based thresholding is only applied to commonalities and the first group difference, when manually specifying reduced models. ------------------------------------------------------------------------ r7293 | thomas | 2018-04-16 16:22:15 +0100 (Mon, 16 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Added Dirichlet parameters for policy learning (mdp.e) ------------------------------------------------------------------------ r7294 | thomas | 2018-04-16 16:48:57 +0100 (Mon, 16 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m added Dirichlet priors for MDP.c (prior preferences) ------------------------------------------------------------------------ r7295 | guillaume | 2018-04-18 11:32:20 +0100 (Wed, 18 Apr 2018) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_util.m M /trunk/spm.m Enhancement: temporary workarounds for bugs #32088 and #53468 in Octave. ------------------------------------------------------------------------ r7296 | guillaume | 2018-04-18 11:36:49 +0100 (Wed, 18 Apr 2018) | 3 lines Changed paths: M /trunk/spm_dcm_fmri_csd_results.m M /trunk/spm_dcm_review.m M /trunk/spm_defaults.m M /trunk/spm_eeg_inv_checkforward.m M /trunk/spm_figure.m Enhancement: zbuffer renderer is deprecated since R2014b. Switching to opengl as default. If problems are reported, we might have to add alternative defaults for old MATLAB versions or Mac. ------------------------------------------------------------------------ r7297 | thomas | 2018-04-19 13:32:16 +0100 (Thu, 19 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Correction to accumulation of c Dirichlet parameters ------------------------------------------------------------------------ r7298 | guillaume | 2018-04-20 11:50:51 +0100 (Fri, 20 Apr 2018) | 2 lines Changed paths: M /trunk/spm_figure.m Enhancement: Another temporary workaraound for Octave bug #49734. ------------------------------------------------------------------------ r7299 | tibor | 2018-04-23 14:55:14 +0100 (Mon, 23 Apr 2018) | 1 line Changed paths: M /trunk/config/spm_run_tissue_volumes.m UPDATE:spm_run_tissue_volumes ------------------------------------------------------------------------ r7300 | karl | 2018-04-25 22:14:07 +0100 (Wed, 25 Apr 2018) | 1 line Changed paths: M /trunk/spm_cross.m M /trunk/spm_dot.m A /trunk/spm_psi.m A /trunk/spm_sdot.m M /trunk/spm_softmax.m A /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_G.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_check.m Fairly major revisions to auxiliary routines and MDP scheme to handle high dimensional arrays more efficiently. 20 questions demo added (for further development) ------------------------------------------------------------------------ r7301 | karl | 2018-04-25 22:19:50 +0100 (Wed, 25 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m ------------------------------------------------------------------------ r7302 | thomas | 2018-04-26 13:53:19 +0100 (Thu, 26 Apr 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m changed flip.m for fliplr.m in MDP_DEM_Oculomotion_demo.m ------------------------------------------------------------------------ r7303 | karl | 2018-04-28 17:00:22 +0100 (Sat, 28 Apr 2018) | 1 line Changed paths: M /trunk/spm_cva.m M /trunk/spm_nlsi_AI.m A /trunk/toolbox/DEM/DEMO_CVA_RSA.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Addition of a demo comparing CVA and representational similarity analysis ------------------------------------------------------------------------ r7304 | guillaume | 2018-05-02 13:09:35 +0100 (Wed, 02 May 2018) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_inv_headmodel.m Bug fix: according to BIDS specs, AnatomicalMRICoordinateSystem and AnatomicalMRICoordinateUnits are not defined here - units are always voxels. ------------------------------------------------------------------------ r7305 | karl | 2018-05-07 14:35:06 +0100 (Mon, 07 May 2018) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/spm_plot_ci.m M /trunk/spm_reml_sc.m M /trunk/toolbox/DEM/DEMO_CVA_RSA.m Upgrade to DEM/DEMO_CVA_RSA.m demonstration. ------------------------------------------------------------------------ r7306 | karl | 2018-05-07 14:42:02 +0100 (Mon, 07 May 2018) | 1 line Changed paths: M /trunk/spm_softmax.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/spm_MDP_G.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m M /trunk/toolbox/DEM/spm_MDP_check.m Further development work on questions demo and further optimisation work for the NDP schemes (and showing their results) ------------------------------------------------------------------------ r7307 | karl | 2018-05-08 10:44:04 +0100 (Tue, 08 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m Update to language demo – and extra entropy replaced in spm_MDP_VB_X.m ------------------------------------------------------------------------ r7308 | karl | 2018-05-10 09:16:07 +0100 (Thu, 10 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Development work on language demo ------------------------------------------------------------------------ r7309 | vladimir | 2018-05-10 10:13:02 +0100 (Thu, 10 May 2018) | 1 line Changed paths: M /trunk/spm_eeg_convert.m Removed the old Biosemi event hack as Jason complained it affects his data. ------------------------------------------------------------------------ r7310 | karl | 2018-05-11 20:24:09 +0100 (Fri, 11 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m A /trunk/toolbox/DEM/DEMO_niche_construction.m M /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor debugging of MDP schemes– and addition of niche construction demo ------------------------------------------------------------------------ r7311 | karl | 2018-05-13 22:15:07 +0100 (Sun, 13 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_check.m update to MDP routines - now handles multiagent games (specified via struct array) ------------------------------------------------------------------------ r7312 | guillaume | 2018-05-16 12:22:53 +0100 (Wed, 16 May 2018) | 2 lines Changed paths: M /trunk/spm_file_template.m Enhancement: Initialise properties as cell arrays for Octave compatibility. ------------------------------------------------------------------------ r7313 | guillaume | 2018-05-17 14:25:51 +0100 (Thu, 17 May 2018) | 2 lines Changed paths: M /trunk/src/spm_gamrnd.c A /trunk/tests/test_spm_gamrnd.m Enhancement: Make output array dimension specification compatible with gamrnd. ------------------------------------------------------------------------ r7314 | karl | 2018-05-19 11:13:25 +0100 (Sat, 19 May 2018) | 1 line Changed paths: M /trunk/spm_dot.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Development work on MDP (multiagent) schemes ------------------------------------------------------------------------ r7315 | peter | 2018-05-20 11:42:51 +0100 (Sun, 20 May 2018) | 1 line Changed paths: A /trunk/spm_dcm_bdc.m (from /trunk/spm_dcm_compare_data.m:7314) D /trunk/spm_dcm_compare_data.m Renamed spm_dcm_compare_data.m to spm_dcm_bdc.m (Bayesian data comparison) ------------------------------------------------------------------------ r7316 | bernadette | 2018-05-22 12:21:34 +0100 (Tue, 22 May 2018) | 1 line Changed paths: M /trunk/spm_eeg_cfc.m bug fixes for continuous data ------------------------------------------------------------------------ r7317 | karl | 2018-05-25 13:12:22 +0100 (Fri, 25 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Development work on MDP demos ------------------------------------------------------------------------ r7318 | karl | 2018-05-26 16:46:53 +0100 (Sat, 26 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Bayesian surprise about initial conditions added to spm_MDP_VB_X.m ------------------------------------------------------------------------ r7319 | karl | 2018-05-29 10:33:01 +0100 (Tue, 29 May 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m M /trunk/toolbox/DEM/spm_MDP_check.m Development work on MDP schemes ------------------------------------------------------------------------ r7320 | john | 2018-05-29 11:19:49 +0100 (Tue, 29 May 2018) | 9 lines Changed paths: M /trunk/spm_coreg.m M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_header.m M /trunk/spm_dicom_headers.m M /trunk/spm_preproc8.m M /trunk/spm_summarise.m * spm_preproc8.m: Cosmetic changes * spm_coreg.m: A very minor cosmetic change (can't remember why I changed it now) * spm_summarise.m: Commented out the call to spm_check_orientations so that brain volumes can be computed from segmented scans. This may break other things, which could be fixed later. * spm_dicom_header.m, spm_dicom_headers.m & spm_dicom_convert.m: Major refactoring and changing of variable names to try to make it easier to read. ------------------------------------------------------------------------ r7321 | mikael | 2018-05-29 17:38:58 +0100 (Tue, 29 May 2018) | 1 line Changed paths: M /trunk/spm_dicom_convert.m Added variable slice-thickness reconstruction to WriteVolume. ------------------------------------------------------------------------ r7322 | karl | 2018-05-31 10:47:15 +0100 (Thu, 31 May 2018) | 1 line Changed paths: M /trunk/spm_DEM_M_set.m M /trunk/spm_DEM_generate.m M /trunk/spm_DEM_qP.m M /trunk/spm_DEM_qU.m A /trunk/toolbox/DEM/DEM_coupled_oscillators.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_lorenz_LAP.m Coupled oscillator demo added to Dem toolbox/DEM/DEM_demo.m ------------------------------------------------------------------------ r7323 | guillaume | 2018-05-31 17:42:43 +0100 (Thu, 31 May 2018) | 2 lines Changed paths: M /trunk/spm_BIDS.m M /trunk/spm_load.m Enhancement: implement BIDS Extension Proposal 6 (EEG). ------------------------------------------------------------------------ r7324 | karl | 2018-06-02 13:12:20 +0100 (Sat, 02 Jun 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_coupled_oscillators.m M /trunk/toolbox/DEM/DEM_demo.fig Demo for coupled oscillator inversion added to toolbox/DEM/DEM_demo.fig ------------------------------------------------------------------------ r7325 | karl | 2018-06-03 22:52:21 +0100 (Sun, 03 Jun 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m Development work on the language DEMO_MDP_questions.m ------------------------------------------------------------------------ r7326 | karl | 2018-06-06 13:16:40 +0100 (Wed, 06 Jun 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_log_evidence.m A /trunk/toolbox/DEM/spm_gamma_log_evidence.m Bayesian model reduction routine for gamma distributions ------------------------------------------------------------------------ r7327 | peter | 2018-06-07 14:30:01 +0100 (Thu, 07 Jun 2018) | 1 line Changed paths: A /trunk/tests/test_spm_dcm_peb_bmc.m Added unit test for spm_dcm_peb_bmc.m ------------------------------------------------------------------------ r7328 | guillaume | 2018-06-08 17:30:42 +0100 (Fri, 08 Jun 2018) | 2 lines Changed paths: A /trunk/spm_save.m New feature: save data as csv/tsv files. ------------------------------------------------------------------------ r7329 | karl | 2018-06-10 22:12:02 +0100 (Sun, 10 Jun 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_CVA_RSA.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m A /trunk/toolbox/DEM/spm_MDP_link.m Development work on variational RSA and hierarchical MDP ------------------------------------------------------------------------ r7330 | karl | 2018-06-12 20:19:24 +0100 (Tue, 12 Jun 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m MDP development work ------------------------------------------------------------------------ r7331 | guillaume | 2018-06-14 10:51:37 +0100 (Thu, 14 Jun 2018) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_util.m Enhancement: MATLAB/Octave compatibility with isequalwithequalnans/isequaln. ------------------------------------------------------------------------ r7332 | spm | 2018-06-15 11:22:24 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/README A /trunk/external/fieldtrip/connectivity/ft_connectivity_cancorr.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_corr.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_dtf.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m A /trunk/external/fieldtrip/connectivity/ft_connectivity_mim.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_mutualinformation.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_pdc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_powcorr_ortho.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_ppc.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_psi.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_wpli.m M /trunk/external/fieldtrip/connectivity/private/defaultId.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/transfer2coeffs.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fieldtrip2spss.m M /trunk/external/fieldtrip/fileio/README M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/decode_res4.m M /trunk/external/fieldtrip/fileio/private/defaultId.m M /trunk/external/fieldtrip/fileio/private/fixsampleinfo.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_comp.m M 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/trunk/external/fieldtrip/fileio/private/read_trigger.m A /trunk/external/fieldtrip/fileio/private/ricoh2grad.m M /trunk/external/fieldtrip/fileio/private/write_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/write_gdf.m M /trunk/external/fieldtrip/fileio/private/yokogawa2grad_new.m M /trunk/external/fieldtrip/forward/README M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_determine_units.m M /trunk/external/fieldtrip/forward/ft_senstype.m M /trunk/external/fieldtrip/forward/private/defaultId.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/hasyokogawa.m M /trunk/external/fieldtrip/ft_anonimizedata.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendfreq.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_artifact_clip.m M /trunk/external/fieldtrip/ft_artifact_ecg.m M /trunk/external/fieldtrip/ft_artifact_eog.m M /trunk/external/fieldtrip/ft_artifact_jump.m M /trunk/external/fieldtrip/ft_artifact_muscle.m M /trunk/external/fieldtrip/ft_artifact_nan.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M 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/trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourcemovie.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_analytic.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_statistics_stats.m M /trunk/external/fieldtrip/ft_stratify.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_volumelookup.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m A /trunk/external/fieldtrip/imotions2fieldtrip.m M /trunk/external/fieldtrip/inverse/README M /trunk/external/fieldtrip/inverse/music.m M /trunk/external/fieldtrip/inverse/private/defaultId.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/inverse/private/ft_senstype.m M /trunk/external/fieldtrip/inverse/private/hasyokogawa.m M /trunk/external/fieldtrip/inverse/private/mkfilt_eloreta_v2.m M /trunk/external/fieldtrip/inverse/private/quaternion.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/plotting/README M /trunk/external/fieldtrip/plotting/ft_plot_box.m M /trunk/external/fieldtrip/plotting/ft_plot_cloud.m M /trunk/external/fieldtrip/plotting/ft_plot_crosshair.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_lay.m M /trunk/external/fieldtrip/plotting/ft_plot_line.m M /trunk/external/fieldtrip/plotting/ft_plot_matrix.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_patch.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_topo3d.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/ft_select_point3d.m M /trunk/external/fieldtrip/plotting/ft_select_range.m M /trunk/external/fieldtrip/plotting/private/defaultId.m A /trunk/external/fieldtrip/plotting/private/find_mesh_edge.m A /trunk/external/fieldtrip/plotting/private/find_triangle_neighbours.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_determine_units.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_senstype.m A /trunk/external/fieldtrip/plotting/private/headsurface.m M /trunk/external/fieldtrip/plotting/private/quaternion.m M /trunk/external/fieldtrip/plotting/private/skin.m M /trunk/external/fieldtrip/preproc/README M /trunk/external/fieldtrip/preproc/ft_preproc_medianfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_padding.m M /trunk/external/fieldtrip/preproc/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/preproc/private/defaultId.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/private/append_common.m D /trunk/external/fieldtrip/private/artifact_viewer.m A /trunk/external/fieldtrip/private/bg_rgba2rgb.m M /trunk/external/fieldtrip/private/bivariate_common.m M /trunk/external/fieldtrip/private/blockindx2cmbindx.m D /trunk/external/fieldtrip/private/cancorr.m M /trunk/external/fieldtrip/private/chanscale_common.m M /trunk/external/fieldtrip/private/defaultId.m A /trunk/external/fieldtrip/private/determine_griddim.m M /trunk/external/fieldtrip/private/elec1020_locate.m M /trunk/external/fieldtrip/private/estimate_fwhm1.m M /trunk/external/fieldtrip/private/fixsampleinfo.m M /trunk/external/fieldtrip/private/ignorefields.m A /trunk/external/fieldtrip/private/isalmostequal.m M /trunk/external/fieldtrip/private/labelcmb2indx.m M /trunk/external/fieldtrip/private/mxDeserialize.m M /trunk/external/fieldtrip/private/mxSerialize.m A /trunk/external/fieldtrip/private/parsekeyboardevent.m M /trunk/external/fieldtrip/private/pipeline-skeleton.html M /trunk/external/fieldtrip/private/preproc.m M /trunk/external/fieldtrip/private/quaternion.m M /trunk/external/fieldtrip/private/read_ctf_hist.m A /trunk/external/fieldtrip/private/read_imotions_txt.m M /trunk/external/fieldtrip/private/rollback_provenance.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/warp_dykstra2012.m A /trunk/external/fieldtrip/private/warp_fsaverage.m A /trunk/external/fieldtrip/private/warp_hermes2010.m M /trunk/external/fieldtrip/specest/private/defaultId.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_preproc_polyremoval.m M /trunk/external/fieldtrip/src/getpid.c M /trunk/external/fieldtrip/src/mxDeserialize.m M /trunk/external/fieldtrip/src/mxDeserialize_c.c M /trunk/external/fieldtrip/src/mxSerialize.m M /trunk/external/fieldtrip/src/mxSerialize_c.c M /trunk/external/fieldtrip/src/read_16bit.c M /trunk/external/fieldtrip/src/read_24bit.c M /trunk/external/fieldtrip/src/rfbevent.c M /trunk/external/fieldtrip/statfun/ft_statfun_actvsblT.m M /trunk/external/fieldtrip/statfun/ft_statfun_correlationT.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFmultivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesT.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesregrT.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff.m M /trunk/external/fieldtrip/statfun/ft_statfun_diff_itc.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesF.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesT.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesZcoh.m M /trunk/external/fieldtrip/statfun/ft_statfun_indepsamplesregrT.m M /trunk/external/fieldtrip/statfun/ft_statfun_mean.m M /trunk/external/fieldtrip/statfun/ft_statfun_pooledT.m M /trunk/external/fieldtrip/statfun/ft_statfun_roc.m M /trunk/external/fieldtrip/statfun/private/defaultId.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_example1.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m A /trunk/external/fieldtrip/trialfun/ft_trialfun_imotions.m M /trunk/external/fieldtrip/trialfun/private/defaultId.m M /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_comp.m M /trunk/external/fieldtrip/utilities/ft_datatype_freq.m M /trunk/external/fieldtrip/utilities/ft_datatype_mvar.m M /trunk/external/fieldtrip/utilities/ft_datatype_raw.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_fetch_header.m M /trunk/external/fieldtrip/utilities/ft_findcfg.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_struct2double.m M /trunk/external/fieldtrip/utilities/ft_trackusage.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/defaultId.m M /trunk/external/fieldtrip/utilities/private/fixsampleinfo.m M /trunk/external/fieldtrip/utilities/private/ft_findcfg.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/individual2sn.m M /trunk/external/fieldtrip/utilities/private/labelcmb2indx.m A /trunk/external/fieldtrip/utilities/private/makessense.m M /trunk/external/fieldtrip/utilities/private/mxSerialize.m M /trunk/external/fieldtrip/utilities/private/quaternion.m M /trunk/external/fieldtrip/utilities/private/sn2individual.m update of external/fieldtrip to 4c4720c ------------------------------------------------------------------------ r7333 | spm | 2018-06-15 11:50:12 +0100 (Fri, 15 Jun 2018) | 2 lines Changed paths: A /trunk/external/ricoh_meg_reader A /trunk/external/ricoh_meg_reader/Contents.m A /trunk/external/ricoh_meg_reader/EULAforRICOHMEGReaderToolbox.pdf A /trunk/external/ricoh_meg_reader/RICOHMEGReaderToolbox_1.0_specifications.pdf A /trunk/external/ricoh_meg_reader/getRData.p A /trunk/external/ricoh_meg_reader/getRHdrAcqCond.p A /trunk/external/ricoh_meg_reader/getRHdrAnnotation.p A /trunk/external/ricoh_meg_reader/getRHdrChannel.p A /trunk/external/ricoh_meg_reader/getRHdrCoregist.p A /trunk/external/ricoh_meg_reader/getRHdrDigitize.p A /trunk/external/ricoh_meg_reader/getRHdrEvent.p A /trunk/external/ricoh_meg_reader/getRHdrSource.p A /trunk/external/ricoh_meg_reader/getRHdrSubject.p A /trunk/external/ricoh_meg_reader/getRHdrSystem.p A /trunk/external/ricoh_meg_reader/getRMriHdr.p A /trunk/external/ricoh_meg_reader/getRVersion.p A /trunk/external/ricoh_meg_reader/private A /trunk/external/ricoh_meg_reader/private/GetSqf.p New feature: Adding Ricoh MEG reader. ------------------------------------------------------------------------ r7334 | volkmar | 2018-06-15 13:44:37 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/@cfg_entry/showdoc.m M /trunk/matlabbatch/@cfg_entry/subsasgn_check.m String typos. ------------------------------------------------------------------------ r7335 | volkmar | 2018-06-15 13:44:38 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/@cfg_entry/cfg_entry.m M /trunk/matlabbatch/@cfg_entry/match.m M /trunk/matlabbatch/@cfg_entry/showdoc.m M /trunk/matlabbatch/@cfg_entry/subsasgn_check.m M /trunk/matlabbatch/cfg_confgui/cfg_confgui.m M /trunk/matlabbatch/cfg_ui_util.m Added support for strtype 's+' (multiline strings). ------------------------------------------------------------------------ r7336 | volkmar | 2018-06-15 13:44:39 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/@cfg_mchoice/setval.m M /trunk/matlabbatch/cfg_confgui/cfg_confgui.m M /trunk/matlabbatch/cfg_struct2cfg.m M /trunk/matlabbatch/cfg_ui_util.m Add full support for cfg_mchoice. ------------------------------------------------------------------------ r7337 | volkmar | 2018-06-15 13:44:40 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_confgui/cfg_confgui.m Fix configuration GUI for mchoice. ------------------------------------------------------------------------ r7338 | volkmar | 2018-06-15 13:44:41 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Log times when executing job. ------------------------------------------------------------------------ r7339 | volkmar | 2018-06-15 13:44:42 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/@cfg_entry/subsasgn_check.m Fixed error message. ------------------------------------------------------------------------ r7340 | volkmar | 2018-06-15 13:44:42 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Catch harvest errors in local_runcj. Improves display of actual cause of errors and stores already completed results. ------------------------------------------------------------------------ r7341 | volkmar | 2018-06-15 13:44:43 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Fix typo in help text. ------------------------------------------------------------------------ r7342 | volkmar | 2018-06-15 13:44:44 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/@cfg_menu/setval.m Allow cfg_dep object to be passed to cfg_menu/setval. At runtime, the dependency must hold an index into the list of allowed menu entries. The corresponding value will then be looked up in setval. ------------------------------------------------------------------------ r7343 | volkmar | 2018-06-15 13:44:45 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Allow a mix of job files and job variables to be initialised. ------------------------------------------------------------------------ r7344 | volkmar | 2018-06-15 13:44:46 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/gencode_rvalue.m Add escape value for char(13) to string code generation. ------------------------------------------------------------------------ r7345 | volkmar | 2018-06-15 13:44:47 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_util.m Fix bug introduced in 98c8454a1ac45e5338964fb3f64de7c5095afb45. Properly check cases for valid jobs: * Single jobs - character string - cell array of structs * Job lists with a mixture of filenames and cell arrays of structs ------------------------------------------------------------------------ r7346 | volkmar | 2018-06-15 13:44:47 +0100 (Fri, 15 Jun 2018) | 1 line Changed paths: M /trunk/matlabbatch/cfg_ui.m Check whether original batch folder still exists before trying to save into it. ------------------------------------------------------------------------ r7347 | vladimir | 2018-06-15 17:00:18 +0100 (Fri, 15 Jun 2018) | 2 lines Changed paths: M /trunk/spm.m Add ricoh toolbox to path ------------------------------------------------------------------------ r7348 | vladimir | 2018-06-16 11:23:41 +0100 (Sat, 16 Jun 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_headshape.m Fix for a bug in ricoh code ------------------------------------------------------------------------ r7349 | spm | 2018-06-18 13:29:09 +0100 (Mon, 18 Jun 2018) | 1 line Changed paths: M /trunk/external/yokogawa_meg_reader/Contents.m A /trunk/external/yokogawa_meg_reader/EULAforYOKOGAWAMEGReaderToolbox.pdf D /trunk/external/yokogawa_meg_reader/GetSqf.p D /trunk/external/yokogawa_meg_reader/YokogawaMEGReaderToolbox_1.4_specifications.pdf A /trunk/external/yokogawa_meg_reader/YokogawaMEGReaderToolbox_1.5_specifications.pdf D /trunk/external/yokogawa_meg_reader/getYkgwData.m M /trunk/external/yokogawa_meg_reader/getYkgwData.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrAcqCond.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrAcqCond.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrBookmark.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrBookmark.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrChannel.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrChannel.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrCoregist.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrCoregist.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrDigitize.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrDigitize.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrEvent.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrEvent.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrSource.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrSource.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrSubject.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrSubject.p D /trunk/external/yokogawa_meg_reader/getYkgwHdrSystem.m M /trunk/external/yokogawa_meg_reader/getYkgwHdrSystem.p D /trunk/external/yokogawa_meg_reader/getYkgwMriHdr.m M /trunk/external/yokogawa_meg_reader/getYkgwMriHdr.p D /trunk/external/yokogawa_meg_reader/getYkgwVersion.m M /trunk/external/yokogawa_meg_reader/getYkgwVersion.p A /trunk/external/yokogawa_meg_reader/private A /trunk/external/yokogawa_meg_reader/private/GetSqf.p update of external/yokogawa_meg_reader from FieldTrip ------------------------------------------------------------------------ r7350 | vladimir | 2018-06-18 14:23:50 +0100 (Mon, 18 Jun 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_headshape.m additonal fix for yokogawa headshape ------------------------------------------------------------------------ r7351 | vladimir | 2018-06-18 16:10:01 +0100 (Mon, 18 Jun 2018) | 2 lines Changed paths: M /trunk/spm_eeg_history.m Added tf_rescale ------------------------------------------------------------------------ r7352 | guillaume | 2018-06-19 11:32:05 +0100 (Tue, 19 Jun 2018) | 3 lines Changed paths: M /trunk/spm_file_merge.m Bug fix: set NIfTI header's intent_code to that of input files. See discussion in https://neurostars.org/t/1799 ------------------------------------------------------------------------ r7353 | guillaume | 2018-06-19 11:39:55 +0100 (Tue, 19 Jun 2018) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/src/Makefile.var M /trunk/src/spm_mapping.c M /trunk/src/spm_vol_access.c Enhancement: Windows compilation of MEX files with GCC. ------------------------------------------------------------------------ r7354 | guillaume | 2018-06-22 11:44:22 +0100 (Fri, 22 Jun 2018) | 2 lines Changed paths: M /trunk/@gifti/private/mvtk_read.m M /trunk/config/spm_run_fmri_est.m M /trunk/config/spm_run_tissue_volumes.m M /trunk/spm_BIDS.m M /trunk/spm_copy.m M /trunk/spm_eeg_inv_forward.m M /trunk/spm_file_merge.m M /trunk/spm_load.m M /trunk/spm_mesh_contour.m M /trunk/spm_ncFcdf.m M /trunk/spm_save.m Enhancements: various minor changes. ------------------------------------------------------------------------ r7355 | john | 2018-06-22 12:40:55 +0100 (Fri, 22 Jun 2018) | 3 lines Changed paths: M /trunk/config/spm_cfg_dicom.m M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_essentials.m * Removed a bit more relating to Patient(s)Name, for greater anonymity. ------------------------------------------------------------------------ r7356 | guillaume | 2018-06-26 09:55:33 +0100 (Tue, 26 Jun 2018) | 2 lines Changed paths: M /trunk/src/Makefile M /trunk/src/Makefile.var Enhancement: .o files are now removed automatically (see bug #54182). ------------------------------------------------------------------------ r7357 | john | 2018-06-27 11:28:50 +0100 (Wed, 27 Jun 2018) | 3 lines Changed paths: M /trunk/spm_dicom_convert.m * Now uses Philips shadow tags to rescale images to make them a bit more quantitative. This was a request from Tobias Leutritz, and the various quantitative MRI people. ------------------------------------------------------------------------ r7358 | john | 2018-06-27 11:33:24 +0100 (Wed, 27 Jun 2018) | 2 lines Changed paths: M /trunk/spm_dicom_essentials.m * Forgot to change this too. ------------------------------------------------------------------------ r7359 | spm | 2018-06-27 15:07:15 +0100 (Wed, 27 Jun 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m A /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_heartrate.m A /trunk/external/fieldtrip/ft_respiration.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m A /trunk/external/fieldtrip/private/multivariate_decomp.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_version.m update of external/fieldtrip to 47e9dc3 ------------------------------------------------------------------------ r7360 | guillaume | 2018-06-28 11:40:04 +0100 (Thu, 28 Jun 2018) | 2 lines Changed paths: M /trunk/@gifti/saveas.m A /trunk/help/images/karl.jpg A /trunk/help/js A /trunk/help/js/plotly.min.js A /trunk/help/plot.html M /trunk/spm_figure.m New feature: Export mesh as JS variable for Plotly. ------------------------------------------------------------------------ r7361 | guillaume | 2018-06-28 17:56:32 +0100 (Thu, 28 Jun 2018) | 2 lines Changed paths: M /trunk/@gifti/saveas.m M /trunk/spm_mesh_render.m Enhancement: Add JS export option in mesh render. ------------------------------------------------------------------------ r7362 | guillaume | 2018-07-02 12:32:39 +0100 (Mon, 02 Jul 2018) | 1 line Changed paths: M /trunk/spm.m Make FieldTrip usage tracking off by default. ------------------------------------------------------------------------ r7363 | guillaume | 2018-07-03 12:30:49 +0100 (Tue, 03 Jul 2018) | 2 lines Changed paths: M /trunk/spm_check_installation.m M /trunk/spm_update.m Bug fix: Use HTTPS when connecting to the SPM server (check and update). ------------------------------------------------------------------------ r7364 | peter | 2018-07-03 15:02:46 +0100 (Tue, 03 Jul 2018) | 1 line Changed paths: M /trunk/spm_dcm_fit.m A /trunk/tests/test_spm_dcm_fit.m Added support for parfor to spm_dcm_fit ------------------------------------------------------------------------ r7365 | peter | 2018-07-03 15:10:43 +0100 (Tue, 03 Jul 2018) | 1 line Changed paths: M /trunk/tests/test_spm_dcm_fit.m Increased speed of unit test and disabled graphics ------------------------------------------------------------------------ r7366 | guillaume | 2018-07-03 17:02:11 +0100 (Tue, 03 Jul 2018) | 2 lines Changed paths: M /trunk/@gifti/gifti.m M /trunk/@gifti/private/read_freesurfer_file.m M /trunk/@gifti/private/read_gifti_file.m Enhancement: Add support for more of the FreeSurfer data files. ------------------------------------------------------------------------ r7367 | guillaume | 2018-07-06 17:04:27 +0100 (Fri, 06 Jul 2018) | 2 lines Changed paths: M /trunk/spm_mesh_area.m Bug fix: Force area to be positive for degenerate triangles due to numerical instability. ------------------------------------------------------------------------ r7368 | spm | 2018-07-06 17:36:18 +0100 (Fri, 06 Jul 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/private/read_ricoh_event.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_event.m M /trunk/external/fieldtrip/private/triangle2distance.m A /trunk/external/fieldtrip/utilities/ft_compile_standalone.m A /trunk/external/fieldtrip/utilities/ft_standalone.m A /trunk/external/fieldtrip/utilities/private/hcp_getopt.m A /trunk/external/fieldtrip/utilities/private/hcp_provenance.m update of external/fieldtrip to 88a049a ------------------------------------------------------------------------ r7369 | peter | 2018-07-09 10:58:03 +0100 (Mon, 09 Jul 2018) | 1 line Changed paths: M /trunk/spm_dcm_bmr.m M /trunk/tests/test_spm_dcm_bmr.m Fix to spm_dcm_bmr.m for when there are exactly 2 subjects ------------------------------------------------------------------------ r7370 | guillaume | 2018-07-09 11:44:51 +0100 (Mon, 09 Jul 2018) | 2 lines Changed paths: M /trunk/@nifti/private/read_extras.m M /trunk/@nifti/private/read_hdr.m M /trunk/@nifti/private/write_hdr_raw.m M /trunk/@nifti/subsasgn.m Enhancement: make @nifti class standalone SPM-wise. ------------------------------------------------------------------------ r7371 | peter | 2018-07-09 16:34:19 +0100 (Mon, 09 Jul 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_peb.m M /trunk/tests/test_spm_cfg_dcm_peb.m Updates to the PEB batch. Now only adds a constant column at the beginning of the design matrix if one is not found. Added an option for precision components which changes the default from single to all. ------------------------------------------------------------------------ r7372 | guillaume | 2018-07-09 17:50:44 +0100 (Mon, 09 Jul 2018) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/help/index.html M /trunk/spm.m M /trunk/spm_BIDS.m M /trunk/spm_check_installation.m M /trunk/spm_figure.m M /trunk/spm_help.m M /trunk/spm_standalone.m M /trunk/spm_toolbox.m M /trunk/spm_update.m Enhancement: use HTTPS throughout apart from URLs that are accessed from MATLAB. ------------------------------------------------------------------------ r7373 | guillaume | 2018-07-09 17:57:21 +0100 (Mon, 09 Jul 2018) | 2 lines Changed paths: M /trunk/@gifti/saveas.m M /trunk/help/plot.html M /trunk/spm_jsonwrite.m M /trunk/spm_mesh_render.m Enhancement: Export mesh as JSON for Plotly, and faster numeric vector export. ------------------------------------------------------------------------ r7374 | guillaume | 2018-07-09 18:09:46 +0100 (Mon, 09 Jul 2018) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_essentials.m M /trunk/spm_dicom_header.m M /trunk/spm_dicom_headers.m Doc: code cleaning and MATLAB backward compatibility. ------------------------------------------------------------------------ r7375 | guillaume | 2018-07-11 15:51:50 +0100 (Wed, 11 Jul 2018) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m Bug fix: previous merge (r7374) and index bug (r7357). ------------------------------------------------------------------------ r7376 | guillaume | 2018-07-20 11:30:59 +0100 (Fri, 20 Jul 2018) | 2 lines Changed paths: A /trunk/spm_colourmap.m M /trunk/spm_figure.m M /trunk/spm_orthviews.m M /trunk/spm_transverse.m Refactoring: handling of colourmaps. ------------------------------------------------------------------------ r7377 | guillaume | 2018-07-23 14:56:24 +0100 (Mon, 23 Jul 2018) | 3 lines Changed paths: M /trunk/spm_affine_priors.m M /trunk/spm_maff8.m M /trunk/spm_orthviews/spm_ov_browser.m M /trunk/toolbox/OldNorm/spm_affreg.m Enhancement: command the browser tool from the command line. Doc: remove mlint warnings. ------------------------------------------------------------------------ r7378 | thomas | 2018-07-24 16:18:47 +0100 (Tue, 24 Jul 2018) | 2 lines Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Changed MDP.Fa,Fb,Fc,Fd,Fe to negative complexities Skipped computation of posterior predictive densities for HMM mode ------------------------------------------------------------------------ r7379 | guillaume | 2018-07-25 10:11:24 +0100 (Wed, 25 Jul 2018) | 2 lines Changed paths: M /trunk/@gifti/Contents.m M /trunk/@gifti/private/getdict.m Enhancement: add extra data types for GIfTI files. ------------------------------------------------------------------------ r7380 | guillaume | 2018-07-25 10:49:27 +0100 (Wed, 25 Jul 2018) | 2 lines Changed paths: M /trunk/@gifti/plot.m M /trunk/spm_spy.m M /trunk/toolbox/SRender/spm_srender.m Enhancement: use cameratoolbar instead of cameramenu. ------------------------------------------------------------------------ r7381 | guillaume | 2018-07-25 11:27:54 +0100 (Wed, 25 Jul 2018) | 2 lines Changed paths: M /trunk/@gifti/plot.m M /trunk/spm_mesh_render.m M /trunk/spm_render.m M /trunk/spm_surf.m M /trunk/toolbox/SRender/spm_srender.m Enhancement: use gouraud instead of phong (deprecated) for rendering. ------------------------------------------------------------------------ r7382 | karl | 2018-07-25 14:58:04 +0100 (Wed, 25 Jul 2018) | 1 line Changed paths: A /trunk/spm_KL_dir.m M /trunk/spm_kl_dirichlet.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_MDP_link.m Revision of link functions for mixed MDP DEM models – and bug fix for computing complexity of parameters (with addition of a KL divergence routine for Dirichlet distributions) ------------------------------------------------------------------------ r7383 | guillaume | 2018-07-31 11:53:37 +0100 (Tue, 31 Jul 2018) | 3 lines Changed paths: M /trunk/@gifti/export.m M /trunk/@gifti/gifti.m M /trunk/@gifti/private/obj_read.m M /trunk/spm_mesh_normals.m M /trunk/spm_mesh_polyhedron.m A /trunk/spm_mesh_sphere.m A /trunk/tests/test_spm_mesh_sphere.m New feature: triangle mesh of unit sphere (using geodesic polyhedron). Enhancement: minor fixes otherwise. ------------------------------------------------------------------------ r7384 | guillaume | 2018-07-31 14:36:15 +0100 (Tue, 31 Jul 2018) | 2 lines Changed paths: M /trunk/spm_summarise.m Bug fix: revert change from r7320. ------------------------------------------------------------------------ r7385 | guillaume | 2018-08-01 16:58:24 +0100 (Wed, 01 Aug 2018) | 2 lines Changed paths: M /trunk/spm_get_data.m A /trunk/tests/test_spm_get_data.m Enhancement: Always display the original filename in error message. ------------------------------------------------------------------------ r7386 | guillaume | 2018-08-02 16:30:17 +0100 (Thu, 02 Aug 2018) | 2 lines Changed paths: M /trunk/@gifti/gifti.m M /trunk/@gifti/private/read_freesurfer_file.m Enhancement: Add support for even more of the FreeSurfer data files. ------------------------------------------------------------------------ r7387 | john | 2018-08-03 16:13:57 +0100 (Fri, 03 Aug 2018) | 5 lines Changed paths: M /trunk/toolbox/Shoot/covLin.m M /trunk/toolbox/Shoot/spm_GPclass.m M /trunk/toolbox/Shoot/spm_dotprods2.m M /trunk/toolbox/Shoot/spm_lincom.m M /trunk/toolbox/Shoot/spm_shoot3d.m D /trunk/toolbox/Shoot/spm_shoot3d_nojac.m M /trunk/toolbox/Shoot/spm_shoot3di.m M /trunk/toolbox/Shoot/spm_shoot_blur.m M /trunk/toolbox/Shoot/spm_shoot_divergence.m M /trunk/toolbox/Shoot/spm_shoot_greens.m M /trunk/toolbox/Shoot/spm_shoot_kernel.m A /trunk/toolbox/Shoot/spm_shoot_norm.m M /trunk/toolbox/Shoot/spm_shoot_scalmom.m M /trunk/toolbox/Shoot/spm_shoot_template.m M /trunk/toolbox/Shoot/spm_shoot_update.m M /trunk/toolbox/Shoot/spm_shoot_warp.m M /trunk/toolbox/Shoot/tbx_cfg_shoot.m * Lots of cosmetic changes based on mlint suggestions, with a few spelling corrections in tbx_cfg_shoot.m. * Added a new spm_shoot_norm.m function, with associated changes to tbx_cfg_shoot.m. * Deleted spm_shoot3d_nojac.m because it is never called (maybe spm_shoot3di.m is next). ------------------------------------------------------------------------ r7388 | guillaume | 2018-08-06 13:04:26 +0100 (Mon, 06 Aug 2018) | 2 lines Changed paths: M /trunk/spm_XYZreg.m M /trunk/spm_mip_ui.m M /trunk/spm_results_ui.m Bug fix: better handling of graphics objects. ------------------------------------------------------------------------ r7389 | john | 2018-08-06 14:35:48 +0100 (Mon, 06 Aug 2018) | 6 lines Changed paths: M /trunk/toolbox/Shoot/spm_shoot_template.m M /trunk/toolbox/Shoot/spm_shoot_warp.m M /trunk/toolbox/Shoot/tbx_cfg_shoot.m * Changed spm_shoot_warp.m and spm_shoot_template.m so that it is easier to edit the code so that it uses "parfor" instead of "for" loops. Places where parfor can be used can be found by looking for "PARFOR" in the comments. * Minor fix for tbx_cfg_shoot.m ------------------------------------------------------------------------ r7390 | guillaume | 2018-08-13 10:51:20 +0100 (Mon, 13 Aug 2018) | 2 lines Changed paths: M /trunk/@gifti/private/obj_read.m M /trunk/@gifti/private/read_gifti_file.m Enhancement: use strncmp instead of strmatch. ------------------------------------------------------------------------ r7391 | guillaume | 2018-08-13 10:55:17 +0100 (Mon, 13 Aug 2018) | 3 lines Changed paths: M /trunk/spm_file_split.m Bug fix:set NIfTI header's intent_code to that of input files. https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;ce02ed59.1808 ------------------------------------------------------------------------ r7392 | guillaume | 2018-08-13 12:50:28 +0100 (Mon, 13 Aug 2018) | 1 line Changed paths: M /trunk/spm_mesh_contour.m Bug fix: prevent infinite loop. ------------------------------------------------------------------------ r7393 | spm | 2018-08-13 15:24:29 +0100 (Mon, 13 Aug 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m A /trunk/external/fieldtrip/fileio/private/read_brainstorm_data.m A /trunk/external/fieldtrip/fileio/private/read_brainstorm_event.m A /trunk/external/fieldtrip/fileio/private/read_brainstorm_header.m M /trunk/external/fieldtrip/fileio/private/read_ply.m M /trunk/external/fieldtrip/fileio/private/read_ricoh_header.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_header_new.m M /trunk/external/fieldtrip/fileio/private/readmarkerfile.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m A /trunk/external/fieldtrip/forward/ft_sensinterp_openmeeg.m A /trunk/external/fieldtrip/forward/ft_sysmat_openmeeg.m D /trunk/external/fieldtrip/forward/private/leadfield_openmeeg.m M /trunk/external/fieldtrip/forward/private/leadsphere_all.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_definetrial.m M /trunk/external/fieldtrip/ft_headmovement.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_regressconfound.m M /trunk/external/fieldtrip/preproc/ft_preproc_dftfilter.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/specest/ft_specest_hilbert.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m update of external/fieldtrip to ba2ba61 ------------------------------------------------------------------------ r7394 | spm | 2018-08-13 17:24:53 +0100 (Mon, 13 Aug 2018) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_ui.m Enhancement: Add compatibility with uifigures. Thanks to Paul M. ------------------------------------------------------------------------ r7395 | guillaume | 2018-08-14 15:09:21 +0100 (Tue, 14 Aug 2018) | 2 lines Changed paths: A /trunk/spm_mesh_refine.m M /trunk/spm_mesh_sphere.m A /trunk/tests/test_spm_mesh_refine.m M /trunk/tests/test_spm_mesh_sphere.m New feature: refine triangle mesh. ------------------------------------------------------------------------ r7396 | guillaume | 2018-08-15 11:30:31 +0100 (Wed, 15 Aug 2018) | 2 lines Changed paths: M /trunk/spm_regions.m Doc: more explicit error message during VOI time series extraction. ------------------------------------------------------------------------ r7397 | guillaume | 2018-08-15 12:04:26 +0100 (Wed, 15 Aug 2018) | 2 lines Changed paths: A /trunk/spm_mesh_euler.m A /trunk/tests/test_spm_mesh_euler.m New feature: Euler characteristic of a triangle mesh. ------------------------------------------------------------------------ r7398 | thomas | 2018-08-15 15:50:27 +0100 (Wed, 15 Aug 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor change to line 1054 - Dir 'e' parameter accumulation now depends upon eta ------------------------------------------------------------------------ r7399 | guillaume | 2018-08-16 13:04:14 +0100 (Thu, 16 Aug 2018) | 2 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/mz3_read.m M /trunk/@gifti/private/zstream.c M /trunk/@gifti/private/zstream.m New feature: support of (potentially compressed) mz3 files in @gifti. ------------------------------------------------------------------------ r7400 | guillaume | 2018-08-17 14:53:33 +0100 (Fri, 17 Aug 2018) | 2 lines Changed paths: M /trunk/@gifti/private/miniz.c M /trunk/@gifti/private/mz3_read.m M /trunk/@gifti/private/zstream.c Enhancement: update miniz library to 2.0.7 (merging .h into .c) and fix off-by-one error in mz3_read. ------------------------------------------------------------------------ r7401 | guillaume | 2018-08-17 15:41:08 +0100 (Fri, 17 Aug 2018) | 1 line Changed paths: M /trunk/spm_BIDS.m Bug fix: MEG data can be stored as a file or a directory. ------------------------------------------------------------------------ r7402 | tim | 2018-08-17 17:18:12 +0100 (Fri, 17 Aug 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m add OPM branches ------------------------------------------------------------------------ r7403 | tim | 2018-08-17 17:19:13 +0100 (Fri, 17 Aug 2018) | 1 line Changed paths: A /trunk/config/spm_cfg_opm_create.m A /trunk/config/spm_cfg_opm_epoch_trigger.m A /trunk/config/spm_cfg_opm_read_lvm.m A /trunk/config/spm_cfg_opm_synth_gradiometer.m config files for OPM batches ------------------------------------------------------------------------ r7404 | tim | 2018-08-17 17:20:49 +0100 (Fri, 17 Aug 2018) | 1 line Changed paths: A /trunk/toolbox/MEEGtools/createLabels.m A /trunk/toolbox/MEEGtools/spm_opm_BIDS.m A /trunk/toolbox/MEEGtools/spm_opm_create.m A /trunk/toolbox/MEEGtools/spm_opm_epoch_trigger.m A /trunk/toolbox/MEEGtools/spm_opm_read_lvm.m A /trunk/toolbox/MEEGtools/spm_opm_synth_gradiometer.m added OPM functions with BIDS compatibility ------------------------------------------------------------------------ r7405 | tim | 2018-08-20 10:13:03 +0100 (Mon, 20 Aug 2018) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m ------------------------------------------------------------------------ r7406 | john | 2018-08-21 18:29:53 +0100 (Tue, 21 Aug 2018) | 3 lines Changed paths: M /trunk/config/spm_run_norm.m * Fixed something pointed out by Pedro Valdes Hernandez (20th Aug, 2018). ------------------------------------------------------------------------ r7407 | john | 2018-08-24 11:17:21 +0100 (Fri, 24 Aug 2018) | 3 lines Changed paths: M /trunk/spm_dicom_convert.m * Incorporated Evelyn's bug fixes to my code for handling Philips quantitative MRI data. ------------------------------------------------------------------------ r7408 | john | 2018-08-24 15:54:57 +0100 (Fri, 24 Aug 2018) | 12 lines Changed paths: M /trunk/spm_preproc8.m M /trunk/spm_preproc_run.m M /trunk/src/bsplines.h M /trunk/src/shoot_boundary.c M /trunk/src/shoot_bsplines.c M /trunk/src/shoot_dartel.c M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_diffeo3d.h M /trunk/src/shoot_expm3.c M /trunk/src/shoot_expm3.h M /trunk/src/shoot_invdef.c M /trunk/src/shoot_multiscale.c M /trunk/src/shoot_optim3d.c M /trunk/src/shoot_optim3d.h M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c M /trunk/src/shoot_regularisers.h M /trunk/src/spm_diffeo.c M /trunk/toolbox/Longitudinal/spm_dexpm.m M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/Longitudinal/spm_meanm.m M /trunk/toolbox/Longitudinal/spm_noise_estimate.m M /trunk/toolbox/Longitudinal/spm_pairwise.m M /trunk/toolbox/Longitudinal/spm_rice_mixture.m M /trunk/toolbox/Longitudinal/spm_series_align.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m Lots of changes, so hopefully not too many new bugs. * M-file changes are mostly cosmetic and based on mlint suggestions. Mostly removing unnecessary commas and semi-colons. * Most C-file changes are cosmetic and based on splint suggestions. Mostly casting of data types. * Extensive changes to the pushing and pulling (samp) functions in the spm_diffeo mex file. Previously, spm_diffeo('samp',...) and spm_diffeo('push',...) were not the exact adjoint of each other because of the way that voxels at the edge of the FOV were handled. Now they should be. ------------------------------------------------------------------------ r7409 | bernadette | 2018-08-27 12:39:00 +0100 (Mon, 27 Aug 2018) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_L_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_neural_priors.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_fx_gen.m Name change for basal ganglia model BGC -> BGT ------------------------------------------------------------------------ r7410 | john | 2018-09-04 16:32:54 +0100 (Tue, 04 Sep 2018) | 4 lines Changed paths: M /trunk/src/shoot_dartel.h M /trunk/src/shoot_diffeo3d.c * Forgot to declare a variable (j). Fixed. * Changed from '#include' to '#include "mex.h"' for consistency. ------------------------------------------------------------------------ r7411 | john | 2018-09-04 17:48:09 +0100 (Tue, 04 Sep 2018) | 3 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_rice_mixture.m * Hopefully made the computation of Rice distributions more stable by switching to a a Gaussian if there is likely to be over- or underflow. ------------------------------------------------------------------------ r7412 | guillaume | 2018-09-06 11:12:18 +0100 (Thu, 06 Sep 2018) | 2 lines Changed paths: D /trunk/man/example_scripts/DCM_example_MMC_BGC.m A /trunk/man/example_scripts/DCM_example_MMC_BGT.m D /trunk/toolbox/dcm_meeg/spm_bgc_priors.m A /trunk/toolbox/dcm_meeg/spm_bgt_priors.m D /trunk/toolbox/dcm_meeg/spm_fx_bgc.m A /trunk/toolbox/dcm_meeg/spm_fx_bgt.m Enhancement: renaming some DCM files corresponding to basal ganglia neural mass models. From Bernadette van Wijk. ------------------------------------------------------------------------ r7413 | guillaume | 2018-09-07 10:53:34 +0100 (Fri, 07 Sep 2018) | 2 lines Changed paths: A /trunk/spm_mesh_borders.m A /trunk/tests/test_spm_mesh_borders.m New feature: Detect borders of a triangle mesh. ------------------------------------------------------------------------ r7414 | spm | 2018-09-07 12:00:29 +0100 (Fri, 07 Sep 2018) | 2 lines Changed paths: M /trunk/toolbox/MEEGtools/createLabels.m D /trunk/toolbox/MEEGtools/eb_read_lvm.m M /trunk/toolbox/MEEGtools/spm_opm_BIDS.m M /trunk/toolbox/MEEGtools/spm_opm_convert.m M /trunk/toolbox/MEEGtools/spm_opm_create.m M /trunk/toolbox/MEEGtools/spm_opm_denoise.m M /trunk/toolbox/MEEGtools/spm_opm_epoch_trigger.m M /trunk/toolbox/MEEGtools/spm_opm_read_lvm.m M /trunk/toolbox/MEEGtools/spm_opm_synth_gradiometer.m SVN properties and doc. ------------------------------------------------------------------------ r7415 | john | 2018-09-10 19:24:16 +0100 (Mon, 10 Sep 2018) | 6 lines Changed paths: M /trunk/spm_get_closest_affine.m M /trunk/spm_preproc_write8.m M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_diffeo3d.h M /trunk/src/spm_diffeo.c * Bug fix for the part of spm_diffeo that inverts deformation fields. The matrices passed as arguments needed to be converted to single precision. * A change to spm_get_closest_affine.m for when weights might be NaN. This fix may not actually change the behaviour in practice. * Some minor cosmetic changes. ------------------------------------------------------------------------ r7416 | john | 2018-09-11 14:55:13 +0100 (Tue, 11 Sep 2018) | 3 lines Changed paths: M /trunk/spm_dicom_convert.m M /trunk/spm_dicom_dict.mat M /trunk/spm_dicom_dict.txt M /trunk/spm_dicom_essentials.m * Incorporated Evelyne's changes for better handling of Philips data. ------------------------------------------------------------------------ r7417 | guillaume | 2018-09-14 09:53:46 +0100 (Fri, 14 Sep 2018) | 3 lines Changed paths: M /trunk/spm_load.m Enhancement: add option to disable header detection for cvs/tsv files. In the absence of column names, 'VarX' is used instead of 'varX' (for compatibility with readtable). ------------------------------------------------------------------------ r7418 | tim | 2018-09-14 14:16:33 +0100 (Fri, 14 Sep 2018) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m remove readtable and added 'spm_' prefix for createLabels ------------------------------------------------------------------------ r7419 | tim | 2018-09-14 14:17:03 +0100 (Fri, 14 Sep 2018) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_epoch_trigger.m added 'spm_' prefix for label creation ------------------------------------------------------------------------ r7420 | spm | 2018-09-18 12:16:50 +0100 (Tue, 18 Sep 2018) | 2 lines Changed paths: D /trunk/toolbox/MEEGtools/createLabels.m A /trunk/toolbox/MEEGtools/spm_create_labels.m (from /trunk/toolbox/MEEGtools/createLabels.m:7419) Refactoring: renaming function. ------------------------------------------------------------------------ r7421 | guillaume | 2018-09-20 11:58:01 +0100 (Thu, 20 Sep 2018) | 3 lines Changed paths: A /trunk/spm_mesh_reduce.m A /trunk/src/Simplify.h A /trunk/src/spm_mesh_reduce.cpp New feature: Reduce the number of triangles in a mesh. Uses https://github.com/sp4cerat/Fast-Quadric-Mesh-Simplification by Sven Forstmann, MIT licence. ------------------------------------------------------------------------ r7422 | spm | 2018-09-20 12:14:10 +0100 (Thu, 20 Sep 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_getopt.m M /trunk/external/fieldtrip/connectivity/private/ft_platform_supports.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_write_data.m A /trunk/external/fieldtrip/fileio/private/biopac_acq.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_getopt.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_platform_supports.m A /trunk/external/fieldtrip/fileio/private/presentation_log.m M /trunk/external/fieldtrip/fileio/private/read_mpi_ds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_sdma.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_evolution.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_signals.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_spikes.m A /trunk/external/fieldtrip/fileio/private/read_video.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_headmodel_concentricspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_singleshell.m M /trunk/external/fieldtrip/forward/ft_headmodel_singlesphere.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/private/channelposition.m M /trunk/external/fieldtrip/forward/private/eeg_leadfield4_prepare.m M /trunk/external/fieldtrip/forward/private/ft_getopt.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_platform_supports.m M /trunk/external/fieldtrip/forward/private/meg_ini.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_headmovement.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_steadystatesimulation.m M /trunk/external/fieldtrip/ft_timelocksimulation.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/private/ft_getopt.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_platform_supports.m A /trunk/external/fieldtrip/inverse/private/mkfilt_eloreta.m D /trunk/external/fieldtrip/inverse/private/mkfilt_eloreta_v2.m M /trunk/external/fieldtrip/nutmeg2fieldtrip.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/private/channelposition.m A /trunk/external/fieldtrip/plotting/private/fitsphere.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_volume.m M /trunk/external/fieldtrip/plotting/private/ft_getopt.m M /trunk/external/fieldtrip/plotting/private/ft_platform_supports.m M /trunk/external/fieldtrip/preproc/private/ft_platform_supports.m M /trunk/external/fieldtrip/private/channelposition.m M /trunk/external/fieldtrip/private/ignorefields.m A /trunk/external/fieldtrip/private/ismatch.m M /trunk/external/fieldtrip/private/mergeconfig.m M /trunk/external/fieldtrip/private/prepare_headmodel.m A /trunk/external/fieldtrip/private/warp_fsinflated.m M /trunk/external/fieldtrip/specest/private/ft_getopt.m M /trunk/external/fieldtrip/specest/private/ft_platform_supports.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m A /trunk/external/fieldtrip/trialfun/private/ismatch.m M /trunk/external/fieldtrip/utilities/ft_compile_standalone.m M /trunk/external/fieldtrip/utilities/ft_convert_coordsys.m M /trunk/external/fieldtrip/utilities/ft_datatype_volume.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_getopt.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_platform_supports.m M /trunk/external/fieldtrip/utilities/ft_postamble.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m D /trunk/external/fieldtrip/utilities/ft_selectdata_new.m D /trunk/external/fieldtrip/utilities/ft_selectdata_old.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/channelposition.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_debug.m A /trunk/external/fieldtrip/utilities/private/ft_postamble_hastoolbox.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_history.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_previous.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_randomseed.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_savevar.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_trackconfig.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_debug.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_loadvar.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_provenance.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_randomseed.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_trackconfig.m M /trunk/external/fieldtrip/utilities/private/ft_test_report.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m Update of external/fieldtrip to 8cd2a50 ------------------------------------------------------------------------ r7423 | spm | 2018-09-20 14:58:15 +0100 (Thu, 20 Sep 2018) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 M /trunk/@file_array/private/mat2file.mexw64 M /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/external/bemcp/bem_Cii_cog.mexw64 M /trunk/external/bemcp/bem_Cii_cst.mexw64 M /trunk/external/bemcp/bem_Cii_lin.mexw64 M /trunk/external/bemcp/bem_Cij_cog.mexw64 M /trunk/external/bemcp/bem_Cij_cst.mexw64 M /trunk/external/bemcp/bem_Cij_lin.mexw64 M /trunk/external/bemcp/bem_Gi_cog.mexw64 M /trunk/external/bemcp/bem_Gi_vert.mexw64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/external/stats/nanmean.mexw64 M /trunk/external/fieldtrip/external/stats/nanstd.mexw64 M /trunk/external/fieldtrip/external/stats/nansum.mexw64 M /trunk/external/fieldtrip/external/stats/nanvar.mexw64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw64 M /trunk/external/fieldtrip/forward/private/plgndr.mexw64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw64 M /trunk/external/fieldtrip/forward/private/routlm.mexw64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw64 M /trunk/external/fieldtrip/private/lmoutr.mexw64 M /trunk/external/fieldtrip/private/plgndr.mexw64 M /trunk/external/fieldtrip/private/ptriproj.mexw64 M /trunk/external/fieldtrip/private/routlm.mexw64 M /trunk/external/fieldtrip/private/solid_angle.mexw64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexw64 A /trunk/spm_mesh_reduce.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/src/Makefile.var M /trunk/src/Simplify.h M /trunk/src/shoot_diffeo3d.c M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw64 M /trunk/toolbox/FieldMap/pm_pad.mexw64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7424 | spm | 2018-09-20 16:47:51 +0100 (Thu, 20 Sep 2018) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/init.mexw32 M /trunk/@file_array/private/mat2file.mexw32 M /trunk/@gifti/private/miniz.c M /trunk/@gifti/private/zstream.mexw32 M /trunk/@xmltree/private/xml_findstr.mexw32 M /trunk/external/bemcp/bem_Cii_cog.mexw32 M /trunk/external/bemcp/bem_Cii_cst.mexw32 M /trunk/external/bemcp/bem_Cii_lin.mexw32 M /trunk/external/bemcp/bem_Cij_cog.mexw32 M /trunk/external/bemcp/bem_Cij_cst.mexw32 M /trunk/external/bemcp/bem_Cij_lin.mexw32 M /trunk/external/bemcp/bem_Gi_cog.mexw32 M /trunk/external/bemcp/bem_Gi_vert.mexw32 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/external/stats/nanmean.mexw32 M /trunk/external/fieldtrip/external/stats/nanstd.mexw32 M /trunk/external/fieldtrip/external/stats/nansum.mexw32 M /trunk/external/fieldtrip/external/stats/nanvar.mexw32 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw32 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw32 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw32 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw32 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw32 M /trunk/external/fieldtrip/forward/private/plgndr.mexw32 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw32 M /trunk/external/fieldtrip/forward/private/routlm.mexw32 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw32 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw32 M /trunk/external/fieldtrip/private/lmoutr.mexw32 M /trunk/external/fieldtrip/private/plgndr.mexw32 M /trunk/external/fieldtrip/private/ptriproj.mexw32 M /trunk/external/fieldtrip/private/routlm.mexw32 M /trunk/external/fieldtrip/private/solid_angle.mexw32 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw32 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw32 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_jsonread.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw32 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw32 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw32 M /trunk/toolbox/FieldMap/pm_pad.mexw32 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7425 | spm | 2018-09-20 16:54:25 +0100 (Thu, 20 Sep 2018) | 1 line Changed paths: A /trunk/spm_mesh_reduce.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7426 | guillaume | 2018-09-20 17:17:04 +0100 (Thu, 20 Sep 2018) | 1 line Changed paths: M /trunk/@gifti/private/zstream.mexa64 M /trunk/spm_add.mexa64 M /trunk/spm_bsplinc.mexa64 M /trunk/spm_conv_vol.mexa64 M /trunk/spm_diffeo.mexa64 M /trunk/spm_field.mexa64 M /trunk/spm_gamrnd.mexa64 M /trunk/spm_global.mexa64 M /trunk/spm_jsonread.mexa64 A /trunk/spm_mesh_reduce.mexa64 M /trunk/spm_mesh_utils.mexa64 M /trunk/spm_render_vol.mexa64 M /trunk/spm_resels_vol.mexa64 M /trunk/spm_sample_vol.mexa64 M /trunk/spm_slice_vol.mexa64 M /trunk/src/Makefile M /trunk/toolbox/OldNorm/spm_brainwarp.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34-12. ------------------------------------------------------------------------ r7427 | spm | 2018-09-21 10:18:12 +0100 (Fri, 21 Sep 2018) | 1 line Changed paths: M /trunk/@gifti/private/zstream.mexmaci64 M /trunk/spm_add.mexmaci64 M /trunk/spm_bsplinc.mexmaci64 M /trunk/spm_conv_vol.mexmaci64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_field.mexmaci64 M /trunk/spm_gamrnd.mexmaci64 M /trunk/spm_global.mexmaci64 M /trunk/spm_jsonread.mexmaci64 M /trunk/spm_mesh_utils.mexmaci64 M /trunk/spm_render_vol.mexmaci64 M /trunk/spm_resels_vol.mexmaci64 M /trunk/spm_sample_vol.mexmaci64 M /trunk/spm_slice_vol.mexmaci64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexmaci64 Compilation with MATLAB R2017a, Clang 6.0 and OS X 10.9.5 ------------------------------------------------------------------------ r7428 | guillaume | 2018-09-25 14:25:13 +0100 (Tue, 25 Sep 2018) | 2 lines Changed paths: M /trunk/@gifti/private/mz3_read.m M /trunk/spm_colourmap.m Enhancement: allow for multidimensional data in MZ3 format. ------------------------------------------------------------------------ r7429 | spm | 2018-09-28 10:29:20 +0100 (Fri, 28 Sep 2018) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_opmsetup.m M /trunk/config/spm_cfg_opm_create.m M /trunk/config/spm_cfg_opm_epoch_trigger.m M /trunk/config/spm_cfg_opm_read_lvm.m M /trunk/config/spm_cfg_opm_synth_gradiometer.m Bug fix: backward compatibility with old MATLAB versions and SVN properties. ------------------------------------------------------------------------ r7430 | spm | 2018-09-28 10:49:35 +0100 (Fri, 28 Sep 2018) | 2 lines Changed paths: A /trunk/external/fieldtrip/fileio/private/isfolder.m A /trunk/external/fieldtrip/forward/private/isfolder.m A /trunk/external/fieldtrip/inverse/private/isfolder.m A /trunk/external/fieldtrip/private/isfolder.m A /trunk/external/fieldtrip/utilities/private/isfolder.m Fieldtrip: backward compatibility with older MATLAB versions. ------------------------------------------------------------------------ r7431 | spm | 2018-09-28 12:00:27 +0100 (Fri, 28 Sep 2018) | 2 lines Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m D /trunk/external/fieldtrip/fileio/private/isfolder.m M /trunk/external/fieldtrip/fileio/private/read_mpi_ds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_sdma.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_evolution.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_signals.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_spikes.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m D /trunk/external/fieldtrip/forward/private/isfolder.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m D /trunk/external/fieldtrip/inverse/private/isfolder.m D /trunk/external/fieldtrip/private/isfolder.m M /trunk/external/fieldtrip/private/warp_fsaverage.m M /trunk/external/fieldtrip/utilities/ft_compile_standalone.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m D /trunk/external/fieldtrip/utilities/private/isfolder.m MATLAB complains about potential name conflict with builtin isfolder so patching FieldTrip instead. ------------------------------------------------------------------------ r7432 | guillaume | 2018-09-28 15:35:27 +0100 (Fri, 28 Sep 2018) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_Menu.fig A /trunk/spm_Menu.m Refactoring: own function for SPM's menu. ------------------------------------------------------------------------ r7433 | spm | 2018-10-01 12:35:31 +0100 (Mon, 01 Oct 2018) | 3 lines Changed paths: A /trunk/external/fieldtrip/compat A /trunk/external/fieldtrip/compat/incorrect A /trunk/external/fieldtrip/compat/incorrect/README A /trunk/external/fieldtrip/compat/matlablt2010b A /trunk/external/fieldtrip/compat/matlablt2010b/README A /trunk/external/fieldtrip/compat/matlablt2010b/iscolumn.m A /trunk/external/fieldtrip/compat/matlablt2010b/ismatrix.m A /trunk/external/fieldtrip/compat/matlablt2010b/isrow.m A /trunk/external/fieldtrip/compat/matlablt2011b A /trunk/external/fieldtrip/compat/matlablt2011b/README A /trunk/external/fieldtrip/compat/matlablt2011b/narginchk.m A /trunk/external/fieldtrip/compat/matlablt2012a A /trunk/external/fieldtrip/compat/matlablt2012a/README A /trunk/external/fieldtrip/compat/matlablt2012a/isequaln.m A /trunk/external/fieldtrip/compat/matlablt2013b A /trunk/external/fieldtrip/compat/matlablt2013b/README A /trunk/external/fieldtrip/compat/matlablt2013b/istable.m A /trunk/external/fieldtrip/compat/matlablt2016b A /trunk/external/fieldtrip/compat/matlablt2016b/README A /trunk/external/fieldtrip/compat/matlablt2016b/contains.m A /trunk/external/fieldtrip/compat/matlablt2016b/endsWith.m A /trunk/external/fieldtrip/compat/matlablt2016b/newline.m A /trunk/external/fieldtrip/compat/matlablt2016b/pad.m A /trunk/external/fieldtrip/compat/matlablt2016b/startsWith.m A /trunk/external/fieldtrip/compat/matlablt2017b A /trunk/external/fieldtrip/compat/matlablt2017b/README A /trunk/external/fieldtrip/compat/matlablt2017b/isfile.m A /trunk/external/fieldtrip/compat/matlablt2017b/isfolder.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/filetype_check_header.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m A /trunk/external/fieldtrip/fileio/private/normals.m M /trunk/external/fieldtrip/fileio/private/read_mpi_ds.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_sdma.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_evolution.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_signals.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_spikes.m M /trunk/external/fieldtrip/fileio/private/refine.m M /trunk/external/fieldtrip/forward/ft_headmodel_localspheres.m M /trunk/external/fieldtrip/forward/ft_headmodel_singleshell.m M /trunk/external/fieldtrip/forward/ft_headmodel_singlesphere.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/icosahedron.m M /trunk/external/fieldtrip/forward/private/icosahedron162.m M /trunk/external/fieldtrip/forward/private/icosahedron2562.m M /trunk/external/fieldtrip/forward/private/icosahedron42.m M /trunk/external/fieldtrip/forward/private/icosahedron642.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_defaults.m A /trunk/external/fieldtrip/ft_denoise_dssp.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/private/icosahedron.m M /trunk/external/fieldtrip/plotting/private/icosahedron162.m M /trunk/external/fieldtrip/plotting/private/icosahedron2562.m M /trunk/external/fieldtrip/plotting/private/icosahedron42.m M /trunk/external/fieldtrip/plotting/private/icosahedron642.m A /trunk/external/fieldtrip/plotting/private/octahedron.m M /trunk/external/fieldtrip/plotting/private/refine.m A /trunk/external/fieldtrip/plotting/private/tetrahedron.m M /trunk/external/fieldtrip/private/icosahedron.m M /trunk/external/fieldtrip/private/icosahedron162.m M /trunk/external/fieldtrip/private/icosahedron2562.m M /trunk/external/fieldtrip/private/icosahedron42.m M /trunk/external/fieldtrip/private/icosahedron642.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/refine.m M /trunk/external/fieldtrip/private/warp_fsaverage.m M /trunk/external/fieldtrip/utilities/ft_compile_standalone.m M /trunk/external/fieldtrip/utilities/ft_datatype_timelock.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/icosahedron.m M /trunk/external/fieldtrip/utilities/private/icosahedron42.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/refine.m Update of external/fieldtrip to 76cb0e9. Reluctantly adding "compat" folder, which is opening a can of worms. To be discussed. ------------------------------------------------------------------------ r7434 | john | 2018-10-05 15:05:21 +0100 (Fri, 05 Oct 2018) | 5 lines Changed paths: M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c * Fixed the pushpull bug that Mikael foundi in shoot_diffeo3d.c, where I used an && instead of an ||. * Removed the unnecessary casting to single precision in shoot_optimN.c. * Cosmetic changes to shoot_regularisers.c, where integer constants were changed to doubles. ------------------------------------------------------------------------ r7435 | guillaume | 2018-10-08 11:09:11 +0100 (Mon, 08 Oct 2018) | 2 lines Changed paths: M /trunk/spm_figure.m Bug fix: disable access to command window in standalone mode. ------------------------------------------------------------------------ r7436 | spm | 2018-10-08 15:49:20 +0100 (Mon, 08 Oct 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_determine_units.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_determine_units.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_defacemesh.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_timelocksimulation.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_determine_units.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/prepare_mesh_cortexhull.m M /trunk/external/fieldtrip/private/rollback_provenance.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m Update of external/fieldtrip to ce5bdd3 ------------------------------------------------------------------------ r7437 | john | 2018-10-10 17:59:16 +0100 (Wed, 10 Oct 2018) | 2 lines Changed paths: M /trunk/@file_array/subsref.m * Prevent crashes when trying to access dimensions greater than the number of dimensions. Code now defaults to 1 for these (up to about 18 dimensions). ------------------------------------------------------------------------ r7438 | spm | 2018-10-10 18:04:40 +0100 (Wed, 10 Oct 2018) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m A /trunk/external/fieldtrip/fileio/private/events_tsv.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/read_besa_besa.m M /trunk/external/fieldtrip/fileio/private/read_brainstorm_data.m M /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/ft_headmodel_openmeeg.m M /trunk/external/fieldtrip/forward/ft_sensinterp_openmeeg.m M /trunk/external/fieldtrip/forward/ft_sysmat_openmeeg.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/leadsphere_all.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_componentanalysis.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_denoise_dssp.m M /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_headmovement.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/imotions2fieldtrip.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/harmony.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/mesh_spectrum.m M /trunk/external/fieldtrip/private/append_common.m M /trunk/external/fieldtrip/private/blockindx2cmbindx.m M /trunk/external/fieldtrip/private/mesh_spectrum.m M /trunk/external/fieldtrip/private/multivariate_decomp.m M /trunk/external/fieldtrip/private/warp_fsaverage.m M /trunk/external/fieldtrip/private/warp_fsinflated.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m A /trunk/external/fieldtrip/utilities/ft_struct2char.m M /trunk/external/fieldtrip/utilities/ft_struct2double.m M /trunk/external/fieldtrip/utilities/ft_struct2single.m A /trunk/external/fieldtrip/utilities/ft_struct2string.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/individual2sn.m Update of external/fieldtrip to 4b2d343 ------------------------------------------------------------------------ r7439 | john | 2018-10-10 18:19:31 +0100 (Wed, 10 Oct 2018) | 2 lines Changed paths: M /trunk/@file_array/subsref.m * Actually, the old way was perhaps better. ------------------------------------------------------------------------ r7440 | john | 2018-10-10 18:28:26 +0100 (Wed, 10 Oct 2018) | 3 lines Changed paths: M /trunk/@file_array/size.m * Allows calls to (for example) size(fa,1:5). This would be a nice feature for MATLAB's size() function to have. ------------------------------------------------------------------------ r7441 | guillaume | 2018-10-11 09:56:40 +0100 (Thu, 11 Oct 2018) | 2 lines Changed paths: M /trunk/spm_BIDS.m Enhancement: update of MEG filenames according to latest specs. ------------------------------------------------------------------------ r7442 | guillaume | 2018-10-11 11:31:38 +0100 (Thu, 11 Oct 2018) | 2 lines Changed paths: M /trunk/spm_figure.m Enhancement: do not display warning about OpenGL renderer. ------------------------------------------------------------------------ r7443 | vladimir | 2018-10-11 11:41:42 +0100 (Thu, 11 Oct 2018) | 1 line Changed paths: M /trunk/spm_eeg_convert.m Reinstating the hack for Biosemi because it's necessary for the SPM example dataset. A new condition was added that will hopefully will make this hack benign for other cases. ------------------------------------------------------------------------ r7444 | vladimir | 2018-10-12 14:24:04 +0100 (Fri, 12 Oct 2018) | 1 line Changed paths: M /trunk/spm_eeg_convert.m refinement of the hack for data from Manchester ------------------------------------------------------------------------ r7445 | vladimir | 2018-10-12 14:24:48 +0100 (Fri, 12 Oct 2018) | 1 line Changed paths: M /trunk/@meeg/clone.m M /trunk/@meeg/coor2D.m M /trunk/spm_eeg_planarchannelset.m Some recent fixes from my local version ------------------------------------------------------------------------ r7446 | karl | 2018-10-13 16:28:42 +0100 (Sat, 13 Oct 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_coupled_oscillators.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_self_entropy.m A /trunk/toolbox/DEM/KLDemo.m addition of information gain demo ------------------------------------------------------------------------ r7447 | karl | 2018-10-13 16:32:10 +0100 (Sat, 13 Oct 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_cells.m M /trunk/toolbox/DEM/DEM_cells_cells.m A /trunk/toolbox/DEM/DEM_path_integrals.m M /trunk/toolbox/DEM/spm_gamma_log_evidence.m Addition a path integral demo (under construction) and generalisation of gamma log evidence for rate and shape parameters ------------------------------------------------------------------------ r7448 | karl | 2018-10-15 10:30:10 +0100 (Mon, 15 Oct 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_path_integrals.m M /trunk/toolbox/DEM/KLDemo.m Revision to path integral demo ------------------------------------------------------------------------ r7449 | vladimir | 2018-10-16 14:52:04 +0100 (Tue, 16 Oct 2018) | 1 line Changed paths: M /trunk/@meeg/clone.m M /trunk/spm_eeg_tf.m Fix for the issue with files generated in FASST (thanks to Aaron) ------------------------------------------------------------------------ r7450 | guillaume | 2018-10-17 10:39:32 +0100 (Wed, 17 Oct 2018) | 3 lines Changed paths: M /trunk/spm_regions.m Bug fix: include xX.K in confounds during time-series extraction from concatenated GLMs. try/catch statements were removed in favour of if/else ones but xkcd 1172 or 1739 might now apply. ------------------------------------------------------------------------ r7451 | vladimir | 2018-10-17 15:48:56 +0100 (Wed, 17 Oct 2018) | 1 line Changed paths: M /trunk/spm_eeg_convert.m Minor fix ------------------------------------------------------------------------ r7452 | tim | 2018-10-17 16:29:54 +0100 (Wed, 17 Oct 2018) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_create_labels.m ------------------------------------------------------------------------ r7453 | christophe | 2018-10-18 16:42:33 +0100 (Thu, 18 Oct 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_tissue_volumes.m Slightly clearer name and help text for one entry. ------------------------------------------------------------------------ r7454 | karl | 2018-10-19 20:38:50 +0100 (Fri, 19 Oct 2018) | 1 line Changed paths: M /trunk/spm_sparse_regression.m M /trunk/toolbox/DEM/DEMO_SLR.m Sparse regression demo annotated ------------------------------------------------------------------------ r7455 | guillaume | 2018-10-22 13:34:12 +0100 (Mon, 22 Oct 2018) | 3 lines Changed paths: M /trunk/spm_create_vol.m Enhancement: save timing information in NIfTI header. See https://neurostars.org/t/2698 ------------------------------------------------------------------------ r7456 | guillaume | 2018-10-24 15:55:12 +0100 (Wed, 24 Oct 2018) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Enhancement: Standalone compilation with software OpenGL. ------------------------------------------------------------------------ r7457 | guillaume | 2018-10-24 16:12:05 +0100 (Wed, 24 Oct 2018) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Bug fix: mcc syntax for optional flags. ------------------------------------------------------------------------ r7458 | john | 2018-10-24 16:30:12 +0100 (Wed, 24 Oct 2018) | 5 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_noise_estimate.m M /trunk/toolbox/Longitudinal/spm_rice_mixture.m * Attempt to increase stability of spm_rice_mixture code. * spm_noise_estimate now also returns something akin to what spm_global does. Neither change has been extensively tested. ------------------------------------------------------------------------ r7459 | spm | 2018-10-27 10:49:15 +0100 (Sat, 27 Oct 2018) | 2 lines Changed paths: M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7460 | john | 2018-10-29 15:55:12 +0000 (Mon, 29 Oct 2018) | 11 lines Changed paths: M /trunk/config/spm_run_tissue_volumes.m M /trunk/spm_diffeo.m M /trunk/spm_smoothkern.m M /trunk/src/spm_diffeo.c M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/Longitudinal/spm_noise_estimate.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m M /trunk/toolbox/Shoot/spm_shoot_norm.m M /trunk/toolbox/Shoot/spm_shoot_update.m * Fixed src/spm_diffeo.c so that the 'samp' option does the same as the 'pullc' option. * toolbox/Longitudinal/spm_groupwise_ls.m now uses spm_diffeo with 'push' and 'pullc'. * spm_diffeo.m contains updated documentation. * toolbox/Shoot/spm_shoot_norm.m now uses spm_diffeo with 'pull'. * Simplified what gets displayed in toolbox/Shoot/spm_shoot_update.m. * Cosmetic (mlint) changes to toolbox/Longitudinal/tbx_cfg_longitudinal.m and toolbox/Longitudinal/spm_noise_estimate.m. * Changed documentation/comments for spm_smoothkern.m to reflect recent mailing list exchanges. * Fixed a bug in config/spm_run_tissue_volumes.m. ------------------------------------------------------------------------ r7461 | john | 2018-10-29 15:59:58 +0000 (Mon, 29 Oct 2018) | 2 lines Changed paths: M /trunk/toolbox/Shoot/spm_shoot3di.m M /trunk/toolbox/Shoot/spm_shoot_scalmom.m M /trunk/toolbox/Shoot/spm_shoot_template.m M /trunk/toolbox/Shoot/spm_shoot_update.m * Changes functions to use spm_diffeo('pullc',...) instead of spm_diffeo('samp',...) ------------------------------------------------------------------------ r7462 | spm | 2018-10-31 15:43:31 +0000 (Wed, 31 Oct 2018) | 2 lines Changed paths: M /trunk/matlabbatch/private/cfg_justify.m Temporary workaround for Octave. ------------------------------------------------------------------------ r7463 | guillaume | 2018-10-31 16:55:54 +0000 (Wed, 31 Oct 2018) | 1 line Changed paths: M /trunk/spm_diffeo.mexa64 M /trunk/spm_field.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34-12. ------------------------------------------------------------------------ r7464 | john | 2018-10-31 16:57:27 +0000 (Wed, 31 Oct 2018) | 4 lines Changed paths: M /trunk/src/shoot_optimN.c M /trunk/src/shoot_optimN.h M /trunk/src/spm_field.c * Added the option to simply do a voxel-wise matrix division: (A(x)+I\lambda)^{-1} g(x). This has potential applications in many voxelwise fitting problems. ------------------------------------------------------------------------ r7465 | guillaume | 2018-11-01 12:15:59 +0000 (Thu, 01 Nov 2018) | 2 lines Changed paths: M /trunk/@gifti/saveas.m New feature: Export gifti meshes as FreeSurfer files. ------------------------------------------------------------------------ r7466 | spm | 2018-11-01 12:55:07 +0000 (Thu, 01 Nov 2018) | 1 line Changed paths: M /trunk/spm_field.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34-12. ------------------------------------------------------------------------ r7467 | spm | 2018-11-01 13:11:55 +0000 (Thu, 01 Nov 2018) | 2 lines Changed paths: M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7468 | spm | 2018-11-01 13:25:48 +0000 (Thu, 01 Nov 2018) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/init.mexw32 M /trunk/@file_array/private/mat2file.mexw32 M /trunk/@gifti/private/zstream.mexw32 M /trunk/@xmltree/private/xml_findstr.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_jsonread.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_reduce.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw32 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw32 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw32 M /trunk/toolbox/FieldMap/pm_pad.mexw32 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7469 | spm | 2018-11-01 13:38:02 +0000 (Thu, 01 Nov 2018) | 1 line Changed paths: M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_field.mexmaci64 Compilation with MATLAB R2017a, Clang 6.0 and OS X 10.9.5 ------------------------------------------------------------------------ r7470 | guillaume | 2018-11-01 17:40:18 +0000 (Thu, 01 Nov 2018) | 2 lines Changed paths: A /trunk/@gifti/private/mz3_write.m M /trunk/@gifti/saveas.m New feature: Export gifti meshes as MZ3-formatted files. ------------------------------------------------------------------------ r7471 | guillaume | 2018-11-02 11:14:39 +0000 (Fri, 02 Nov 2018) | 2 lines Changed paths: M /trunk/@gifti/gifti.m M /trunk/@gifti/private/read_freesurfer_file.m Enhancement: aslo support *.mgz files. ------------------------------------------------------------------------ r7472 | john | 2018-11-05 13:54:50 +0000 (Mon, 05 Nov 2018) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m * Included Evelyne Balteau's fix for better handling of Philips multiframe data. ------------------------------------------------------------------------ r7473 | guillaume | 2018-11-06 10:26:44 +0000 (Tue, 06 Nov 2018) | 5 lines Changed paths: M /trunk/matlabbatch/@cfg_item/gencode_item.m M /trunk/matlabbatch/cfg_ui.fig M /trunk/matlabbatch/cfg_ui_util.m M /trunk/matlabbatch/private/cfg_textfill.m M /trunk/matlabbatch/private/num2str.m Enhancement: increased compatibility: * resave cfg_ui.fig in R2018b (load cfg_ui.fig -mat; save cfg_ui.fig hgS_070000 -v6) * switch between isequaln/isequalwithequalnans * workaroud for Octave if gcf/gcbf returns empty unexpectedly. ------------------------------------------------------------------------ r7474 | peter | 2018-11-07 12:45:06 +0000 (Wed, 07 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_peb_review.m A /trunk/tests/test_spm_dcm_peb_review.m Minor updates to spm_dcm_peb_review.m . Now defaults to free energy based thresholding for BMA results. Added clearer warnings for parameters which cannot be thresholded (which are now set to Pp=NaN). ------------------------------------------------------------------------ r7475 | guillaume | 2018-11-07 13:03:49 +0000 (Wed, 07 Nov 2018) | 2 lines Changed paths: A /trunk/README.md (from /trunk/README.txt:7474) D /trunk/README.txt M /trunk/help/index.html M /trunk/spm.m M /trunk/spm_Welcome.m M /trunk/spm_help.m Refactoring: use Markdown for README file. ------------------------------------------------------------------------ r7476 | peter | 2018-11-07 15:17:39 +0000 (Wed, 07 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_peb.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_dcm_peb_review.m Minor PEB updates: removed BMA free energy from spm_dcm_bmr_all.m, added option for selecting number of iterations in spm_dcm_peb.m, clarified x-axis in spm_dcm_peb_review plots, update to metadata in spm_dcm_peb_bmc.m to support plotting. ------------------------------------------------------------------------ r7477 | peter | 2018-11-08 12:49:27 +0000 (Thu, 08 Nov 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_dcm_peb.m Minor updates to DCM / PEB batches ------------------------------------------------------------------------ r7478 | guillaume | 2018-11-08 14:51:54 +0000 (Thu, 08 Nov 2018) | 2 lines Changed paths: A /trunk/help/js/showdown.min.js M /trunk/spm_Welcome.m M /trunk/spm_browser.m M /trunk/spm_help.m M /trunk/spm_jsonwrite.m M /trunk/tests/test_spm_jsonwrite.m New feature: display help text formatted in Markdown. Bug fix: remove extra comma in jsonwrite. ------------------------------------------------------------------------ r7479 | peter | 2018-11-09 14:17:33 +0000 (Fri, 09 Nov 2018) | 1 line Changed paths: M /trunk/config/spm_cfg_dcm_est.m M /trunk/config/spm_cfg_dcm_fmri.m M /trunk/config/spm_cfg_dcm_peb.m M /trunk/spm_dcm_bmc.m M /trunk/spm_dcm_estimate.m M /trunk/spm_dcm_load.m M /trunk/spm_dcm_peb_review.m M /trunk/tests/test_spm_cfg_dcm_est.m M /trunk/tests/test_spm_cfg_dcm_fmri.m M /trunk/tests/test_spm_cfg_dcm_peb.m M /trunk/tests/test_spm_dcm_identify.m M /trunk/tests/test_spm_dcm_peb.m DCM fixes: Fixed dependencies in DCM/PEB batches, changed spm_dcm_estimate.m not to auto-save the DCM with today's date, improved layout in spm_dcm_peb_review.m ------------------------------------------------------------------------ r7480 | guillaume | 2018-11-09 14:54:45 +0000 (Fri, 09 Nov 2018) | 2 lines Changed paths: M /trunk/spm_dicom_metadata.m Enhancement: store MATLAB version in metadata during DICOM conversion. Thanks to Evelyne B. ------------------------------------------------------------------------ r7481 | peter | 2018-11-09 15:36:57 +0000 (Fri, 09 Nov 2018) | 1 line Changed paths: A /trunk/spm_dcm_csd_Q.m (from /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m:7480) M /trunk/spm_dcm_ui.m M /trunk/tests/end2end_restingfMRI.m A /trunk/tests/test_spm_dcm_fmri_csd.m D /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m Moved spm_dcm_csd_Q.m from the MEEG toolbox to root as it's used by DCM for fMRI. Incremented DCM version number from 12 to 12.5. ------------------------------------------------------------------------ r7482 | guillaume | 2018-11-12 12:18:08 +0000 (Mon, 12 Nov 2018) | 2 lines Changed paths: M /trunk/spm_dicom_metadata.m Bug fix: better storing of provenance metadata. Thanks to Evelyne B. ------------------------------------------------------------------------ r7483 | guillaume | 2018-11-12 13:19:31 +0000 (Mon, 12 Nov 2018) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m M /trunk/external/fieldtrip/ft_defaults.m Enhancement: remove warnings for standalone version. ------------------------------------------------------------------------ r7484 | guillaume | 2018-11-12 15:03:28 +0000 (Mon, 12 Nov 2018) | 2 lines Changed paths: M /trunk/external/fieldtrip/ft_defaults.m Bug fix: typo. ------------------------------------------------------------------------ r7485 | guillaume | 2018-11-14 10:31:57 +0000 (Wed, 14 Nov 2018) | 2 lines Changed paths: M /trunk/man/Makefile M /trunk/man/manual.pdf Doc: new compilation of the PDF manual. ------------------------------------------------------------------------ r7486 | guillaume | 2018-11-14 11:10:29 +0000 (Wed, 14 Nov 2018) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.5. ------------------------------------------------------------------------ r7488 | peter | 2018-11-15 09:12:25 +0000 (Thu, 15 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_bdc.m Update to spm_dcm_bdc.m to fix implementation of KL divergence and add some options ------------------------------------------------------------------------ r7489 | peter | 2018-11-15 09:58:51 +0000 (Thu, 15 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_bdc.m Removed dependency on Stats toolbox ------------------------------------------------------------------------ r7490 | thomas | 2018-11-21 10:32:09 +0000 (Wed, 21 Nov 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_check.m Added checks for linkC and linkE fields (empirical priors for preferences and policies) ------------------------------------------------------------------------ r7491 | thomas | 2018-11-21 10:32:54 +0000 (Wed, 21 Nov 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Added option for policy priors/preferences conditioned upon higher level states ------------------------------------------------------------------------ r7492 | thomas | 2018-11-21 12:40:25 +0000 (Wed, 21 Nov 2018) | 1 line Changed paths: A /trunk/toolbox/DEM/spm_multinomial_log_evidence.m Added log-evidence function for multinomial distribution ------------------------------------------------------------------------ r7493 | thomas | 2018-11-21 12:47:55 +0000 (Wed, 21 Nov 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_gamma_log_evidence.m Modified gamma log evidence so that reduced priors may be specified by changing rate and shape parameters together ------------------------------------------------------------------------ r7494 | thomas | 2018-11-21 13:39:35 +0000 (Wed, 21 Nov 2018) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Improved approximation to information gain for Dirichlet distributions ------------------------------------------------------------------------ r7495 | peter | 2018-11-22 15:52:07 +0000 (Thu, 22 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_bdc.m Updated help text ------------------------------------------------------------------------ r7496 | john | 2018-11-23 11:14:43 +0000 (Fri, 23 Nov 2018) | 3 lines Changed paths: M /trunk/toolbox/Shoot/spm_shoot_norm.m * Wasn't taking into account that affine transforms mapping between voxels in original and imported scans could have a negative determinant (thanks Gabriel). ------------------------------------------------------------------------ r7497 | karl | 2018-11-24 17:00:25 +0000 (Sat, 24 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_display.m M /trunk/spm_dcm_fmri_csd.m M /trunk/spm_dcm_fmri_csd_results.m M /trunk/spm_dcm_fmri_priors.m M /trunk/tests/ROBOT_DCM_fMRI.m M /trunk/toolbox/DEM/DEM_HB_and_LE.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m A /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m (from /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m:7453) Minor changes to DCM for fMRI CSD - functional connectivity added to results ------------------------------------------------------------------------ r7498 | karl | 2018-11-24 17:07:36 +0000 (Sat, 24 Nov 2018) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m M /trunk/toolbox/DEM/FEP_self_entropy.m Minor annotation changes ------------------------------------------------------------------------ r7499 | guillaume | 2018-11-28 11:57:34 +0000 (Wed, 28 Nov 2018) | 2 lines Changed paths: M /trunk/matlabbatch/cfg_basicio/cfg_run_gunzip_files.m M /trunk/matlabbatch/cfg_basicio/cfg_run_gzip_files.m Bug fix: revert r6840. ------------------------------------------------------------------------ r7500 | vladimir | 2018-11-28 14:42:14 +0000 (Wed, 28 Nov 2018) | 1 line Changed paths: M /trunk/spm_eeg_artefact_eyeblink.m Bug Fix (thanks to Muhammad Parvaz) ------------------------------------------------------------------------ r7501 | guillaume | 2018-11-30 12:16:58 +0000 (Fri, 30 Nov 2018) | 4 lines Changed paths: M /trunk/@file_array/double.m A /trunk/@file_array/full.m M /trunk/@file_array/isnan.m M /trunk/@file_array/numeric.m Enhancement: 'numeric' method renamed 'full' for compatibility with numeric arrays. If X is a numeric array or a file_array, full(X) can be used to always return a numeric array instead of using X(). It prevents warning MATLAB:subscripting:noSubscriptsSpecified. ------------------------------------------------------------------------ r7502 | karl | 2018-12-02 12:28:03 +0000 (Sun, 02 Dec 2018) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_FEP_Lorenz.m M /trunk/toolbox/DEM/DEM_HB_and_LE.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Small physics Demo added to DEM Toolbox ------------------------------------------------------------------------ r7503 | guillaume | 2018-12-03 12:20:12 +0000 (Mon, 03 Dec 2018) | 2 lines Changed paths: M /trunk/spm_defaults.m Enhancement: increasing defaults.stats.maxmem to 2^30. ------------------------------------------------------------------------ r7504 | guillaume | 2018-12-03 13:17:49 +0000 (Mon, 03 Dec 2018) | 4 lines Changed paths: M /trunk/@nifti/private/read_hdr.m Bug fix: attempt at fixing error reported here https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;a90b9ea8.1811 where files are searched on the MATLAB search path. ------------------------------------------------------------------------ r7505 | john | 2018-12-11 11:45:51 +0000 (Tue, 11 Dec 2018) | 3 lines Changed paths: M /trunk/spm_get_closest_affine.m * Simplified - and fixed so it works better when weights are further from binary. ------------------------------------------------------------------------ r7506 | guillaume | 2018-12-11 15:30:56 +0000 (Tue, 11 Dec 2018) | 2 lines Changed paths: M /trunk/spm_input.m Bug fix: late fix following HG2. ------------------------------------------------------------------------ r7507 | john | 2018-12-12 10:51:32 +0000 (Wed, 12 Dec 2018) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m * Included all of Evelyne's changes. ------------------------------------------------------------------------ r7508 | thomas | 2018-12-21 09:49:44 +0000 (Fri, 21 Dec 2018) | 1 line Changed paths: M /trunk/spm_betaln.m minor modification to work with 6D array (previously worked up to 5D) ------------------------------------------------------------------------ r7509 | guillaume | 2019-01-02 14:54:14 +0000 (Wed, 02 Jan 2019) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/LICENCE.txt M /trunk/README.md M /trunk/help/index.html M /trunk/spm_Menu.fig Doc: mention 2019. ------------------------------------------------------------------------ r7510 | guillaume | 2019-01-02 15:06:12 +0000 (Wed, 02 Jan 2019) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/@file_array/private/mat2file.c Enhancement: define internal functions as static. ------------------------------------------------------------------------ r7511 | karl | 2019-01-05 21:13:16 +0000 (Sat, 05 Jan 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_FEP_Lorenz.m Improvements to stochastic chaos demonstration routines ------------------------------------------------------------------------ r7512 | karl | 2019-01-05 21:15:16 +0000 (Sat, 05 Jan 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_FEP_Least_Action.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/spm_voice.m A /trunk/toolbox/DEM/spm_voice_ff.m A /trunk/toolbox/DEM/spm_voice_iff.m A /trunk/toolbox/DEM/spm_voice_likelihood.m A /trunk/toolbox/DEM/spm_voice_read.m Additional path integral demo for DEM toolbox and provisional voice recognition routines ------------------------------------------------------------------------ r7513 | guillaume | 2019-01-15 15:17:29 +0000 (Tue, 15 Jan 2019) | 2 lines Changed paths: M /trunk/@gifti/plot.m Bug fix: reverting some of the changes from r7380 for backward compatibility. Thanks Tim. ------------------------------------------------------------------------ r7514 | guillaume | 2019-01-16 16:18:52 +0000 (Wed, 16 Jan 2019) | 2 lines Changed paths: M /trunk/spm_mesh_refine.m Enhancement: faster mesh refinement if input is a gifti object. Thanks Tim! ------------------------------------------------------------------------ r7515 | guillaume | 2019-01-17 17:13:03 +0000 (Thu, 17 Jan 2019) | 2 lines Changed paths: M /trunk/spm_input.m Buf fix: fix syntax error introduced in r7506. ------------------------------------------------------------------------ r7516 | guillaume | 2019-01-18 10:55:51 +0000 (Fri, 18 Jan 2019) | 4 lines Changed paths: M /trunk/src/Makefile Enhancement: Force make to run serially, even if the '-j' option is used. Thanks to Ankur S: https://github.com/spm/spm12/pull/1 https://www.gnu.org/software/make/manual/make.html#index-_002eNOTPARALLEL ------------------------------------------------------------------------ r7517 | spm | 2019-01-23 10:26:47 +0000 (Wed, 23 Jan 2019) | 2 lines Changed paths: M /trunk/LICENCE.txt Doc: Update terms of GNU GPL. ------------------------------------------------------------------------ r7518 | guillaume | 2019-01-24 11:14:40 +0000 (Thu, 24 Jan 2019) | 2 lines Changed paths: M /trunk/spm_check_installation.m M /trunk/spm_figure.m Enhancement: set Help menu's HandleVisibility to 'off'. ------------------------------------------------------------------------ r7519 | tim | 2019-01-30 18:15:01 +0000 (Wed, 30 Jan 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools D /trunk/toolbox/MEEGtools/spm_opm_BIDS.m D /trunk/toolbox/MEEGtools/spm_opm_convert.m M /trunk/toolbox/MEEGtools/spm_opm_create.m D /trunk/toolbox/MEEGtools/spm_opm_denoise.m ------------------------------------------------------------------------ r7520 | tim | 2019-01-30 18:15:16 +0000 (Wed, 30 Jan 2019) | 1 line Changed paths: A /trunk/toolbox/MEEGtools/spm_mesh_pack_points.m ------------------------------------------------------------------------ r7521 | tim | 2019-01-30 18:16:03 +0000 (Wed, 30 Jan 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_opm_create.m ------------------------------------------------------------------------ r7522 | tim | 2019-01-30 18:16:40 +0000 (Wed, 30 Jan 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m ------------------------------------------------------------------------ r7523 | guillaume | 2019-02-01 11:31:08 +0000 (Fri, 01 Feb 2019) | 1 line Changed paths: M /trunk/@file_array/private/init.c M /trunk/@gifti/private/zstream.c M /trunk/src/Makefile.var Enhancements: Windows compilation on alternative platforms. ------------------------------------------------------------------------ r7524 | spm | 2019-02-01 13:32:25 +0000 (Fri, 01 Feb 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_read_spike.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_spike.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_spike.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/hasyokogawa.m A /trunk/external/fieldtrip/fileio/private/load_curry_data_file.m M /trunk/external/fieldtrip/fileio/private/mne2grad.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vhdr.m M /trunk/external/fieldtrip/fileio/private/read_ctf_mri.m M /trunk/external/fieldtrip/fileio/private/read_ctf_mri4.m D /trunk/external/fieldtrip/fileio/private/read_nihonkohden_hdr.m M /trunk/external/fieldtrip/fileio/private/read_nihonkohden_m00.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m D /trunk/external/fieldtrip/forward/ft_average_sens.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m D /trunk/external/fieldtrip/forward/ft_sensinterp_openmeeg.m D /trunk/external/fieldtrip/forward/ft_sysmat_openmeeg.m D /trunk/external/fieldtrip/forward/ft_transform_headshape.m D /trunk/external/fieldtrip/forward/ft_transform_sens.m D /trunk/external/fieldtrip/forward/ft_transform_vol.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_notification.m A /trunk/external/fieldtrip/forward/private/getdimord.m A /trunk/external/fieldtrip/forward/private/getdimsiz.m M /trunk/external/fieldtrip/forward/private/hasyokogawa.m M /trunk/external/fieldtrip/forward/private/icosahedron.m D /trunk/external/fieldtrip/ft_anonimizedata.m A /trunk/external/fieldtrip/ft_anonymizedata.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_channelnormalise.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacemesh.m M /trunk/external/fieldtrip/ft_defacevolume.m A /trunk/external/fieldtrip/ft_denoise_prewhiten.m M /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_mvaranalysis.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_rejectvisual.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_statistics_crossvalidate.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/ft_volumewrite.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m A /trunk/external/fieldtrip/inverse/private/ft_inv.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/inverse/private/hasyokogawa.m M /trunk/external/fieldtrip/plotting/ft_plot_dipole.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/ft_plot_text.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m M /trunk/external/fieldtrip/plotting/private/fixpos.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/icosahedron.m M /trunk/external/fieldtrip/plotting/private/intersect_plane.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/private/clusterstat.m M /trunk/external/fieldtrip/private/define_biff.m M /trunk/external/fieldtrip/private/determine_griddim.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m A /trunk/external/fieldtrip/private/ft_inv.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/icosahedron.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/interp_ungridded.m M /trunk/external/fieldtrip/private/isalmostequal.m M /trunk/external/fieldtrip/private/mesh_spherify.m M /trunk/external/fieldtrip/private/prepare_mesh_cortexhull.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/prepare_mesh_tetrahedral.m M /trunk/external/fieldtrip/private/rejectvisual_channel.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/rejectvisual_trial.m M /trunk/external/fieldtrip/private/resampledesign.m M /trunk/external/fieldtrip/private/specest_nanfft.m M /trunk/external/fieldtrip/private/statistics_wrapper.m M /trunk/external/fieldtrip/private/warp_dykstra2012.m M /trunk/external/fieldtrip/specest/private/ft_notification.m D /trunk/external/fieldtrip/statfun/private/ft_notification.m D /trunk/external/fieldtrip/statfun/private/ft_warning.m A /trunk/external/fieldtrip/trialfun/ft_trialfun_balert.m A /trunk/external/fieldtrip/utilities/ft_average_sens.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_convert_coordsys.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_datatype_spike.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_documentationindex.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_fetch_data.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m A /trunk/external/fieldtrip/utilities/ft_save_workspace.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m A /trunk/external/fieldtrip/utilities/ft_transform_headshape.m A /trunk/external/fieldtrip/utilities/ft_transform_sens.m A /trunk/external/fieldtrip/utilities/ft_transform_vol.m M /trunk/external/fieldtrip/utilities/ft_warp_error.m M /trunk/external/fieldtrip/utilities/hasyokogawa.m A /trunk/external/fieldtrip/utilities/markdown2matlab.m A /trunk/external/fieldtrip/utilities/matlab2markdown.m M /trunk/external/fieldtrip/utilities/private/align_ctf2acpc.m M /trunk/external/fieldtrip/utilities/private/align_fsaverage2mni.m M /trunk/external/fieldtrip/utilities/private/align_neuromag2acpc.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/fixsegmentation.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/icosahedron.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/randomseed.m update of external/fieldtrip to cef3396 ------------------------------------------------------------------------ r7525 | peter | 2019-02-05 16:47:50 +0000 (Tue, 05 Feb 2019) | 1 line Changed paths: M /trunk/spm_fx_fmri.m Fix to enable single region fMRI DCMs ------------------------------------------------------------------------ r7526 | guillaume | 2019-02-06 14:33:18 +0000 (Wed, 06 Feb 2019) | 2 lines Changed paths: M /trunk/spm_jsonwrite.m M /trunk/tests/test_spm_jsonwrite.m Enhancement: improved compatibility with jsonencode. ------------------------------------------------------------------------ r7527 | karl | 2019-02-06 19:12:56 +0000 (Wed, 06 Feb 2019) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/spm_cross.m M /trunk/spm_wft.m M /trunk/toolbox/dcm_meeg/spm_tfm_priors.m Minor edits to annotation ------------------------------------------------------------------------ r7528 | karl | 2019-02-06 19:19:49 +0000 (Wed, 06 Feb 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_ff.m A /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m A /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_read.m A /trunk/toolbox/DEM/spm_voice_speak.m A /trunk/toolbox/DEM/spm_voice_test.m A /trunk/toolbox/DEM/spm_voice_warp.m development work on voice recognition routines ------------------------------------------------------------------------ r7529 | karl | 2019-02-06 19:21:38 +0000 (Wed, 06 Feb 2019) | 1 line Changed paths: M /trunk/toolbox/dcm_meeg/spm_csd_mtf.m Minor but fix to redundant checking ------------------------------------------------------------------------ r7530 | karl | 2019-02-07 10:41:59 +0000 (Thu, 07 Feb 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_test.m minor updates ------------------------------------------------------------------------ r7531 | vladimir | 2019-02-08 14:50:28 +0000 (Fri, 08 Feb 2019) | 1 line Changed paths: M /trunk/spm_eeg_project3D.m minor fix - the 'keep' option doesn't work with many identical locations ------------------------------------------------------------------------ r7532 | guillaume | 2019-02-14 12:03:24 +0000 (Thu, 14 Feb 2019) | 4 lines Changed paths: M /trunk/@file_array/private/Makefile M /trunk/@gifti/private/Makefile M /trunk/@xmltree/private/Makefile M /trunk/external/Makefile.fieldtrip M /trunk/external/bemcp/Makefile M /trunk/src/Makefile M /trunk/src/Makefile.var M /trunk/src/spm_cat.c M /trunk/src/spm_gamrnd.c M /trunk/src/spm_jsonread.c M /trunk/src/spm_mapping.c M /trunk/src/spm_voronoi.c M /trunk/toolbox/FieldMap/Makefile M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.c Enhancement: Slight reorganisation of Makefile and removed a few compilation warnings. * use MEXEXT instead of SUF * MEXBIN can be defined externally ------------------------------------------------------------------------ r7533 | thomas | 2019-02-20 14:35:41 +0000 (Wed, 20 Feb 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/MDP_DEM_Oculomotion_Pharma_demo.m M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m Added oculomotor active inference demo ------------------------------------------------------------------------ r7534 | guillaume | 2019-02-20 17:09:45 +0000 (Wed, 20 Feb 2019) | 2 lines Changed paths: M /trunk/config/spm_make_standalone.m Enhancement: Adjustments in FieldTrip for standalone compilation. ------------------------------------------------------------------------ r7535 | karl | 2019-03-03 20:27:09 +0000 (Sun, 03 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m A /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m A /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_frequency.m A /trunk/toolbox/DEM/spm_voice_fundamental.m A /trunk/toolbox/DEM/spm_voice_get_LEX.m A /trunk/toolbox/DEM/spm_voice_get_word.m A /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m M /trunk/toolbox/DEM/spm_voice_warp.m Development work on voice recognition schemes ------------------------------------------------------------------------ r7536 | karl | 2019-03-03 21:38:19 +0000 (Sun, 03 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m A /trunk/toolbox/DEM/spm_voice_listen.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_speak.m Further update to voice recognition schemes ------------------------------------------------------------------------ r7537 | spm | 2019-03-06 10:29:49 +0000 (Wed, 06 Mar 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/README M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_granger.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_powcorr_ortho.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_wpli.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson.m M /trunk/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_header.m A /trunk/external/fieldtrip/fileio/ft_read_headmodel.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_read_vol.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/ft_write_data.m A /trunk/external/fieldtrip/fileio/private/ama2headmodel.m D /trunk/external/fieldtrip/fileio/private/ama2vol.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/fixpos.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m D /trunk/external/fieldtrip/fileio/private/ft_datatype_vol.m M /trunk/external/fieldtrip/fileio/private/ft_determine_units.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m A /trunk/external/fieldtrip/fileio/private/ft_headmodeltype.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m D /trunk/external/fieldtrip/fileio/private/ft_voltype.m M /trunk/external/fieldtrip/fileio/private/getdatfield.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/in_fopen_manscan.m M /trunk/external/fieldtrip/fileio/private/loadvar.m A /trunk/external/fieldtrip/fileio/private/mat2ades.m M /trunk/external/fieldtrip/fileio/private/normals.m M /trunk/external/fieldtrip/fileio/private/pos2dim.m M /trunk/external/fieldtrip/fileio/private/pos2transform.m M /trunk/external/fieldtrip/fileio/private/read_4d_hdr.m M /trunk/external/fieldtrip/fileio/private/read_ctf_hdm.m M /trunk/external/fieldtrip/fileio/private/read_nervus_data.m M /trunk/external/fieldtrip/fileio/private/read_nervus_header.m M /trunk/external/fieldtrip/fileio/private/read_ricoh_event.m M /trunk/external/fieldtrip/fileio/private/write_brainvision_eeg.m A /trunk/external/fieldtrip/fileio/private/yokogawa2headmodel.m D /trunk/external/fieldtrip/fileio/private/yokogawa2vol.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/ft_determine_units.m M /trunk/external/fieldtrip/forward/ft_headmodel_asa.m M /trunk/external/fieldtrip/forward/ft_headmodel_dipoli.m M /trunk/external/fieldtrip/forward/ft_headmodel_fns.m M /trunk/external/fieldtrip/forward/ft_headmodel_halfspace.m M /trunk/external/fieldtrip/forward/ft_headmodel_interpolate.m A /trunk/external/fieldtrip/forward/ft_headmodeltype.m A /trunk/external/fieldtrip/forward/ft_inside_headmodel.m M /trunk/external/fieldtrip/forward/ft_inside_vol.m M /trunk/external/fieldtrip/forward/ft_prepare_vol_sens.m M /trunk/external/fieldtrip/forward/ft_sourcedepth.m M /trunk/external/fieldtrip/forward/ft_voltype.m A /trunk/external/fieldtrip/forward/private/ama2headmodel.m D /trunk/external/fieldtrip/forward/private/ama2vol.m A /trunk/external/fieldtrip/forward/private/eeg_halfspace_dipole.m D /trunk/external/fieldtrip/forward/private/eeg_halfspace_medium_leadfield.m M /trunk/external/fieldtrip/forward/private/eeg_halfspace_monopole.m A /trunk/external/fieldtrip/forward/private/eeg_infinite_dipole.m M /trunk/external/fieldtrip/forward/private/eeg_infinite_monopole.m M /trunk/external/fieldtrip/forward/private/eeg_leadfieldb.m M /trunk/external/fieldtrip/forward/private/eeg_slab_monopole.m M /trunk/external/fieldtrip/forward/private/fixpos.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/getdimord.m M /trunk/external/fieldtrip/forward/private/headsurface.m D /trunk/external/fieldtrip/forward/private/inf_medium_leadfield.m M /trunk/external/fieldtrip/forward/private/normals.m M /trunk/external/fieldtrip/forward/private/projecttri.m M /trunk/external/fieldtrip/ft_analysispipeline.m M /trunk/external/fieldtrip/ft_appenddata.m M /trunk/external/fieldtrip/ft_artifact_clip.m M /trunk/external/fieldtrip/ft_artifact_ecg.m M /trunk/external/fieldtrip/ft_artifact_eog.m M /trunk/external/fieldtrip/ft_artifact_jump.m M /trunk/external/fieldtrip/ft_artifact_muscle.m M /trunk/external/fieldtrip/ft_artifact_nan.m M /trunk/external/fieldtrip/ft_artifact_threshold.m M /trunk/external/fieldtrip/ft_artifact_tms.m M /trunk/external/fieldtrip/ft_artifact_zvalue.m M /trunk/external/fieldtrip/ft_channelrepair.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_definetrial.m M /trunk/external/fieldtrip/ft_denoise_dssp.m M /trunk/external/fieldtrip/ft_denoise_prewhiten.m A /trunk/external/fieldtrip/ft_denoise_ssp.m M /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_detect_movement.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_electrodeplacement.m M /trunk/external/fieldtrip/ft_electroderealign.m M /trunk/external/fieldtrip/ft_examplefunction.m M /trunk/external/fieldtrip/ft_globalmeanfield.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_interpolatenan.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_math.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_meshrealign.m M /trunk/external/fieldtrip/ft_movieplotER.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_neighbourplot.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_removetemplateartifact.m A /trunk/external/fieldtrip/ft_reproducescript.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_scalpcurrentdensity.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourcedescriptives.m M /trunk/external/fieldtrip/ft_sourcegrandaverage.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_sourcestatistics.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_topoplotTFR.m M /trunk/external/fieldtrip/ft_volumebiascorrect.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_wizard.m M /trunk/external/fieldtrip/inverse/beamformer_dics.m M /trunk/external/fieldtrip/inverse/beamformer_lcmv.m M /trunk/external/fieldtrip/inverse/beamformer_pcc.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/dipole_fit.m M /trunk/external/fieldtrip/inverse/ft_eloreta.m M /trunk/external/fieldtrip/inverse/ft_sloreta.m M /trunk/external/fieldtrip/inverse/harmony.m M /trunk/external/fieldtrip/inverse/minimumnormestimate.m M /trunk/external/fieldtrip/inverse/music.m D /trunk/external/fieldtrip/inverse/private/find_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m A /trunk/external/fieldtrip/inverse/private/ft_headmodeltype.m A /trunk/external/fieldtrip/inverse/private/ft_inside_headmodel.m D /trunk/external/fieldtrip/inverse/private/ft_inside_vol.m M /trunk/external/fieldtrip/inverse/private/ft_inv.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m D /trunk/external/fieldtrip/inverse/private/ft_voltype.m M /trunk/external/fieldtrip/inverse/residualvariance.m M /trunk/external/fieldtrip/loreta2fieldtrip.m M /trunk/external/fieldtrip/nutmeg2fieldtrip.m M /trunk/external/fieldtrip/plotting/ft_plot_axes.m A /trunk/external/fieldtrip/plotting/ft_plot_headmodel.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_ortho.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_topo.m M /trunk/external/fieldtrip/plotting/ft_plot_topo3d.m M /trunk/external/fieldtrip/plotting/ft_plot_vol.m A /trunk/external/fieldtrip/plotting/private/combineClusters.m A /trunk/external/fieldtrip/plotting/private/dist.m A /trunk/external/fieldtrip/plotting/private/extract_contour.m A /trunk/external/fieldtrip/plotting/private/findcluster.m M /trunk/external/fieldtrip/plotting/private/fixpos.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_determine_units.m A /trunk/external/fieldtrip/plotting/private/ft_headmodeltype.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m D /trunk/external/fieldtrip/plotting/private/ft_voltype.m M /trunk/external/fieldtrip/plotting/private/headsurface.m A /trunk/external/fieldtrip/plotting/private/normals.m M /trunk/external/fieldtrip/plotting/private/projecttri.m A /trunk/external/fieldtrip/plotting/private/solid_angle.m A /trunk/external/fieldtrip/plotting/private/surfaceorientation.m A /trunk/external/fieldtrip/plotting/private/triangle2connectivity.m M /trunk/external/fieldtrip/preproc/ft_preproc_resample.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/private/blockindx2cmbindx.m M /trunk/external/fieldtrip/private/fixpos.m M /trunk/external/fieldtrip/private/ft_fetch_sens.m D /trunk/external/fieldtrip/private/ft_fetch_vol.m M /trunk/external/fieldtrip/private/ft_inv.m M /trunk/external/fieldtrip/private/getdatfield.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/headsurface.m M /trunk/external/fieldtrip/private/ignorefields.m M /trunk/external/fieldtrip/private/lbex.m M /trunk/external/fieldtrip/private/loadvar.m M /trunk/external/fieldtrip/private/mollify.m M /trunk/external/fieldtrip/private/normals.m M /trunk/external/fieldtrip/private/patchsvd.m M /trunk/external/fieldtrip/private/pos2dim.m M /trunk/external/fieldtrip/private/pos2transform.m M /trunk/external/fieldtrip/private/prepare_headmodel.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/prepare_mesh_manual.m M /trunk/external/fieldtrip/private/projecttri.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/savevar.m M /trunk/external/fieldtrip/private/sel50p.m M /trunk/external/fieldtrip/private/sphericalSplineInterpolate.m M /trunk/external/fieldtrip/private/univariate2bivariate.m M /trunk/external/fieldtrip/private/warp_fsaverage.m A /trunk/external/fieldtrip/private/warp_fsaverage_sym.m M /trunk/external/fieldtrip/private/warp_hermes2010.m M /trunk/external/fieldtrip/spass2fieldtrip.m M /trunk/external/fieldtrip/specest/ft_specest_mtmfft.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/spm2fieldtrip.m M /trunk/external/fieldtrip/statfun/ft_statfun_depsamplesFunivariate.m M /trunk/external/fieldtrip/utilities/ft_average_sens.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_source.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_fetch_header.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_postamble.m M /trunk/external/fieldtrip/utilities/ft_preamble.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_source2full.m M /trunk/external/fieldtrip/utilities/ft_source2grid.m M /trunk/external/fieldtrip/utilities/ft_test.m M /trunk/external/fieldtrip/utilities/ft_transform_geometry.m A /trunk/external/fieldtrip/utilities/ft_transform_headmodel.m M /trunk/external/fieldtrip/utilities/ft_transform_headshape.m M /trunk/external/fieldtrip/utilities/ft_transform_sens.m M /trunk/external/fieldtrip/utilities/ft_transform_vol.m M /trunk/external/fieldtrip/utilities/markdown2matlab.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/fixpos.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m A /trunk/external/fieldtrip/utilities/private/ft_postamble_savefig.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_savevar.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_init.m M /trunk/external/fieldtrip/utilities/private/ft_preamble_loadvar.m M /trunk/external/fieldtrip/utilities/private/ft_test_run.m M /trunk/external/fieldtrip/utilities/private/getdatfield.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/loadvar.m M /trunk/external/fieldtrip/utilities/private/makessense.m M /trunk/external/fieldtrip/utilities/private/pos2dim.m M /trunk/external/fieldtrip/utilities/private/pos2transform.m A /trunk/external/fieldtrip/utilities/private/reproducescript.m M /trunk/external/fieldtrip/utilities/private/savevar.m A /trunk/external/fieldtrip/utilities/private/varsize.m update of external/fieldtrip to 0704552 ------------------------------------------------------------------------ r7538 | tim | 2019-03-07 16:46:26 +0000 (Thu, 07 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m ------------------------------------------------------------------------ r7539 | tim | 2019-03-07 16:46:38 +0000 (Thu, 07 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_mesh_pack_points.m ------------------------------------------------------------------------ r7540 | karl | 2019-03-11 10:44:51 +0000 (Mon, 11 Mar 2019) | 1 line Changed paths: M /trunk/spm_DEM_z.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_read.m Development work on voice recognition ------------------------------------------------------------------------ r7541 | spm | 2019-03-11 12:20:27 +0000 (Mon, 11 Mar 2019) | 2 lines Changed paths: M /trunk/spm_platform.m Enhancement: Add AArch64 in the list of platforms. ------------------------------------------------------------------------ r7542 | tim | 2019-03-11 15:25:52 +0000 (Mon, 11 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m ------------------------------------------------------------------------ r7543 | guillaume | 2019-03-15 12:56:04 +0000 (Fri, 15 Mar 2019) | 2 lines Changed paths: M /trunk/spm_mesh_project.m Bug fix: data can be an spm_vol structure. ------------------------------------------------------------------------ r7544 | vladimir | 2019-03-15 16:20:16 +0000 (Fri, 15 Mar 2019) | 1 line Changed paths: M /trunk/spm_eeg_inv_checkforward.m M /trunk/spm_eeg_inv_datareg.m M /trunk/spm_eeg_inv_datareg_ui.m M /trunk/spm_eeg_inv_get_vol_sens.m M /trunk/spm_eeg_inv_vbecd.m M /trunk/spm_eeg_inv_vbecd_gui.m M /trunk/spm_eeg_prep.m M /trunk/spm_eeg_wrap_dipfit_vbecd.m Updating to new function names in FT ------------------------------------------------------------------------ r7545 | karl | 2019-03-16 11:57:13 +0000 (Sat, 16 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_listen.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m voice recognition development ------------------------------------------------------------------------ r7546 | karl | 2019-03-18 11:02:22 +0000 (Mon, 18 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_read.m A /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m Voice recognition development ------------------------------------------------------------------------ r7547 | guillaume | 2019-03-18 17:19:38 +0000 (Mon, 18 Mar 2019) | 2 lines Changed paths: A /trunk/tests/test_spm_Ncdf.m Enhancement: add unit test for spm_Ncdf.m ------------------------------------------------------------------------ r7548 | guillaume | 2019-03-20 10:08:49 +0000 (Wed, 20 Mar 2019) | 2 lines Changed paths: M /trunk/spm_Ncdf.m M /trunk/spm_tests.m Enhancement: return gracefully in the absence of any test. ------------------------------------------------------------------------ r7549 | guillaume | 2019-03-20 12:45:59 +0000 (Wed, 20 Mar 2019) | 2 lines Changed paths: M /trunk/spm_save.m Enhancement: add convenient option to save plain text files. ------------------------------------------------------------------------ r7550 | spm | 2019-03-21 09:41:16 +0000 (Thu, 21 Mar 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/Contents.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/edf2fieldtrip.m M /trunk/external/fieldtrip/fieldtrip2besa.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_warp_apply.m M /trunk/external/fieldtrip/fileio/private/read_biosemi_bdf.m M /trunk/external/fieldtrip/fileio/private/read_biosig_header.m M /trunk/external/fieldtrip/fileio/private/read_ctf_meg4.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ds.m M /trunk/external/fieldtrip/fileio/private/read_nexstim_nxe.m M /trunk/external/fieldtrip/fileio/private/read_ns_hdr.m M /trunk/external/fieldtrip/fileio/private/refine.m M /trunk/external/fieldtrip/forward/ft_convert_units.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_warp_apply.m M /trunk/external/fieldtrip/ft_annotate.m M /trunk/external/fieldtrip/ft_anonymizedata.m M /trunk/external/fieldtrip/ft_appendsens.m M /trunk/external/fieldtrip/ft_appendsource.m M /trunk/external/fieldtrip/ft_appendtimelock.m M /trunk/external/fieldtrip/ft_artifact_nan.m M /trunk/external/fieldtrip/ft_clusterplot.m M /trunk/external/fieldtrip/ft_combineplanar.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_connectivitysimulation.m M /trunk/external/fieldtrip/ft_crossfrequencyanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defaults.m M /trunk/external/fieldtrip/ft_definetrial.m M /trunk/external/fieldtrip/ft_denoise_dssp.m M /trunk/external/fieldtrip/ft_denoise_pca.m M /trunk/external/fieldtrip/ft_denoise_prewhiten.m M /trunk/external/fieldtrip/ft_denoise_synthetic.m M /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_electrodermalactivity.m M /trunk/external/fieldtrip/ft_movieplotTFR.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_sourcemodel.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m M /trunk/external/fieldtrip/ft_sourceplot.m A /trunk/external/fieldtrip/ft_statistics_mvpa.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_topoplotCC.m M /trunk/external/fieldtrip/ft_topoplotER.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/ft_topoplotTFR.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/private/ft_convert_units.m M /trunk/external/fieldtrip/plotting/private/ft_warp_apply.m M /trunk/external/fieldtrip/plotting/private/refine.m D /trunk/external/fieldtrip/private/mutexlock.m A /trunk/external/fieldtrip/private/prepare_mesh_fittemplate.m M /trunk/external/fieldtrip/private/refine.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_general.m M /trunk/external/fieldtrip/utilities/ft_documentationindex.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_warp_apply.m M /trunk/external/fieldtrip/utilities/printstruct.m M /trunk/external/fieldtrip/utilities/private/ft_postamble_savefig.m A /trunk/external/fieldtrip/utilities/private/mutexlock.m M /trunk/external/fieldtrip/utilities/private/refine.m update of external/fieldtrip to 21a5c37 ------------------------------------------------------------------------ r7551 | karl | 2019-03-21 15:10:05 +0000 (Thu, 21 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m voice recognition development ------------------------------------------------------------------------ r7552 | karl | 2019-03-25 10:46:03 +0000 (Mon, 25 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_onset.m A /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m voice recognition development ------------------------------------------------------------------------ r7553 | john | 2019-03-25 12:13:46 +0000 (Mon, 25 Mar 2019) | 2 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_rice_mixture.m * Fixed problem (found by Christian Gaser) when dealing with images with very small intensities. ------------------------------------------------------------------------ r7554 | thomas | 2019-03-27 09:28:57 +0000 (Wed, 27 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_DEM.m Added a condition to prevent evaluation of evidence for discrete model if prior probability is less than exp(-3) ------------------------------------------------------------------------ r7555 | thomas | 2019-03-27 13:33:10 +0000 (Wed, 27 Mar 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/Flower images.png A /trunk/toolbox/DEM/MDP_Heart_Beat.m A /trunk/toolbox/DEM/Spider images.png Added heart-beat MDP demo ------------------------------------------------------------------------ r7556 | thomas | 2019-03-27 13:39:18 +0000 (Wed, 27 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Added interoceptive inference demo to DEM gui ------------------------------------------------------------------------ r7557 | karl | 2019-03-27 17:11:16 +0000 (Wed, 27 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_test.m ------------------------------------------------------------------------ r7558 | karl | 2019-03-28 12:39:16 +0000 (Thu, 28 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m voice recognition development ------------------------------------------------------------------------ r7559 | thomas | 2019-03-28 17:10:21 +0000 (Thu, 28 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Minor correction to empirical priors for policies and preferences. Added a line to ensure DEM scheme starts where it left off when using mixed models with hierarchical MDP ------------------------------------------------------------------------ r7560 | thomas | 2019-03-29 14:39:38 +0000 (Fri, 29 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_DEM.m minor correction ------------------------------------------------------------------------ r7561 | karl | 2019-03-30 10:39:07 +0000 (Sat, 30 Mar 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_CVA_RSA.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7562 | karl | 2019-04-01 10:49:28 +0100 (Mon, 01 Apr 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m A /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m VR recognition ------------------------------------------------------------------------ r7563 | guillaume | 2019-04-01 11:39:24 +0100 (Mon, 01 Apr 2019) | 2 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_dexpm.m M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/Longitudinal/spm_meanm.m M /trunk/toolbox/Longitudinal/spm_noise_estimate.m M /trunk/toolbox/Longitudinal/spm_pairwise.m M /trunk/toolbox/Longitudinal/spm_rice_mixture.m M /trunk/toolbox/Longitudinal/spm_series_align.m M /trunk/toolbox/Longitudinal/tbx_cfg_longitudinal.m Enhancement: add dependencies for Serial Longitudinal Registration. ------------------------------------------------------------------------ r7564 | guillaume | 2019-04-02 11:50:42 +0100 (Tue, 02 Apr 2019) | 2 lines Changed paths: M /trunk/spm_input.m Bug fix: graphics handle is an object and not a double. ------------------------------------------------------------------------ r7565 | guillaume | 2019-04-03 10:36:23 +0100 (Wed, 03 Apr 2019) | 2 lines Changed paths: M /trunk/spm_image.m M /trunk/spm_orthviews/spm_ov_reorient.m Enhancement: update interface for reorient plugin. ------------------------------------------------------------------------ r7566 | karl | 2019-04-03 13:15:50 +0100 (Wed, 03 Apr 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7567 | karl | 2019-04-04 11:41:15 +0100 (Thu, 04 Apr 2019) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m VR developments (and minor upgrade to spm_PEB making the option the precision of the hyper prior (and increasing it to 1 (from 1/16)) ------------------------------------------------------------------------ r7568 | guillaume | 2019-04-09 12:03:59 +0100 (Tue, 09 Apr 2019) | 4 lines Changed paths: M /trunk/@file_array/private/file2mat.c M /trunk/src/spm_mapping.c M /trunk/src/spm_vol_access.c Bug fix: unfortunate typo on MSVC macro _MSC_VER, see: https://docs.microsoft.com/en-us/cpp/preprocessor/predefined-macros https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=spm;b64d5f0a.1904 ------------------------------------------------------------------------ r7569 | guillaume | 2019-04-09 12:51:37 +0100 (Tue, 09 Apr 2019) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 M /trunk/@file_array/private/mat2file.mexw64 M /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexw64 M /trunk/spm_mesh_reduce.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw64 M /trunk/toolbox/FieldMap/pm_pad.mexw64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7570 | guillaume | 2019-04-09 16:48:34 +0100 (Tue, 09 Apr 2019) | 2 lines Changed paths: M /trunk/man/batch/batch.tex M /trunk/man/manual.pdf Doc: List module names explicitly in the batch tutorial. ------------------------------------------------------------------------ r7571 | guillaume | 2019-04-10 16:23:16 +0100 (Wed, 10 Apr 2019) | 3 lines Changed paths: M /trunk/Contents.m M /trunk/spm.m M /trunk/spm_Welcome.m M /trunk/spm_figure.m Enhancement: access command line arguments in non-compiled mode. Doc: WTCN -> WCHN ------------------------------------------------------------------------ r7572 | guillaume | 2019-04-12 17:16:32 +0100 (Fri, 12 Apr 2019) | 2 lines Changed paths: M /trunk/spm_load.m M /trunk/spm_save.m New feature: load/save NPY-formated files. ------------------------------------------------------------------------ r7573 | guillaume | 2019-04-15 09:49:56 +0100 (Mon, 15 Apr 2019) | 2 lines Changed paths: M /trunk/spm_image.m Enhancement: enable contextual menu in Image Display. ------------------------------------------------------------------------ r7574 | karl | 2019-04-19 21:38:15 +0100 (Fri, 19 Apr 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m A /trunk/toolbox/DEM/spm_voice_FS.m A /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7575 | karl | 2019-04-21 17:47:39 +0100 (Sun, 21 Apr 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m A /trunk/toolbox/DEM/VOX.mat A /trunk/toolbox/DEM/sentence.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_FS.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m D /trunk/toolbox/DEM/spm_voice_listen.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m M /trunk/toolbox/DEM/spm_voice_warp.m A /trunk/toolbox/DEM/triangle_square.mat Voice recognition development work (first phase completed), with VOX.mat structure added to DEM Toolbox ------------------------------------------------------------------------ r7576 | karl | 2019-04-23 10:22:44 +0100 (Tue, 23 Apr 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7577 | guillaume | 2019-04-24 09:59:56 +0100 (Wed, 24 Apr 2019) | 3 lines Changed paths: M /trunk/@gifti/subsref.m M /trunk/config/spm_run_bms_vis.m M /trunk/spm_bms_compare_groups.m M /trunk/spm_bms_display.m M /trunk/spm_data_read.m M /trunk/spm_dcm_sessions.m M /trunk/spm_est_non_sphericity.m M /trunk/spm_mesh_calc.m M /trunk/spm_mesh_render.m M /trunk/spm_render.m M /trunk/spm_spm.m Enhancement: Use full(X) instead of X() for better compatibility with file_array/numeric array. Also removed several unnecessary () for function calls. ------------------------------------------------------------------------ r7578 | guillaume | 2019-04-25 11:25:26 +0100 (Thu, 25 Apr 2019) | 2 lines Changed paths: M /trunk/spm_orthviews/spm_ov_mesh.m M /trunk/spm_orthviews/spm_ov_reorient.m Bug fix: handle gifti with external files in mesh plugin. ------------------------------------------------------------------------ r7579 | vladimir | 2019-05-01 12:32:17 +0100 (Wed, 01 May 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_headmodel.m M /trunk/spm_eeg_inv_get_vol_sens.m M /trunk/toolbox/MEEGtools/spm_eeg_fix_ctf_headloc.m minor fixes ------------------------------------------------------------------------ r7580 | karl | 2019-05-01 13:48:04 +0100 (Wed, 01 May 2019) | 1 line Changed paths: M /trunk/spm_dcm_HMM.m M /trunk/spm_dcm_HMM_plot.m M /trunk/spm_softmax.m Bug fix to spm_softmax (to properly handle row vectors)and refinements to hierarchical Markov modelling of DCM ------------------------------------------------------------------------ r7581 | karl | 2019-05-01 13:50:13 +0100 (Wed, 01 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_word.m A /trunk/toolbox/DEM/spm_voice_identity.m VR development ------------------------------------------------------------------------ r7582 | guillaume | 2019-05-01 16:37:16 +0100 (Wed, 01 May 2019) | 2 lines Changed paths: M /trunk/spm_Gcdf.m M /trunk/spm_Xcdf.m Enhancement: add option to return the upper tail probability of the Chi-squared and Gamma distributions. ------------------------------------------------------------------------ r7583 | karl | 2019-05-02 13:10:08 +0100 (Thu, 02 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m VR development ------------------------------------------------------------------------ r7584 | karl | 2019-05-02 13:10:56 +0100 (Thu, 02 May 2019) | 1 line Changed paths: M /trunk/spm_softmax.m ------------------------------------------------------------------------ r7585 | spm | 2019-05-03 09:19:28 +0100 (Fri, 03 May 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/besa2fieldtrip.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_csd2transfer.m M /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/fieldtrip2besa.m M /trunk/external/fieldtrip/fieldtrip2spss.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_write_cifti.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_event.m M /trunk/external/fieldtrip/fileio/ft_write_headshape.m M /trunk/external/fieldtrip/fileio/private/ReadHeader.m M /trunk/external/fieldtrip/fileio/private/avw_hdr_read.m M /trunk/external/fieldtrip/fileio/private/avw_img_read.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/decode_fif.m M /trunk/external/fieldtrip/fileio/private/decode_res4.m M /trunk/external/fieldtrip/fileio/private/fiff_open_le.m M /trunk/external/fieldtrip/fileio/private/find_outermost_boundary.m M /trunk/external/fieldtrip/fileio/private/fixdimord.m A /trunk/external/fieldtrip/fileio/private/fopen_or_error.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_convert_units.m M /trunk/external/fieldtrip/fileio/private/ft_datatype.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_source.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_timelock.m M /trunk/external/fieldtrip/fileio/private/ft_determine_units.m M /trunk/external/fieldtrip/fileio/private/ft_estimate_units.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_data.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/getdimord.m M /trunk/external/fieldtrip/fileio/private/getdimsiz.m M /trunk/external/fieldtrip/fileio/private/in_fopen_manscan.m M /trunk/external/fieldtrip/fileio/private/inifile.m M /trunk/external/fieldtrip/fileio/private/load_curry_data_file.m M /trunk/external/fieldtrip/fileio/private/mat2ades.m M /trunk/external/fieldtrip/fileio/private/np_read_splitted_fileinfo.m M /trunk/external/fieldtrip/fileio/private/np_readdata.m M /trunk/external/fieldtrip/fileio/private/np_readfileinfo.m M /trunk/external/fieldtrip/fileio/private/np_readmarker.m M /trunk/external/fieldtrip/fileio/private/openbdf.m M /trunk/external/fieldtrip/fileio/private/presentation_log.m M /trunk/external/fieldtrip/fileio/private/read_4d_hdr.m M /trunk/external/fieldtrip/fileio/private/read_ahdf5_hdr.m M /trunk/external/fieldtrip/fileio/private/read_asa.m M /trunk/external/fieldtrip/fileio/private/read_asa_bnd.m M /trunk/external/fieldtrip/fileio/private/read_asa_dip.m M /trunk/external/fieldtrip/fileio/private/read_asa_elc.m M /trunk/external/fieldtrip/fileio/private/read_asa_mri.m M /trunk/external/fieldtrip/fileio/private/read_asa_msr.m M /trunk/external/fieldtrip/fileio/private/read_asa_vol.m M /trunk/external/fieldtrip/fileio/private/read_besa_besa.m M /trunk/external/fieldtrip/fileio/private/read_besa_sfp.m M /trunk/external/fieldtrip/fileio/private/read_besa_swf.m M /trunk/external/fieldtrip/fileio/private/read_bham.m M /trunk/external/fieldtrip/fileio/private/read_biff.m M /trunk/external/fieldtrip/fileio/private/read_bioimage_mgrid.m M /trunk/external/fieldtrip/fileio/private/read_biosemi_bdf.m M /trunk/external/fieldtrip/fileio/private/read_brainstorm_data.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_eeg.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_pos.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vhdr.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vmrk.m M /trunk/external/fieldtrip/fileio/private/read_bti_ascii.m M /trunk/external/fieldtrip/fileio/private/read_bti_hs.m M /trunk/external/fieldtrip/fileio/private/read_bti_m4d.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirsdata.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirsevent.m M /trunk/external/fieldtrip/fileio/private/read_bucn_nirshdr.m M /trunk/external/fieldtrip/fileio/private/read_buffer_offline_data.m M /trunk/external/fieldtrip/fileio/private/read_buffer_offline_events.m M /trunk/external/fieldtrip/fileio/private/read_buffer_offline_header.m M /trunk/external/fieldtrip/fileio/private/read_bv_srf.m M /trunk/external/fieldtrip/fileio/private/read_caret_spec.m M /trunk/external/fieldtrip/fileio/private/read_ctf_ascii.m M /trunk/external/fieldtrip/fileio/private/read_ctf_cls.m M /trunk/external/fieldtrip/fileio/private/read_ctf_dat.m M /trunk/external/fieldtrip/fileio/private/read_ctf_hist.m M /trunk/external/fieldtrip/fileio/private/read_ctf_meg4.m M /trunk/external/fieldtrip/fileio/private/read_ctf_mri.m M /trunk/external/fieldtrip/fileio/private/read_ctf_mri4.m M /trunk/external/fieldtrip/fileio/private/read_ctf_pos.m M /trunk/external/fieldtrip/fileio/private/read_ctf_res4.m M /trunk/external/fieldtrip/fileio/private/read_ctf_sens.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shape.m M /trunk/external/fieldtrip/fileio/private/read_ctf_shm.m M /trunk/external/fieldtrip/fileio/private/read_ctf_svl.m M /trunk/external/fieldtrip/fileio/private/read_curry.m M /trunk/external/fieldtrip/fileio/private/read_deymed_dat.m M /trunk/external/fieldtrip/fileio/private/read_deymed_ini.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_egis_data.m M /trunk/external/fieldtrip/fileio/private/read_egis_header.m M /trunk/external/fieldtrip/fileio/private/read_elec.m M /trunk/external/fieldtrip/fileio/private/read_eyelink_asc.m M /trunk/external/fieldtrip/fileio/private/read_fcdc_trl.m M /trunk/external/fieldtrip/fileio/private/read_itab_mhd.m M /trunk/external/fieldtrip/fileio/private/read_mat.m M /trunk/external/fieldtrip/fileio/private/read_mclust_t.m M /trunk/external/fieldtrip/fileio/private/read_mff_bin.m M /trunk/external/fieldtrip/fileio/private/read_micromed_event.m M /trunk/external/fieldtrip/fileio/private/read_micromed_trc.m M /trunk/external/fieldtrip/fileio/private/read_mpi_dap.m M /trunk/external/fieldtrip/fileio/private/read_nervus_data.m M /trunk/external/fieldtrip/fileio/private/read_nervus_header.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_bin.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nev.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nse.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nst.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_nts.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ntt.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ttl.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_eve.m M /trunk/external/fieldtrip/fileio/private/read_neuromag_maxfilterlog.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_evolution.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_signals.m M /trunk/external/fieldtrip/fileio/private/read_neurosim_spikes.m M /trunk/external/fieldtrip/fileio/private/read_nex_data.m M /trunk/external/fieldtrip/fileio/private/read_nex_event.m M /trunk/external/fieldtrip/fileio/private/read_nex_header.m M /trunk/external/fieldtrip/fileio/private/read_nexstim_event.m M /trunk/external/fieldtrip/fileio/private/read_nexstim_nxe.m M /trunk/external/fieldtrip/fileio/private/read_nifti2_hdr.m M /trunk/external/fieldtrip/fileio/private/read_nihonkohden_m00.m M /trunk/external/fieldtrip/fileio/private/read_nimh_cortex.m M /trunk/external/fieldtrip/fileio/private/read_nmc_archive_k_data.m M 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/trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/getdimsiz.m M /trunk/external/fieldtrip/utilities/private/hcp_getopt.m D /trunk/external/fieldtrip/utilities/private/icosahedron.m D /trunk/external/fieldtrip/utilities/private/icosahedron42.m M /trunk/external/fieldtrip/utilities/private/ignorefields.m M /trunk/external/fieldtrip/utilities/private/lmoutr.m A /trunk/external/fieldtrip/utilities/private/make_or_fetch_inputfile.m M /trunk/external/fieldtrip/utilities/private/makessense.m A /trunk/external/fieldtrip/utilities/private/mesh_icosahedron.m A /trunk/external/fieldtrip/utilities/private/mesh_octahedron.m A /trunk/external/fieldtrip/utilities/private/mesh_sphere.m A /trunk/external/fieldtrip/utilities/private/mesh_tetrahedron.m A /trunk/external/fieldtrip/utilities/private/printstruct_as_table.m M /trunk/external/fieldtrip/utilities/private/ptriproj.m M /trunk/external/fieldtrip/utilities/private/reproducescript.m A /trunk/external/fieldtrip/utilities/private/save_large_cfg_fields.m M /trunk/external/fieldtrip/utilities/private/savevar.m D /trunk/external/fieldtrip/utilities/private/struct2table.m M /trunk/external/fieldtrip/utilities/private/unparcellate.m M /trunk/external/fieldtrip/utilities/removefields.m M /trunk/external/fieldtrip/utilities/tokenize.m update of external/fieldtrip to ebdfa2a ------------------------------------------------------------------------ r7586 | guillaume | 2019-05-03 15:57:34 +0100 (Fri, 03 May 2019) | 2 lines Changed paths: M /trunk/spm_eeg_prep.m Bug fix: Use 'trial_type' instead of 'stim_type' for BIDS events files. ------------------------------------------------------------------------ r7587 | karl | 2019-05-06 17:47:53 +0100 (Mon, 06 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_FS.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m A /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m A /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7588 | karl | 2019-05-06 22:26:32 +0100 (Mon, 06 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7589 | karl | 2019-05-09 13:57:23 +0100 (Thu, 09 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_FS.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7590 | guillaume | 2019-05-14 12:12:47 +0100 (Tue, 14 May 2019) | 2 lines Changed paths: M /trunk/external/Makefile.fieldtrip A /trunk/external/fieldtrip/plotting/private/solid_angle.mexa64 A /trunk/external/fieldtrip/plotting/private/solid_angle.mexmaci64 A /trunk/external/fieldtrip/plotting/private/solid_angle.mexw32 A /trunk/external/fieldtrip/plotting/private/solid_angle.mexw64 Fix for recent changes in FieldTrip's MEX files. ------------------------------------------------------------------------ r7591 | john | 2019-05-15 11:57:38 +0100 (Wed, 15 May 2019) | 3 lines Changed paths: M /trunk/config/spm_cfg_st.m Updated reference to Oliver's paper. ------------------------------------------------------------------------ r7592 | john | 2019-05-15 11:59:23 +0100 (Wed, 15 May 2019) | 2 lines Changed paths: M /trunk/man/batch/batch.tex M /trunk/man/biblio/methods_group.bib M /trunk/man/multimodal/fmri.tex Updated out of date documentation and added a reference to Oliver's event-related paper. ------------------------------------------------------------------------ r7593 | john | 2019-05-20 19:58:16 +0100 (Mon, 20 May 2019) | 28 lines Changed paths: M /trunk/spm_diffeo.m M /trunk/spm_preproc8.m M /trunk/src/shoot_boundary.h M /trunk/src/shoot_dartel.c M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_diffeo3d.h M /trunk/src/shoot_optim3d.c M /trunk/src/shoot_regularisers.c M /trunk/src/spm_diffeo.c M /trunk/toolbox/Shoot/spm_shoot_greens.m Extensive changes, ready to break things during the SPM course ;o) * Fixed a bug that affected the full-multigrid optimisation used by many of the nonlinear registration algorithms. The bug most strongly effected registration of 2D images, but is likely have made 3D registration a tiny bit worse (because of its effect of the lower resolution stages of the multigrid solver). This bug was in shoot_regularisers.c, so recompilation of mex files is needed. * Increased stability throughout shoot_regularisers.c by multiplying values on the diagonal of the differential operators by 1.000001. This ensures things are more likely to remain positive definite, and makes spm_shoot_greens more stable. * Re-done spm_shoot_greens so that things are a little bit more stable. Greens functions of differential operators are now computed using double precision. Only the centre (DC) element of the FFT is handled differently in situations where the differential operator may be singular. The changes to shoot_regularisers.c (multiplying the diagonal by 1.000001) should mean that the DC element of the fft of the differential operator is now the only one that might approach zero. * Changed the way that compositions of deformations (by spm_diffeo) are done so that unwrapping should no longer be needed. * The deformation unwrapping procedure (and sampn_vox) has been moved to shoot_dartel.c as this is the only place it is used. Also fixed the bug that caused seg faults when composing warps of different sizes (passed the wrog dimensions to unwrap). * Removed the mexFunction for the Lie bracket stuff as it is not used (although the code is retained for possible future reference. * Added a function for computing image gradients, which handles boundary conditions better. Gradients computed by bsplins were maybe not as suitable because the mirror boundary conditions it uses are not quite the same as those used by push and pull. * Included a slight change to how the wp parameters are regularised in spm_preproc8.m. ------------------------------------------------------------------------ r7594 | bernadette | 2019-05-21 10:56:41 +0100 (Tue, 21 May 2019) | 1 line Changed paths: M /trunk/spm_eeg_cfc.m F test correction ------------------------------------------------------------------------ r7595 | mikael | 2019-05-23 14:48:53 +0100 (Thu, 23 May 2019) | 2 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_noise_estimate.m M /trunk/toolbox/Longitudinal/spm_rice_mixture.m Added output argument (info) that can be used to plot model fit. ------------------------------------------------------------------------ r7596 | karl | 2019-05-23 19:42:23 +0100 (Thu, 23 May 2019) | 1 line Changed paths: M /trunk/spm_PEB.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m M /trunk/toolbox/DEM/spm_MDP_check.m Minor bug fixes for backwards compatibility with MDP schemes ------------------------------------------------------------------------ r7597 | karl | 2019-05-23 19:42:38 +0100 (Thu, 23 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m A /trunk/toolbox/DEM/spm_voice_Q.m A /trunk/toolbox/DEM/spm_voice_dct.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_i.m A /trunk/toolbox/DEM/spm_voice_iQ.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m Voice recognition development work ------------------------------------------------------------------------ r7598 | karl | 2019-05-25 14:09:47 +0100 (Sat, 25 May 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_Q.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_dct.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iQ.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7599 | mikael | 2019-05-30 14:50:41 +0100 (Thu, 30 May 2019) | 2 lines Changed paths: M /trunk/toolbox/Longitudinal/spm_noise_estimate.m Added optional argument to set number of Rician mixture components. ------------------------------------------------------------------------ r7600 | karl | 2019-06-01 10:30:30 +0100 (Sat, 01 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iQ.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7601 | karl | 2019-06-03 10:41:06 +0100 (Mon, 03 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m A /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7602 | guillaume | 2019-06-05 15:34:18 +0100 (Wed, 05 Jun 2019) | 2 lines Changed paths: M /trunk/src/shoot_regularisers.c M /trunk/src/spm_add.c M /trunk/src/spm_conv_vol.c M /trunk/src/spm_diffeo.c Enhancements: remove compilation warnings. ------------------------------------------------------------------------ r7603 | spm | 2019-06-05 15:44:44 +0100 (Wed, 05 Jun 2019) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexa64 M /trunk/@file_array/private/mat2file.mexa64 M /trunk/spm_cat.mexa64 M /trunk/spm_diffeo.mexa64 M /trunk/spm_gamrnd.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34-12. ------------------------------------------------------------------------ r7604 | spm | 2019-06-05 15:57:54 +0100 (Wed, 05 Jun 2019) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 M /trunk/@file_array/private/mat2file.mexw64 M /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/external/bemcp/bem_Cii_cog.mexw64 M /trunk/external/bemcp/bem_Cii_cst.mexw64 M /trunk/external/bemcp/bem_Cii_lin.mexw64 M /trunk/external/bemcp/bem_Cij_cog.mexw64 M /trunk/external/bemcp/bem_Cij_cst.mexw64 M /trunk/external/bemcp/bem_Cij_lin.mexw64 M /trunk/external/bemcp/bem_Gi_cog.mexw64 M /trunk/external/bemcp/bem_Gi_vert.mexw64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/external/stats/nanmean.mexw64 M /trunk/external/fieldtrip/external/stats/nanstd.mexw64 M /trunk/external/fieldtrip/external/stats/nansum.mexw64 M /trunk/external/fieldtrip/external/stats/nanvar.mexw64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw64 M /trunk/external/fieldtrip/forward/private/plgndr.mexw64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw64 M /trunk/external/fieldtrip/forward/private/routlm.mexw64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw64 M /trunk/external/fieldtrip/plotting/private/solid_angle.mexw64 M /trunk/external/fieldtrip/private/lmoutr.mexw64 M /trunk/external/fieldtrip/private/plgndr.mexw64 M /trunk/external/fieldtrip/private/ptriproj.mexw64 M /trunk/external/fieldtrip/private/routlm.mexw64 M /trunk/external/fieldtrip/private/solid_angle.mexw64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexw64 M /trunk/spm_mesh_reduce.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw64 M /trunk/toolbox/FieldMap/pm_pad.mexw64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7605 | spm | 2019-06-05 16:41:55 +0100 (Wed, 05 Jun 2019) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/init.mexw32 M /trunk/@file_array/private/mat2file.mexw32 M /trunk/@gifti/private/zstream.mexw32 M /trunk/@xmltree/private/xml_findstr.mexw32 M /trunk/external/bemcp/bem_Cii_cog.mexw32 M /trunk/external/bemcp/bem_Cii_cst.mexw32 M /trunk/external/bemcp/bem_Cii_lin.mexw32 M /trunk/external/bemcp/bem_Cij_cog.mexw32 M /trunk/external/bemcp/bem_Cij_cst.mexw32 M /trunk/external/bemcp/bem_Cij_lin.mexw32 M /trunk/external/bemcp/bem_Gi_cog.mexw32 M /trunk/external/bemcp/bem_Gi_vert.mexw32 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/external/stats/nanmean.mexw32 M /trunk/external/fieldtrip/external/stats/nanstd.mexw32 M /trunk/external/fieldtrip/external/stats/nansum.mexw32 M /trunk/external/fieldtrip/external/stats/nanvar.mexw32 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw32 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw32 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw32 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw32 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw32 M /trunk/external/fieldtrip/forward/private/plgndr.mexw32 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw32 M /trunk/external/fieldtrip/forward/private/routlm.mexw32 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw32 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw32 M /trunk/external/fieldtrip/plotting/private/solid_angle.mexw32 M /trunk/external/fieldtrip/private/lmoutr.mexw32 M /trunk/external/fieldtrip/private/plgndr.mexw32 M /trunk/external/fieldtrip/private/ptriproj.mexw32 M /trunk/external/fieldtrip/private/routlm.mexw32 M /trunk/external/fieldtrip/private/solid_angle.mexw32 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw32 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw32 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_jsonread.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_reduce.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw32 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw32 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw32 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw32 M /trunk/toolbox/FieldMap/pm_pad.mexw32 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7606 | guillaume | 2019-06-06 11:52:30 +0100 (Thu, 06 Jun 2019) | 2 lines Changed paths: M /trunk/spm.m M /trunk/spm_Menu.m Enhancement: More robust initialisation if 'external' or 'toolbox' is missing. ------------------------------------------------------------------------ r7607 | peter | 2019-06-06 13:52:38 +0100 (Thu, 06 Jun 2019) | 1 line Changed paths: M /trunk/spm_find_pC.m Update to spm_find_pC.m to include observation priors (e.g. leadfield) for a DCM for CSD, to fix an issue with spm_dcm_peb_fit ------------------------------------------------------------------------ r7608 | spm | 2019-06-06 15:05:59 +0100 (Thu, 06 Jun 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/ft_connectivity_corr.m D /trunk/external/fieldtrip/connectivity/ft_connectivity_laggedcoherence.m M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_event.m M /trunk/external/fieldtrip/fileio/ft_write_mri.m M /trunk/external/fieldtrip/fileio/ft_write_sens.m M /trunk/external/fieldtrip/fileio/private/elproj.m M /trunk/external/fieldtrip/fileio/private/fopen_or_error.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_fetch_header.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m A /trunk/external/fieldtrip/fileio/private/isdir_or_mkdir.m M /trunk/external/fieldtrip/fileio/private/load_curry_data_file.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vhdr.m M /trunk/external/fieldtrip/fileio/private/read_eeglabdata.m M /trunk/external/fieldtrip/fileio/private/read_eeglabevent.m M /trunk/external/fieldtrip/fileio/private/read_eeglabheader.m M /trunk/external/fieldtrip/fileio/private/undobalancing.m M /trunk/external/fieldtrip/fileio/private/write_edf.m M /trunk/external/fieldtrip/forward/private/elproj.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/undobalancing.m M /trunk/external/fieldtrip/ft_audiovideobrowser.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_defacevolume.m M /trunk/external/fieldtrip/ft_denoise_tsr.m M /trunk/external/fieldtrip/ft_freqbaseline.m M /trunk/external/fieldtrip/ft_heartrate.m M /trunk/external/fieldtrip/ft_layoutplot.m M /trunk/external/fieldtrip/ft_multiplotCC.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_qualitycheck.m M /trunk/external/fieldtrip/ft_sourcewrite.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/ft_topoplotIC.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/elproj.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m A /trunk/external/fieldtrip/plotting/private/mesh_cone.m A /trunk/external/fieldtrip/plotting/private/mesh_cube.m M /trunk/external/fieldtrip/plotting/private/undobalancing.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/private/bivariate_common.m A /trunk/external/fieldtrip/private/copy_brainvision_files.m A /trunk/external/fieldtrip/private/copy_ctf_files.m M /trunk/external/fieldtrip/private/elproj.m M /trunk/external/fieldtrip/private/fopen_or_error.m A /trunk/external/fieldtrip/private/isdir_or_mkdir.m A /trunk/external/fieldtrip/private/merge_table.m M /trunk/external/fieldtrip/private/mergeconfig.m M /trunk/external/fieldtrip/private/multivariate_decomp.m M /trunk/external/fieldtrip/private/pipeline-skeleton.html M /trunk/external/fieldtrip/private/topoplot_common.m M /trunk/external/fieldtrip/private/undobalancing.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_fetch_header.m M /trunk/external/fieldtrip/utilities/matlab2markdown.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/mergeconfig.m M /trunk/external/fieldtrip/utilities/private/undobalancing.m update of external/fieldtrip to 6db2d39 ------------------------------------------------------------------------ r7609 | spm | 2019-06-06 15:57:04 +0100 (Thu, 06 Jun 2019) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexmaci64 M /trunk/@file_array/private/mat2file.mexmaci64 M /trunk/spm_cat.mexmaci64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_gamrnd.mexmaci64 M /trunk/spm_voronoi.mexmaci64 Compilation with MATLAB R2017a, Clang 6.0 and OS X 10.9.5 ------------------------------------------------------------------------ r7610 | karl | 2019-06-09 17:38:16 +0100 (Sun, 09 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/MDP_Heart_Beat.m M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7611 | tim | 2019-06-10 12:53:54 +0100 (Mon, 10 Jun 2019) | 1 line Changed paths: A /trunk/toolbox/MEEGtools/spm_opm_psd.m update to scaling of PSD ------------------------------------------------------------------------ r7612 | tim | 2019-06-10 17:24:05 +0100 (Mon, 10 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m 2D coordinate check ------------------------------------------------------------------------ r7613 | tim | 2019-06-10 17:24:45 +0100 (Mon, 10 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_synth_gradiometer.m narrowband gradiometry ------------------------------------------------------------------------ r7614 | tim | 2019-06-10 18:07:55 +0100 (Mon, 10 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m fixed head coil bug ------------------------------------------------------------------------ r7615 | thomas | 2019-06-12 14:35:41 +0100 (Wed, 12 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Changed computation of free energy to remove additional accuracy terms introduced in factorised scheme. ------------------------------------------------------------------------ r7616 | karl | 2019-06-12 14:51:03 +0100 (Wed, 12 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7617 | karl | 2019-06-13 13:01:17 +0100 (Thu, 13 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7618 | guillaume | 2019-06-17 13:29:46 +0100 (Mon, 17 Jun 2019) | 2 lines Changed paths: M /trunk/spm_mesh_contour.m A /trunk/spm_mesh_isoline.m New feature: Compute isolines on a triangular mesh. ------------------------------------------------------------------------ r7619 | guillaume | 2019-06-19 15:13:18 +0100 (Wed, 19 Jun 2019) | 2 lines Changed paths: M /trunk/@meeg/save.m Enhancement: more robust save with encoding of unicode characters. Thanks to Nikita B. ------------------------------------------------------------------------ r7620 | guillaume | 2019-06-19 16:44:39 +0100 (Wed, 19 Jun 2019) | 2 lines Changed paths: M /trunk/@nifti/private/getdict.m Enhancement: Add extra NIfTI Intent Codes for CIFTI-2. ------------------------------------------------------------------------ r7621 | guillaume | 2019-06-20 17:58:59 +0100 (Thu, 20 Jun 2019) | 2 lines Changed paths: M /trunk/@gifti/gifti.m M /trunk/@gifti/private/read_gifti_file.m A /trunk/@nifti/cifti.m M /trunk/@xmltree/editor.m M /trunk/@xmltree/isfield.m New feature: work in progress on CIFTI-2 support. ------------------------------------------------------------------------ r7622 | karl | 2019-06-23 20:52:33 +0100 (Sun, 23 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m VR development ------------------------------------------------------------------------ r7623 | guillaume | 2019-06-26 10:34:46 +0100 (Wed, 26 Jun 2019) | 2 lines Changed paths: M /trunk/@nifti/cifti.m M /trunk/@xmltree/convert.m Enhancement: further work on CIFTI conversion to NIfTI/GIfTI. ------------------------------------------------------------------------ r7624 | karl | 2019-06-26 13:10:25 +0100 (Wed, 26 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_segmentation.m VR development ------------------------------------------------------------------------ r7625 | karl | 2019-06-27 10:44:02 +0100 (Thu, 27 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m VR development ------------------------------------------------------------------------ r7626 | guillaume | 2019-06-27 10:47:35 +0100 (Thu, 27 Jun 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/utilities/ft_version.m Re-applying change from r7212 for compatibility with old MATLAB versions. ------------------------------------------------------------------------ r7627 | gareth | 2019-06-27 12:47:34 +0100 (Thu, 27 Jun 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_dipfit.m fixed bugs (for more than 1 dipole) increased error checking ------------------------------------------------------------------------ r7628 | gareth | 2019-06-27 12:48:39 +0100 (Thu, 27 Jun 2019) | 1 line Changed paths: M /trunk/spm_eeg_inv_vbecd.m removed dale extrapolation over time ------------------------------------------------------------------------ r7629 | john | 2019-06-27 13:35:45 +0100 (Thu, 27 Jun 2019) | 13 lines Changed paths: M /trunk/config/spm_cfg_preproc8.m M /trunk/spm_preproc_run.m M /trunk/src/Makefile A /trunk/src/hist2.c A /trunk/src/hist2.h M /trunk/src/shoot_bsplines.c M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_diffeo3d.h M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c M /trunk/src/spm_diffeo.c M /trunk/src/spm_hist2.c * Separated hist2.c from spm_hist2.c (with changes to Makefile) to make it easier to build a dynamically linked library of functions. * Modified spm_cfg_preproc8.m and spm_preproc_run.m to make it easier for Chris to use different voxel sizes for imported tissue maps. * Removed redundant variable declarations from spm_diffeo.c, shot_regularisers.c, shoot_optimN, shoot_bsplines.c and spm_diffeo.c. Purely * Made pushpull more accessable for dynamic linking in shoot_diffeo3d.c and shoot_diffeo3d.h. ------------------------------------------------------------------------ r7630 | karl | 2019-06-28 09:52:59 +0100 (Fri, 28 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_read.m VR development ------------------------------------------------------------------------ r7631 | karl | 2019-06-28 13:25:34 +0100 (Fri, 28 Jun 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m VR development ------------------------------------------------------------------------ r7632 | guillaume | 2019-07-03 10:05:24 +0100 (Wed, 03 Jul 2019) | 2 lines Changed paths: M /trunk/@gifti/private/read_gifti_file.m Enhancement: display full error message if a GIfTI file cannot be read. ------------------------------------------------------------------------ r7633 | karl | 2019-07-10 12:55:28 +0100 (Wed, 10 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m A /trunk/toolbox/DEM/recording.png M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m VR development ------------------------------------------------------------------------ r7634 | karl | 2019-07-10 12:55:55 +0100 (Wed, 10 Jul 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/spm_MDP_factor_graph.m factor graph plotting routine added for MDP ------------------------------------------------------------------------ r7635 | thomas | 2019-07-11 09:27:32 +0100 (Thu, 11 Jul 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/MDP_DEM_Mixed_Models_Movement.m Added active inference demo for 3D arm movements (in continuous and discrete time) ------------------------------------------------------------------------ r7636 | thomas | 2019-07-11 09:28:11 +0100 (Thu, 11 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/MDP_DEM_Mixed_Models_Movement.m ------------------------------------------------------------------------ r7637 | thomas | 2019-07-11 10:04:22 +0100 (Thu, 11 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Added mixed models and movement active inference demo to DEM gui ------------------------------------------------------------------------ r7638 | karl | 2019-07-11 10:42:10 +0100 (Thu, 11 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m VR development ------------------------------------------------------------------------ r7639 | peter | 2019-07-16 15:48:11 +0100 (Tue, 16 Jul 2019) | 1 line Changed paths: M /trunk/spm_dcm_fmri_check.m Minor fixes to spm_dcm_fmri_check.m for CSD DCM ------------------------------------------------------------------------ r7640 | guillaume | 2019-07-16 17:03:57 +0100 (Tue, 16 Jul 2019) | 2 lines Changed paths: M /trunk/spm_figure.m Enhancement: handle normalized font units when resizing. ------------------------------------------------------------------------ r7641 | guillaume | 2019-07-19 13:08:08 +0100 (Fri, 19 Jul 2019) | 2 lines Changed paths: M /trunk/spm_Menu.fig Doc: mention VBM in the interface. ------------------------------------------------------------------------ r7642 | guillaume | 2019-07-19 16:04:40 +0100 (Fri, 19 Jul 2019) | 4 lines Changed paths: M /trunk/spm_BIDS.m Enhancements for BIDS support: * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=SPM;b432f47e.1901 * https://github.com/bids-standard/bids-matlab/pull/8 ------------------------------------------------------------------------ r7643 | vladimir | 2019-07-24 15:02:23 +0100 (Wed, 24 Jul 2019) | 1 line Changed paths: M /trunk/spm_eeg_montage.m This will hopefully improve compatibility with the field name changes in FT ------------------------------------------------------------------------ r7644 | karl | 2019-07-24 19:47:56 +0100 (Wed, 24 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_test.m VR development ------------------------------------------------------------------------ r7645 | tim | 2019-07-25 14:58:25 +0100 (Thu, 25 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_create.m ------------------------------------------------------------------------ r7646 | tim | 2019-07-25 14:58:46 +0100 (Thu, 25 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_synth_gradiometer.m ------------------------------------------------------------------------ r7647 | tim | 2019-07-25 14:58:53 +0100 (Thu, 25 Jul 2019) | 1 line Changed paths: M /trunk/toolbox/MEEGtools/spm_opm_psd.m ------------------------------------------------------------------------ r7648 | karl | 2019-07-29 12:58:51 +0100 (Mon, 29 Jul 2019) | 2 lines Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_read.m VR development ------------------------------------------------------------------------ r7649 | vladimir | 2019-08-01 15:06:38 +0100 (Thu, 01 Aug 2019) | 1 line Changed paths: D /trunk/toolbox/MEEGtools/spm_eeg_ft_multitaper_powermap.m Removing this old function to not confuse the users. ------------------------------------------------------------------------ r7650 | adeel | 2019-08-03 06:40:52 +0100 (Sat, 03 Aug 2019) | 1 line Changed paths: M /trunk/man/dcm_rs/Fig2.png M /trunk/man/dcm_rs/Fig3.png updating manual chapter 38 with new graphics to reflect changes in generative model of spectral DCM. ------------------------------------------------------------------------ r7651 | karl | 2019-08-03 13:35:15 +0100 (Sat, 03 Aug 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_factor_graph.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_likelihood.m VR development ------------------------------------------------------------------------ r7652 | john | 2019-08-07 12:30:35 +0100 (Wed, 07 Aug 2019) | 5 lines Changed paths: M /trunk/spm_check_registration.m M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c M /trunk/src/spm_diffeo.c M /trunk/src/spm_field.c A /trunk/toolbox/Longitudinal/spm_compute_avg_mat.m M /trunk/toolbox/Longitudinal/spm_groupwise_ls.m M /trunk/toolbox/SRender/spm_sextract.m * Separated the compute_avg_mat function out from spm_groupwise_ls.m, as it may be useful elsewhere. * Hopefully further increased stability of the matrix solvers in spm_field and spm_diffeo. * Changed spm_check_registration so that it better optimises the arrangement of images in the figure. ------------------------------------------------------------------------ r7653 | karl | 2019-08-09 10:56:25 +0100 (Fri, 09 Aug 2019) | 1 line Changed paths: M /trunk/spm_conv.m A /trunk/spm_conv_full.m A /trunk/toolbox/DEM/DEMOVOX.mat M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_speak.m VR development ------------------------------------------------------------------------ r7654 | karl | 2019-08-25 21:09:35 +0100 (Sun, 25 Aug 2019) | 3 lines Changed paths: M /trunk/spm_PEB.m M /trunk/spm_dcm_U.m M /trunk/spm_dcm_bmr_all.m M /trunk/spm_dcm_create.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_get_bf.m M /trunk/spm_mip.m M /trunk/spm_mvb_U.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/FEP_MB_demo.m Minor edits and prettification BMA.bma removed from spm_dcm_bmr_all Max number of iteration increased from 32 to 64 in spm_PEB ------------------------------------------------------------------------ r7655 | karl | 2019-08-25 21:10:20 +0100 (Sun, 25 Aug 2019) | 1 line Changed paths: A /trunk/spm_A_reduce.m A /trunk/spm_MB_col.m A /trunk/spm_Markov_blanket.m A /trunk/spm_dcm_J.m A /trunk/spm_mb_ui.m A /trunk/toolbox/DEM/DEMO_DCM_MB.m Markov blanket (for DCM) introduced. End of the first phase of development work. ------------------------------------------------------------------------ r7656 | karl | 2019-08-26 15:00:36 +0100 (Mon, 26 Aug 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_ERP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m correction to spm_MDP_VB_X - outcomes are not replaced when specified (important for behavioral fitting) ------------------------------------------------------------------------ r7657 | thomas | 2019-08-30 14:15:39 +0100 (Fri, 30 Aug 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m corrected computation of free energy (replaced log with spm_log to preclude taking log of zero, and removed subtraction of likelihood term from first and last time-step during message passing) ------------------------------------------------------------------------ r7658 | karl | 2019-09-02 09:28:45 +0100 (Mon, 02 Sep 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m minor changes to 20 questions demo ------------------------------------------------------------------------ r7659 | guillaume | 2019-09-02 12:11:45 +0100 (Mon, 02 Sep 2019) | 1 line Changed paths: M /trunk/man/manual.pdf New compilation of manual ------------------------------------------------------------------------ r7660 | gareth | 2019-09-03 13:52:52 +0100 (Tue, 03 Sep 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_inv_invertiter.m fixed error in way handles empty U matrix ------------------------------------------------------------------------ r7661 | guillaume | 2019-09-04 14:57:39 +0100 (Wed, 04 Sep 2019) | 2 lines Changed paths: M /trunk/toolbox/FieldMap/pm_unwrap.m Bug fix: include fix from r5659 for the rare cases where it has to be used. ------------------------------------------------------------------------ r7662 | john | 2019-09-06 10:47:44 +0100 (Fri, 06 Sep 2019) | 3 lines Changed paths: M /trunk/man/dartelguide/dartelguide.tex Added documentation in response to email from A Shima. ------------------------------------------------------------------------ r7663 | vladimir | 2019-09-19 12:29:11 +0100 (Thu, 19 Sep 2019) | 1 line Changed paths: A /trunk/toolbox/MEEGtools/spm_eeg_ft_megplanar.m Adding new MEEGtool ------------------------------------------------------------------------ r7664 | karl | 2019-09-19 18:57:23 +0100 (Thu, 19 Sep 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/spm_MDP_VB_X.m Simplification of multi agent spm_MDP_VB_X.m sampling of outcomes (to maximise accuracy) ------------------------------------------------------------------------ r7665 | john | 2019-09-23 12:27:40 +0100 (Mon, 23 Sep 2019) | 2 lines Changed paths: M /trunk/config/spm_cfg_coreg.m Added some documentation to say that Coreg can't perform miracles. ------------------------------------------------------------------------ r7666 | john | 2019-09-24 17:30:13 +0100 (Tue, 24 Sep 2019) | 2 lines Changed paths: M /trunk/spm_dicom_convert.m Hopefully fixed the bug found by JE Meißner. ------------------------------------------------------------------------ r7667 | guillaume | 2019-09-25 13:05:13 +0100 (Wed, 25 Sep 2019) | 2 lines Changed paths: M /trunk/spm_mesh_render.m Bug fix: display an alternative colormap if the Colormap object cannot be edited. ------------------------------------------------------------------------ r7668 | guillaume | 2019-09-27 11:44:45 +0100 (Fri, 27 Sep 2019) | 2 lines Changed paths: M /trunk/spm_save.m Bug fix: convert NaN to n/a when writing TSV files. ------------------------------------------------------------------------ r7669 | john | 2019-09-30 18:45:01 +0100 (Mon, 30 Sep 2019) | 2 lines Changed paths: M /trunk/spm_smohist.m Tweaks to tidy up the way that over/underflow is dealt with. ------------------------------------------------------------------------ r7670 | john | 2019-10-01 17:55:13 +0100 (Tue, 01 Oct 2019) | 5 lines Changed paths: M /trunk/spm_preproc_run.m Better handle situations when the origin of images is poorly specified. Affine registration also tries using the centre of the field of view as the origin to see whether this is more effective. ------------------------------------------------------------------------ r7671 | vladimir | 2019-10-02 13:34:50 +0100 (Wed, 02 Oct 2019) | 1 line Changed paths: M /trunk/spm_eeg_convert.m Bug fix (thanks to Roshini). ------------------------------------------------------------------------ r7672 | vladimir | 2019-10-04 16:32:39 +0100 (Fri, 04 Oct 2019) | 1 line Changed paths: A /trunk/spm_eeg_display_tf.m New tool to display TF from nifti ------------------------------------------------------------------------ r7673 | guillaume | 2019-10-07 10:07:14 +0100 (Mon, 07 Oct 2019) | 2 lines Changed paths: M /trunk/spm_Menu.fig M /trunk/spm_eeg_display_tf.m New feature: Display for TF images ------------------------------------------------------------------------ r7674 | spm | 2019-10-07 10:22:45 +0100 (Mon, 07 Oct 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/connectivity/private/ft_notification.m M /trunk/external/fieldtrip/connectivity/private/ft_warning.m M /trunk/external/fieldtrip/fieldtrip2fiff.m M /trunk/external/fieldtrip/fileio/ft_chantype.m M /trunk/external/fieldtrip/fileio/ft_chanunit.m M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_atlas.m M /trunk/external/fieldtrip/fileio/ft_read_cifti.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_read_mri.m M /trunk/external/fieldtrip/fileio/ft_read_sens.m M /trunk/external/fieldtrip/fileio/ft_write_data.m M /trunk/external/fieldtrip/fileio/ft_write_sens.m A /trunk/external/fieldtrip/fileio/private/bids_tsv.m M /trunk/external/fieldtrip/fileio/private/biopac_acq.m M /trunk/external/fieldtrip/fileio/private/dataset2files.m M /trunk/external/fieldtrip/fileio/private/ft_apply_montage.m M /trunk/external/fieldtrip/fileio/private/ft_checkdata.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m M /trunk/external/fieldtrip/fileio/private/ft_hastoolbox.m M /trunk/external/fieldtrip/fileio/private/ft_notification.m M /trunk/external/fieldtrip/fileio/private/ft_warning.m M /trunk/external/fieldtrip/fileio/private/getdimord.m A /trunk/external/fieldtrip/fileio/private/motion_c3d.m A /trunk/external/fieldtrip/fileio/private/opensignals_txt.m D /trunk/external/fieldtrip/fileio/private/presentation_log.m A /trunk/external/fieldtrip/fileio/private/qualisys_tsv.m M /trunk/external/fieldtrip/fileio/private/quaternion.m D /trunk/external/fieldtrip/fileio/private/read_brainvision_pos.m M /trunk/external/fieldtrip/fileio/private/read_brainvision_vhdr.m M /trunk/external/fieldtrip/fileio/private/read_combined_ds.m M /trunk/external/fieldtrip/fileio/private/read_ctf_hc.m M /trunk/external/fieldtrip/fileio/private/read_edf.m M /trunk/external/fieldtrip/fileio/private/read_plexon_plx.m A /trunk/external/fieldtrip/fileio/private/read_polhemus_pos.m A /trunk/external/fieldtrip/fileio/private/read_presentation_log.m M /trunk/external/fieldtrip/fileio/private/read_ricoh_event.m M /trunk/external/fieldtrip/fileio/private/read_smi_txt.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_data.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_data_new.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_event.m A /trunk/external/fieldtrip/fileio/private/sccn_xdf.m M /trunk/external/fieldtrip/fileio/private/tokenize.m M /trunk/external/fieldtrip/fileio/private/write_edf.m M /trunk/external/fieldtrip/forward/ft_apply_montage.m M /trunk/external/fieldtrip/forward/ft_compute_leadfield.m M /trunk/external/fieldtrip/forward/private/ft_datatype_headmodel.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/ft_hastoolbox.m M /trunk/external/fieldtrip/forward/private/ft_notification.m M /trunk/external/fieldtrip/forward/private/ft_warning.m M /trunk/external/fieldtrip/forward/private/getdimord.m M /trunk/external/fieldtrip/forward/private/projecttri.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_denoise_prewhiten.m M /trunk/external/fieldtrip/ft_dipolefitting.m M /trunk/external/fieldtrip/ft_dipolesimulation.m M /trunk/external/fieldtrip/ft_freqanalysis.m M /trunk/external/fieldtrip/ft_freqstatistics.m M /trunk/external/fieldtrip/ft_megplanar.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_prepare_headmodel.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_leadfield.m M /trunk/external/fieldtrip/ft_prepare_mesh.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_preprocessing.m M /trunk/external/fieldtrip/ft_redefinetrial.m M /trunk/external/fieldtrip/ft_resampledata.m M /trunk/external/fieldtrip/ft_singleplotER.m A /trunk/external/fieldtrip/ft_singletrialanalysis.m M /trunk/external/fieldtrip/ft_sourceanalysis.m M /trunk/external/fieldtrip/ft_sourceinterpolate.m M /trunk/external/fieldtrip/ft_sourceparcellate.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_statistics_montecarlo.m M /trunk/external/fieldtrip/ft_timelockstatistics.m M /trunk/external/fieldtrip/ft_volumedownsample.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/ft_volumerealign.m M /trunk/external/fieldtrip/ft_volumesegment.m M /trunk/external/fieldtrip/inverse/beamformer_sam.m M /trunk/external/fieldtrip/inverse/dipole_fit.m A /trunk/external/fieldtrip/inverse/private/fixpos.m M /trunk/external/fieldtrip/inverse/private/ft_hastoolbox.m M /trunk/external/fieldtrip/inverse/private/ft_notification.m M /trunk/external/fieldtrip/inverse/private/ft_warning.m A /trunk/external/fieldtrip/inverse/private/headsurface.m M /trunk/external/fieldtrip/inverse/private/quaternion.m M /trunk/external/fieldtrip/plotting/ft_plot_cloud.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_slice.m M /trunk/external/fieldtrip/plotting/private/ft_apply_montage.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/ft_hastoolbox.m M /trunk/external/fieldtrip/plotting/private/ft_notification.m M /trunk/external/fieldtrip/plotting/private/ft_warning.m M /trunk/external/fieldtrip/plotting/private/intersect_plane.m M /trunk/external/fieldtrip/plotting/private/projecttri.m M /trunk/external/fieldtrip/plotting/private/quaternion.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_bandstopfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_highpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_lowpassfilter.m M /trunk/external/fieldtrip/preproc/ft_preproc_smooth.m M /trunk/external/fieldtrip/preproc/private/ft_notification.m M /trunk/external/fieldtrip/preproc/private/ft_warning.m A /trunk/external/fieldtrip/private/align_presentation.m A /trunk/external/fieldtrip/private/appendevent.m M /trunk/external/fieldtrip/private/copy_brainvision_files.m M /trunk/external/fieldtrip/private/copy_ctf_files.m M /trunk/external/fieldtrip/private/dataset2files.m M /trunk/external/fieldtrip/private/denoise_artifact.m A /trunk/external/fieldtrip/private/ft_singletrialanalysis_aseo.m M /trunk/external/fieldtrip/private/getdimord.m M /trunk/external/fieldtrip/private/isalmostequal.m M /trunk/external/fieldtrip/private/merge_table.m M /trunk/external/fieldtrip/private/prepare_mesh_headshape.m M /trunk/external/fieldtrip/private/projecttri.m M /trunk/external/fieldtrip/private/quaternion.m M /trunk/external/fieldtrip/private/read_ctf_hc.m M /trunk/external/fieldtrip/private/rejectvisual_summary.m M /trunk/external/fieldtrip/private/remove_double_vertices.m M /trunk/external/fieldtrip/private/savevar.m M /trunk/external/fieldtrip/private/volumethreshold.m M /trunk/external/fieldtrip/private/warp_dykstra2012.m M /trunk/external/fieldtrip/specest/ft_specest_irasa.m M /trunk/external/fieldtrip/specest/private/ft_notification.m M /trunk/external/fieldtrip/specest/private/ft_preproc_bandpassfilter.m M /trunk/external/fieldtrip/specest/private/ft_warning.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_brainvision_segmented.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_edf.m M /trunk/external/fieldtrip/trialfun/ft_trialfun_example2.m M /trunk/external/fieldtrip/utilities/dccnpath.m M /trunk/external/fieldtrip/utilities/ft_checkconfig.m M /trunk/external/fieldtrip/utilities/ft_checkdata.m M /trunk/external/fieldtrip/utilities/ft_datatype_headmodel.m M /trunk/external/fieldtrip/utilities/ft_datatype_parcellation.m M /trunk/external/fieldtrip/utilities/ft_datatype_segmentation.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_debug.m M /trunk/external/fieldtrip/utilities/ft_determine_coordsys.m M /trunk/external/fieldtrip/utilities/ft_documentationreference.m M /trunk/external/fieldtrip/utilities/ft_hash.m M /trunk/external/fieldtrip/utilities/ft_hastoolbox.m M /trunk/external/fieldtrip/utilities/ft_notice.m M /trunk/external/fieldtrip/utilities/ft_selectdata.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/ft_warning.m M /trunk/external/fieldtrip/utilities/markdown2matlab.m M /trunk/external/fieldtrip/utilities/matlab2markdown.m M /trunk/external/fieldtrip/utilities/private/dataset2files.m M /trunk/external/fieldtrip/utilities/private/fixsegmentation.m M /trunk/external/fieldtrip/utilities/private/ft_notification.m M /trunk/external/fieldtrip/utilities/private/getdimord.m M /trunk/external/fieldtrip/utilities/private/quaternion.m M /trunk/external/fieldtrip/utilities/private/savevar.m M /trunk/external/fieldtrip/utilities/private/volumethreshold.m M /trunk/external/fieldtrip/utilities/removefields.m M /trunk/external/fieldtrip/utilities/tokenize.m A /trunk/external/fieldtrip/xdf2fieldtrip.m update of external/fieldtrip to 2239ff8 ------------------------------------------------------------------------ r7675 | guillaume | 2019-10-09 11:37:43 +0100 (Wed, 09 Oct 2019) | 2 lines Changed paths: M /trunk/spm_meanby.m Enhancement: display array dimensions in error message in case of mismatch. ------------------------------------------------------------------------ r7676 | guillaume | 2019-10-22 11:19:29 +0100 (Tue, 22 Oct 2019) | 2 lines Changed paths: M /trunk/@gifti/gifti.m A /trunk/@gifti/private/off_read.m M /trunk/@gifti/private/ply_read.m M /trunk/@gifti/saveas.m Enhancement: Load OFF and save PLY mesh formats ------------------------------------------------------------------------ r7677 | guillaume | 2019-10-24 10:55:24 +0100 (Thu, 24 Oct 2019) | 2 lines Changed paths: A /trunk/spm_mesh_isosurface.m New feature: (currently) simple wrapper around isosurface ------------------------------------------------------------------------ r7678 | guillaume | 2019-10-24 15:08:03 +0100 (Thu, 24 Oct 2019) | 2 lines Changed paths: M /trunk/spm_orthviews/spm_ov_mesh.m Enhancement: display meshes filename. Thanks to Christian G. ------------------------------------------------------------------------ r7679 | spm | 2019-10-24 16:54:07 +0100 (Thu, 24 Oct 2019) | 3 lines Changed paths: M /trunk/spm_ADEM.m M /trunk/spm_BMS.m M /trunk/spm_dcm_HMM.m M /trunk/spm_dcm_J.m M /trunk/spm_dcm_bma.m M /trunk/spm_dcm_diagnose.m M /trunk/spm_dcm_fmri_mar.m M /trunk/spm_dcm_mdp.m M /trunk/spm_dcm_peb_bmc.m M /trunk/spm_mb_ui.m M /trunk/spm_mvb.m M /trunk/spm_mvb_G.m M /trunk/spm_nlsi_AI.m M /trunk/spm_nlsi_N.m M /trunk/toolbox/DEM/ADEM_cost_SHC.m M /trunk/toolbox/DEM/ADEM_cued_response.m M /trunk/toolbox/DEM/ADEM_eyeblink.m M /trunk/toolbox/DEM/ADEM_observe.m M /trunk/toolbox/DEM/ADEM_occlusion.m M /trunk/toolbox/DEM/ADEM_occulomotor_delays.m M /trunk/toolbox/DEM/ADEM_response_set.m M /trunk/toolbox/DEM/DEMO_CVA_RSA.m M /trunk/toolbox/DEM/DEMO_DCM_MB.m M /trunk/toolbox/DEM/DEMO_Lindley_paradox.m M /trunk/toolbox/DEM/DEMO_MDP_maze.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEMO_MDP_voice.m M /trunk/toolbox/DEM/DEMO_niche_construction.m M /trunk/toolbox/DEM/DEM_FEP_Lorenz.m M /trunk/toolbox/DEM/DEM_MDP_decision.m M /trunk/toolbox/DEM/DEM_cells_cells.m M /trunk/toolbox/DEM/DEM_coupled_oscillators.m M /trunk/toolbox/DEM/DEM_demo_ALAP.m M /trunk/toolbox/DEM/DEM_demo_MDP_DEM.m M /trunk/toolbox/DEM/DEM_demo_MDP_X.m M /trunk/toolbox/DEM/DEM_demo_MDP_fit.m M /trunk/toolbox/DEM/DEM_demo_MDP_habits.m M /trunk/toolbox/DEM/DEM_demo_MDP_reading.m M /trunk/toolbox/DEM/DEM_demo_MDP_rule.m M /trunk/toolbox/DEM/DEM_demo_MDP_search.m M /trunk/toolbox/DEM/DEM_demo_connectivity_fMRI.m M /trunk/toolbox/DEM/DEM_demo_contact_lens.m M /trunk/toolbox/DEM/DEM_demo_dendrite.m M /trunk/toolbox/DEM/DEM_demo_duet.m M /trunk/toolbox/DEM/DEM_demo_fMRI_HMM.m M /trunk/toolbox/DEM/DEM_demo_fMRI_PEB.m M /trunk/toolbox/DEM/DEM_demo_induced_fMRI.m M /trunk/toolbox/DEM/DEM_demo_song_inference.m M /trunk/toolbox/DEM/DEM_demo_song_omission.m M /trunk/toolbox/DEM/DEM_demo_texture.m M /trunk/toolbox/DEM/DEM_evidence_accumulation.m M /trunk/toolbox/DEM/DEM_morphogenesis.m M /trunk/toolbox/DEM/DEM_path_integrals.m M /trunk/toolbox/DEM/DEM_self_entropy.m M /trunk/toolbox/DEM/FEP_MB_demo.m M /trunk/toolbox/DEM/FEP_physics.m M /trunk/toolbox/DEM/FEP_self_entropy.m M /trunk/toolbox/DEM/MDP_DEM_Mixed_Models_Movement.m M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_Pharma_demo.m M /trunk/toolbox/DEM/MDP_DEM_Oculomotion_demo.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_sleep.m M /trunk/toolbox/DEM/spm_MDP_game_KL.m M /trunk/toolbox/DEM/spm_MDP_game_optimism.m M /trunk/toolbox/DEM/spm_MDP_mountain_car.m M /trunk/toolbox/DEM/spm_MDP_offer.m M /trunk/toolbox/DEM/spm_Manifold_solve.m M /trunk/toolbox/DEM/spm_fx_mountaincar.m M /trunk/toolbox/DEM/spm_fx_mountaincar_Q.m M /trunk/toolbox/DEM/spm_mountaincar_fun.m M /trunk/toolbox/DEM/spm_mountaincar_movie.m M /trunk/toolbox/DEM/spm_multinomial_log_evidence.m M /trunk/toolbox/DEM/spm_soup.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/Neural_Models/DEMO_model_reduction_ERP.m M /trunk/toolbox/Neural_Models/spm_dcm_Granger_asymmetry_demo.m M /trunk/toolbox/Neural_Models/spm_dcm_prior_responses.m M /trunk/toolbox/Neural_Models/spm_erp2csd_demo.m M /trunk/toolbox/Neural_Models/spm_induced_demo.m M /trunk/toolbox/Neural_Models/spm_mfm_demo.m M /trunk/toolbox/Neural_Models/spm_mtf_demo.m M /trunk/toolbox/Neural_Models/spm_nested_oscillations_demo.m M /trunk/toolbox/Neural_Models/spm_seizure_demo.m M /trunk/toolbox/Neural_Models/spm_sigmoid_demo.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m M /trunk/toolbox/dcm_meeg/spm_dcm_csd_results.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp.m M /trunk/toolbox/dcm_meeg/spm_dcm_search_eeg.m M /trunk/toolbox/dcm_meeg/spm_dcm_x_neural.m M /trunk/toolbox/dcm_meeg/spm_epileptor_demo.m M /trunk/toolbox/dcm_meeg/spm_erp_u.m M /trunk/toolbox/dcm_meeg/spm_fx_cmc_tfm.m M /trunk/toolbox/dcm_meeg/spm_fx_tfm.m M /trunk/toolbox/dcm_meeg/spm_fx_tfm_P.m M /trunk/toolbox/mci/demo-models/mci_demo_discount.m M /trunk/toolbox/mci/inference/spm_mci_mvntest.m M /trunk/toolbox/mci/inference/spm_mci_update_cov.m Doc: Fix text encoding to ASCII or UTF-8. iconv -f ISO-8859-1 -t UTF-8//TRANSLIT FILENAME -o FILENAME ------------------------------------------------------------------------ r7680 | spm | 2019-10-24 17:02:33 +0100 (Thu, 24 Oct 2019) | 2 lines Changed paths: D /trunk/toolbox/DEM/Flower images.png M /trunk/toolbox/DEM/MDP_Heart_Beat.m D /trunk/toolbox/DEM/Spider images.png A /trunk/toolbox/DEM/flower.png (from /trunk/toolbox/DEM/Flower images.png:7679) A /trunk/toolbox/DEM/spider.png (from /trunk/toolbox/DEM/Spider images.png:7679) Doc: rename image files without spaces ------------------------------------------------------------------------ r7681 | spm | 2019-10-24 17:22:40 +0100 (Thu, 24 Oct 2019) | 2 lines Changed paths: M /trunk/toolbox/DEM/FEP_physics.m Doc: file got truncated in r7679 ------------------------------------------------------------------------ r7682 | john | 2019-10-30 11:56:47 +0000 (Wed, 30 Oct 2019) | 2 lines Changed paths: M /trunk/src/Makefile A /trunk/src/shoot_openmp.c A /trunk/src/shoot_openmp.h M /trunk/src/shoot_optimN.c M /trunk/src/spm_field.c * Added Yael's first OpenMP changes. ------------------------------------------------------------------------ r7683 | john | 2019-10-30 12:27:46 +0000 (Wed, 30 Oct 2019) | 4 lines Changed paths: D /trunk/src/bsplinc.c D /trunk/src/bsplins.c M /trunk/src/shoot_openmp.c M /trunk/src/shoot_openmp.h * Removed bsplinc.c and bsplins.c because they are not actually used (older versions from before the actual numerics were separated off into bsplines.c). * Forgot to change some properties on Yael's openmp code. ------------------------------------------------------------------------ r7684 | john | 2019-10-30 14:21:34 +0000 (Wed, 30 Oct 2019) | 2 lines Changed paths: M /trunk/src/Makefile M /trunk/src/bsplines.c M /trunk/src/hist2.c M /trunk/src/shoot_boundary.c M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_multiscale.c M /trunk/src/shoot_openmp.c M /trunk/src/shoot_optim3d.c M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c A /trunk/src/spm_mex.h * Changes to enable libSPM.so to be compiled for calling via Julia. ------------------------------------------------------------------------ r7685 | john | 2019-11-01 12:56:19 +0000 (Fri, 01 Nov 2019) | 3 lines Changed paths: M /trunk/src/Makefile M /trunk/src/Makefile.var M /trunk/src/shoot_bsplines.c M /trunk/src/shoot_diffeo3d.c M /trunk/src/shoot_openmp.c M /trunk/src/shoot_optimN.c M /trunk/src/shoot_regularisers.c M /trunk/src/spm_diffeo.c M /trunk/src/spm_field.c * Incorporated Yael's OpenMP work. ------------------------------------------------------------------------ r7686 | guillaume | 2019-11-06 13:18:06 +0000 (Wed, 06 Nov 2019) | 2 lines Changed paths: M /trunk/src/Makefile M /trunk/src/bsplines.c M /trunk/src/bsplines.h M /trunk/src/hist2.h D /trunk/src/shoot_openmp.c D /trunk/src/shoot_openmp.h M /trunk/src/spm_diffeo.c M /trunk/src/spm_field.c M /trunk/src/spm_mex.h A /trunk/src/spm_openmp.c (from /trunk/src/shoot_openmp.c:7685) A /trunk/src/spm_openmp.h (from /trunk/src/shoot_openmp.h:7685) Refactoring: rename shoot_openmp as spm_openmp ------------------------------------------------------------------------ r7687 | guillaume | 2019-11-07 11:26:02 +0000 (Thu, 07 Nov 2019) | 2 lines Changed paths: M /trunk/src/Makefile M /trunk/src/Makefile.var M /trunk/src/spm_diffeo.c M /trunk/src/spm_field.c M /trunk/src/spm_mex.h M /trunk/src/spm_openmp.c M /trunk/src/spm_openmp.h Enhancement: use SPM_NUM_THREADS environment variable for OpenMP. ------------------------------------------------------------------------ r7688 | guillaume | 2019-11-07 12:24:42 +0000 (Thu, 07 Nov 2019) | 2 lines Changed paths: M /trunk/src/spm_openmp.c M /trunk/src/spm_openmp.h Enhancement: fix for compilation on Windows with gcc. ------------------------------------------------------------------------ r7689 | guillaume | 2019-11-07 13:25:47 +0000 (Thu, 07 Nov 2019) | 1 line Changed paths: M /trunk/src/spm_openmp.c Enhancement: better support of Windows. ------------------------------------------------------------------------ r7690 | guillaume | 2019-11-07 17:02:55 +0000 (Thu, 07 Nov 2019) | 2 lines Changed paths: A /trunk/tests/test_spm_openmp.m Test: add tests for OpenMP compilation from Yael B. Currently disabled. ------------------------------------------------------------------------ r7691 | guillaume | 2019-11-08 17:08:21 +0000 (Fri, 08 Nov 2019) | 2 lines Changed paths: M /trunk/spm_browser.m Enhancement: remove warning about use of javacomponent. ------------------------------------------------------------------------ r7692 | guillaume | 2019-11-13 16:03:17 +0000 (Wed, 13 Nov 2019) | 2 lines Changed paths: M /trunk/spm_eeg_inv_visu3D_api.fig Bug fix: FontWeight property value 'demi' is deprecated. ------------------------------------------------------------------------ r7693 | spm | 2019-11-15 17:03:50 +0000 (Fri, 15 Nov 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/fileio/ft_filetype.m M /trunk/external/fieldtrip/fileio/ft_read_data.m M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_header.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/external/fieldtrip/fileio/ft_write_event.m D /trunk/external/fieldtrip/fileio/private/appendevent.m A /trunk/external/fieldtrip/fileio/private/appendstruct.m M /trunk/external/fieldtrip/fileio/private/bids_tsv.m M /trunk/external/fieldtrip/fileio/private/channelposition.m M /trunk/external/fieldtrip/fileio/private/ft_datatype_sens.m A /trunk/external/fieldtrip/fileio/private/maus_textgrid.m M /trunk/external/fieldtrip/fileio/private/read_neuralynx_ncs.m M /trunk/external/fieldtrip/fileio/private/read_ricoh_event.m A /trunk/external/fieldtrip/fileio/private/read_tck.m A /trunk/external/fieldtrip/fileio/private/read_trk.m A /trunk/external/fieldtrip/fileio/private/read_vtk_xml.m M /trunk/external/fieldtrip/fileio/private/read_yokogawa_event.m M /trunk/external/fieldtrip/forward/private/channelposition.m M /trunk/external/fieldtrip/forward/private/ft_datatype_sens.m M /trunk/external/fieldtrip/forward/private/projecttri.m M /trunk/external/fieldtrip/ft_connectivityanalysis.m M /trunk/external/fieldtrip/ft_connectivityplot.m M /trunk/external/fieldtrip/ft_databrowser.m M /trunk/external/fieldtrip/ft_electrodeplacement.m A /trunk/external/fieldtrip/ft_eventtiminganalysis.m M /trunk/external/fieldtrip/ft_interactiverealign.m M /trunk/external/fieldtrip/ft_megrealign.m M /trunk/external/fieldtrip/ft_multiplotER.m M /trunk/external/fieldtrip/ft_multiplotTFR.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_rejectvisual.m M /trunk/external/fieldtrip/ft_singleplotER.m M /trunk/external/fieldtrip/ft_singleplotTFR.m D /trunk/external/fieldtrip/ft_singletrialanalysis.m M /trunk/external/fieldtrip/ft_sourceplot.m M /trunk/external/fieldtrip/ft_volumenormalise.m M /trunk/external/fieldtrip/plotting/ft_plot_cloud.m M /trunk/external/fieldtrip/plotting/ft_plot_headshape.m M /trunk/external/fieldtrip/plotting/ft_plot_mesh.m M /trunk/external/fieldtrip/plotting/ft_plot_sens.m M /trunk/external/fieldtrip/plotting/ft_plot_vector.m M /trunk/external/fieldtrip/plotting/private/channelposition.m M /trunk/external/fieldtrip/plotting/private/ft_datatype_sens.m M /trunk/external/fieldtrip/plotting/private/projecttri.m D /trunk/external/fieldtrip/private/appendevent.m M /trunk/external/fieldtrip/private/browse_simpleFFT.m M /trunk/external/fieldtrip/private/channelposition.m M /trunk/external/fieldtrip/private/chanscale_common.m A /trunk/external/fieldtrip/private/char2rgb.m A /trunk/external/fieldtrip/private/linecolor_common.m M /trunk/external/fieldtrip/private/multivariate_decomp.m M /trunk/external/fieldtrip/private/projecttri.m M /trunk/external/fieldtrip/src/nanmean.c M /trunk/external/fieldtrip/src/nanstd.c M /trunk/external/fieldtrip/src/nansum.c M /trunk/external/fieldtrip/src/nanvar.c M /trunk/external/fieldtrip/utilities/appendstruct.m M /trunk/external/fieldtrip/utilities/ft_channelselection.m M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/external/fieldtrip/utilities/private/channelposition.m update of external/fieldtrip to 515c158 ------------------------------------------------------------------------ r7694 | spm | 2019-11-15 17:09:44 +0000 (Fri, 15 Nov 2019) | 2 lines Changed paths: M /trunk/@file_array/private/file2mat.mexw64 M /trunk/@file_array/private/init.mexw64 M /trunk/@file_array/private/mat2file.mexw64 M /trunk/@gifti/private/zstream.mexw64 M /trunk/@xmltree/private/xml_findstr.mexw64 M /trunk/external/bemcp/bem_Cii_cog.mexw64 M /trunk/external/bemcp/bem_Cii_cst.mexw64 M /trunk/external/bemcp/bem_Cii_lin.mexw64 M /trunk/external/bemcp/bem_Cij_cog.mexw64 M /trunk/external/bemcp/bem_Cij_cst.mexw64 M /trunk/external/bemcp/bem_Cij_lin.mexw64 M /trunk/external/bemcp/bem_Gi_cog.mexw64 M /trunk/external/bemcp/bem_Gi_vert.mexw64 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/external/stats/nanmean.mexw64 M /trunk/external/fieldtrip/external/stats/nanstd.mexw64 M /trunk/external/fieldtrip/external/stats/nansum.mexw64 M /trunk/external/fieldtrip/external/stats/nanvar.mexw64 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw64 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw64 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw64 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw64 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw64 M /trunk/external/fieldtrip/forward/private/plgndr.mexw64 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw64 M /trunk/external/fieldtrip/forward/private/routlm.mexw64 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw64 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw64 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw64 M /trunk/external/fieldtrip/plotting/private/solid_angle.mexw64 M /trunk/external/fieldtrip/private/lmoutr.mexw64 M /trunk/external/fieldtrip/private/plgndr.mexw64 M /trunk/external/fieldtrip/private/ptriproj.mexw64 M /trunk/external/fieldtrip/private/routlm.mexw64 M /trunk/external/fieldtrip/private/solid_angle.mexw64 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw64 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw64 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw64 M /trunk/spm_add.mexw64 M /trunk/spm_bsplinc.mexw64 M /trunk/spm_bsplins.mexw64 M /trunk/spm_bwlabel.mexw64 M /trunk/spm_cat.mexw64 M /trunk/spm_conv_vol.mexw64 M /trunk/spm_diffeo.mexw64 M /trunk/spm_dilate_erode.mexw64 M /trunk/spm_existfile.mexw64 M /trunk/spm_field.mexw64 M /trunk/spm_gamrnd.mexw64 M /trunk/spm_get_lm.mexw64 M /trunk/spm_global.mexw64 M /trunk/spm_hist.mexw64 M /trunk/spm_hist2.mexw64 M /trunk/spm_jsonread.mexw64 M /trunk/spm_krutil.mexw64 M /trunk/spm_mesh_reduce.mexw64 M /trunk/spm_mesh_utils.mexw64 M /trunk/spm_mrf.mexw64 M /trunk/spm_project.mexw64 M /trunk/spm_render_vol.mexw64 M /trunk/spm_resels_vol.mexw64 M /trunk/spm_sample_vol.mexw64 M /trunk/spm_slice_vol.mexw64 M /trunk/spm_unlink.mexw64 M /trunk/spm_voronoi.mexw64 M /trunk/toolbox/FieldMap/pm_create_connectogram_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_estimate_ramp.mexw64 M /trunk/toolbox/FieldMap/pm_ff_unwrap.mexw64 M /trunk/toolbox/FieldMap/pm_invert_phasemap_dtj.mexw64 M /trunk/toolbox/FieldMap/pm_merge_regions.mexw64 M /trunk/toolbox/FieldMap/pm_pad.mexw64 M /trunk/toolbox/FieldMap/pm_restore_ramp.mexw64 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw64 Compilation with MATLAB R2007a (7.4), Visual Studio 2005 x64 and Windows XP Pro x64 SP2 ------------------------------------------------------------------------ r7695 | spm | 2019-11-15 17:30:10 +0000 (Fri, 15 Nov 2019) | 1 line Changed paths: M /trunk/@file_array/private/file2mat.mexw32 M /trunk/@file_array/private/init.mexw32 M /trunk/@file_array/private/mat2file.mexw32 M /trunk/external/bemcp/bem_Cii_cog.mexw32 M /trunk/external/bemcp/bem_Cii_cst.mexw32 M /trunk/external/bemcp/bem_Cii_lin.mexw32 M /trunk/external/bemcp/bem_Cij_cog.mexw32 M /trunk/external/bemcp/bem_Cij_cst.mexw32 M /trunk/external/bemcp/bem_Cij_lin.mexw32 M /trunk/external/bemcp/bem_Gi_cog.mexw32 M /trunk/external/bemcp/bem_Gi_vert.mexw32 M /trunk/external/fieldtrip/connectivity/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/external/stats/nanmean.mexw32 M /trunk/external/fieldtrip/external/stats/nanstd.mexw32 M /trunk/external/fieldtrip/external/stats/nansum.mexw32 M /trunk/external/fieldtrip/external/stats/nanvar.mexw32 M /trunk/external/fieldtrip/fileio/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/fileio/private/read_16bit.mexw32 M /trunk/external/fieldtrip/fileio/private/read_24bit.mexw32 M /trunk/external/fieldtrip/fileio/private/solid_angle.mexw32 M /trunk/external/fieldtrip/forward/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/forward/private/lmoutr.mexw32 M /trunk/external/fieldtrip/forward/private/meg_leadfield1.mexw32 M /trunk/external/fieldtrip/forward/private/plgndr.mexw32 M /trunk/external/fieldtrip/forward/private/ptriproj.mexw32 M /trunk/external/fieldtrip/forward/private/routlm.mexw32 M /trunk/external/fieldtrip/forward/private/solid_angle.mexw32 M /trunk/external/fieldtrip/inverse/private/ft_getopt.mexw32 M /trunk/external/fieldtrip/inverse/private/solid_angle.mexw32 M /trunk/external/fieldtrip/plotting/private/solid_angle.mexw32 M /trunk/external/fieldtrip/private/lmoutr.mexw32 M /trunk/external/fieldtrip/private/plgndr.mexw32 M /trunk/external/fieldtrip/private/ptriproj.mexw32 M /trunk/external/fieldtrip/private/routlm.mexw32 M /trunk/external/fieldtrip/private/solid_angle.mexw32 M /trunk/external/fieldtrip/utilities/ft_getopt.mexw32 M /trunk/external/fieldtrip/utilities/private/lmoutr.mexw32 M /trunk/external/fieldtrip/utilities/private/ptriproj.mexw32 M /trunk/spm_add.mexw32 M /trunk/spm_bsplinc.mexw32 M /trunk/spm_bsplins.mexw32 M /trunk/spm_bwlabel.mexw32 M /trunk/spm_cat.mexw32 M /trunk/spm_conv_vol.mexw32 M /trunk/spm_diffeo.mexw32 M /trunk/spm_dilate_erode.mexw32 M /trunk/spm_existfile.mexw32 M /trunk/spm_field.mexw32 M /trunk/spm_gamrnd.mexw32 M /trunk/spm_get_lm.mexw32 M /trunk/spm_global.mexw32 M /trunk/spm_hist.mexw32 M /trunk/spm_hist2.mexw32 M /trunk/spm_jsonread.mexw32 M /trunk/spm_krutil.mexw32 M /trunk/spm_mesh_reduce.mexw32 M /trunk/spm_mesh_utils.mexw32 M /trunk/spm_mrf.mexw32 M /trunk/spm_project.mexw32 M /trunk/spm_render_vol.mexw32 M /trunk/spm_resels_vol.mexw32 M /trunk/spm_sample_vol.mexw32 M /trunk/spm_slice_vol.mexw32 M /trunk/spm_unlink.mexw32 M /trunk/spm_voronoi.mexw32 M /trunk/toolbox/OldNorm/spm_brainwarp.mexw32 Compilation with MATLAB R2008a (7.6), Microsoft Visual C++ 2005 (8.0) Express and Windows 7 SP1 32bit ------------------------------------------------------------------------ r7696 | spm | 2019-11-18 11:49:43 +0000 (Mon, 18 Nov 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/external/stats/nanmean.mexa64 M /trunk/external/fieldtrip/external/stats/nanstd.mexa64 M /trunk/external/fieldtrip/external/stats/nansum.mexa64 M /trunk/external/fieldtrip/external/stats/nanvar.mexa64 M /trunk/spm_diffeo.mexa64 M /trunk/spm_field.mexa64 M /trunk/spm_hist2.mexa64 Compilation with MATLAB R2007a, gcc 4.5.0 and OpenSUSE kernel 2.6.34-12 ------------------------------------------------------------------------ r7697 | spm | 2019-11-18 12:12:02 +0000 (Mon, 18 Nov 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/external/stats/nanmean.mexmaci64 M /trunk/external/fieldtrip/external/stats/nanstd.mexmaci64 M /trunk/external/fieldtrip/external/stats/nansum.mexmaci64 M /trunk/external/fieldtrip/external/stats/nanvar.mexmaci64 M /trunk/spm_diffeo.mexmaci64 M /trunk/spm_field.mexmaci64 M /trunk/spm_hist2.mexmaci64 Compilation with MATLAB R2017a, Clang 6.0 and OS X 10.9.5 ------------------------------------------------------------------------ r7698 | guillaume | 2019-11-19 15:37:09 +0000 (Tue, 19 Nov 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/utilities/ft_version.m M /trunk/spm_conv.m Backward compatibility with old MATLAB versions. ------------------------------------------------------------------------ r7699 | yael | 2019-11-20 16:00:03 +0000 (Wed, 20 Nov 2019) | 1 line Changed paths: M /trunk/src/shoot_diffeo3d.c Bug fix: inner loop variable must be private ------------------------------------------------------------------------ r7700 | john | 2019-11-21 17:09:15 +0000 (Thu, 21 Nov 2019) | 6 lines Changed paths: M /trunk/config/spm_cfg_deformations.m M /trunk/spm_deformations.m M /trunk/src/Makefile M /trunk/src/shoot_expm3.c M /trunk/src/shoot_invdef.c * Made changes to enable easier compiling of libSPM.so * Added options to the "deformations utility" to enable more accurate warping of categorical data. While much slower than nearest neighbour interpolation, warping a binary version of each unique label class and generating a map of the most probable label seems to give much nicer results. ------------------------------------------------------------------------ r7701 | vladimir | 2019-11-21 21:50:17 +0000 (Thu, 21 Nov 2019) | 1 line Changed paths: M /trunk/spm_eeg_correct_sensor_data.m Bug fix (thanks to Gareth). ------------------------------------------------------------------------ r7702 | guillaume | 2019-11-22 11:32:26 +0000 (Fri, 22 Nov 2019) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_dipfit.m M /trunk/spm_eeg_inv_checkforward.m M /trunk/spm_eeg_inv_forward.m M /trunk/spm_eeg_inv_get_vol_sens.m M /trunk/spm_eeg_inv_vb_ecd_gui.m M /trunk/spm_eeg_inv_vbecd_gui.m M /trunk/spm_eeg_lgainmat.m M /trunk/spm_eeg_spatial_confounds.m M /trunk/toolbox/MEEGtools/spm_eeg_dipole_waveforms.m M /trunk/toolbox/MEEGtools/spm_eeg_ft_dipolefitting.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp_dipfit.m Bug fix: ft_read_vol has been renamed ft_read_headmodel in FieldTrip. ------------------------------------------------------------------------ r7703 | guillaume | 2019-11-22 12:06:29 +0000 (Fri, 22 Nov 2019) | 2 lines Changed paths: A /trunk/toolbox/DAiSS A /trunk/toolbox/DAiSS/batch_group_GALA_data_sources.m A /trunk/toolbox/DAiSS/batch_group_GALA_write.m A /trunk/toolbox/DAiSS/bf_copy.m A /trunk/toolbox/DAiSS/bf_data.m A /trunk/toolbox/DAiSS/bf_example_samgam_mv.m A /trunk/toolbox/DAiSS/bf_features.m A /trunk/toolbox/DAiSS/bf_features_contcov.m A /trunk/toolbox/DAiSS/bf_features_cov.m A /trunk/toolbox/DAiSS/bf_features_cov_bysamples.m A /trunk/toolbox/DAiSS/bf_features_csd.m A /trunk/toolbox/DAiSS/bf_features_identity.m A /trunk/toolbox/DAiSS/bf_features_regmulticov.m A /trunk/toolbox/DAiSS/bf_features_vbfa.m A /trunk/toolbox/DAiSS/bf_group.m A /trunk/toolbox/DAiSS/bf_group_GALA.m A /trunk/toolbox/DAiSS/bf_group_batch.m A /trunk/toolbox/DAiSS/bf_group_functionalROI.m A /trunk/toolbox/DAiSS/bf_inverse.m A /trunk/toolbox/DAiSS/bf_inverse_champagne.m A /trunk/toolbox/DAiSS/bf_inverse_deflect.m A /trunk/toolbox/DAiSS/bf_inverse_dics.m A /trunk/toolbox/DAiSS/bf_inverse_eloreta.m A /trunk/toolbox/DAiSS/bf_inverse_lcmv.m A /trunk/toolbox/DAiSS/bf_inverse_lcmv_multicov.m A /trunk/toolbox/DAiSS/bf_inverse_minimumnorm.m A /trunk/toolbox/DAiSS/bf_inverse_nutmeg.m A /trunk/toolbox/DAiSS/bf_load.m A /trunk/toolbox/DAiSS/bf_output.m A /trunk/toolbox/DAiSS/bf_output_PLI.m A /trunk/toolbox/DAiSS/bf_output_image_cfGLM.m A /trunk/toolbox/DAiSS/bf_output_image_dics.m A /trunk/toolbox/DAiSS/bf_output_image_filtcorr.m A /trunk/toolbox/DAiSS/bf_output_image_gain.m A /trunk/toolbox/DAiSS/bf_output_image_kurtosis.m A /trunk/toolbox/DAiSS/bf_output_image_mv.m A /trunk/toolbox/DAiSS/bf_output_image_pac.m A /trunk/toolbox/DAiSS/bf_output_image_powcorr.m A /trunk/toolbox/DAiSS/bf_output_image_power.m A /trunk/toolbox/DAiSS/bf_output_image_sensitivity.m A /trunk/toolbox/DAiSS/bf_output_montage.m A /trunk/toolbox/DAiSS/bf_output_sourcedata_robust.m A /trunk/toolbox/DAiSS/bf_pipeline_Champagne.m A /trunk/toolbox/DAiSS/bf_pipeline_DICS_coherence.m A /trunk/toolbox/DAiSS/bf_pipeline_DICS_power.m A /trunk/toolbox/DAiSS/bf_pipeline_DeFlect.m A /trunk/toolbox/DAiSS/bf_pipeline_GALA.m A /trunk/toolbox/DAiSS/bf_pipeline_LCMV_all_mesh_sources.m A /trunk/toolbox/DAiSS/bf_pipeline_LCMV_imaging.m A /trunk/toolbox/DAiSS/bf_pipeline_LCMV_source_extraction.m A /trunk/toolbox/DAiSS/bf_pipeline_MVAR_activation_vs_baseline.m A /trunk/toolbox/DAiSS/bf_pipeline_MVAR_two_conditions.m A /trunk/toolbox/DAiSS/bf_pipeline_Minimum_Norm.m A /trunk/toolbox/DAiSS/bf_pipeline_eLORETA.m A /trunk/toolbox/DAiSS/bf_regularise_mantrunc.m A /trunk/toolbox/DAiSS/bf_regularise_manual.m A /trunk/toolbox/DAiSS/bf_regularise_minkatrunc.m A /trunk/toolbox/DAiSS/bf_regularise_roi.m A /trunk/toolbox/DAiSS/bf_regularise_tichonov_rankdef.m A /trunk/toolbox/DAiSS/bf_save.m A /trunk/toolbox/DAiSS/bf_save_path.m A /trunk/toolbox/DAiSS/bf_slides.pdf A /trunk/toolbox/DAiSS/bf_sources.m A /trunk/toolbox/DAiSS/bf_sources_grid.m A /trunk/toolbox/DAiSS/bf_sources_grid_phantom.m A /trunk/toolbox/DAiSS/bf_sources_mesh.m A /trunk/toolbox/DAiSS/bf_sources_mni_coords.m A /trunk/toolbox/DAiSS/bf_sources_voi.m A /trunk/toolbox/DAiSS/bf_std_fields.m A /trunk/toolbox/DAiSS/bf_write.m A /trunk/toolbox/DAiSS/bf_write_gifti.m A /trunk/toolbox/DAiSS/bf_write_nifti.m A /trunk/toolbox/DAiSS/bf_write_spmeeg.m A /trunk/toolbox/DAiSS/private A /trunk/toolbox/DAiSS/private/DeFleCT.m A /trunk/toolbox/DAiSS/private/GALA_calculate_distance.m A /trunk/toolbox/DAiSS/private/GALA_clustering.m A /trunk/toolbox/DAiSS/private/GALA_find_localmin.m A /trunk/toolbox/DAiSS/private/GALA_invert.m A /trunk/toolbox/DAiSS/private/MNestimator.m A /trunk/toolbox/DAiSS/private/Tikhonov_rank_def.m A /trunk/toolbox/DAiSS/private/bf_fuse_lf.m A /trunk/toolbox/DAiSS/private/champagne_aug2015.m A /trunk/toolbox/DAiSS/private/ft_inverse_beamformer_dics.m A /trunk/toolbox/DAiSS/private/gen_bf_ttest.m A /trunk/toolbox/DAiSS/private/get_components.m A /trunk/toolbox/DAiSS/private/get_data_features.m A /trunk/toolbox/DAiSS/private/mkfilt_eloreta_v2.m A /trunk/toolbox/DAiSS/private/nut_dSPM.m A /trunk/toolbox/DAiSS/private/nut_sLORETA.m A /trunk/toolbox/DAiSS/private/nut_swLORETA.m A /trunk/toolbox/DAiSS/private/output_image_mv_cva.m A /trunk/toolbox/DAiSS/private/pinv_plus.m A /trunk/toolbox/DAiSS/private/spm_pca_order.m A /trunk/toolbox/DAiSS/private/vbfa_aug2015.m A /trunk/toolbox/DAiSS/spm_beamforming.m A /trunk/toolbox/DAiSS/tbx_cfg_bf.m A /trunk/toolbox/TSSS A /trunk/toolbox/TSSS/TSSS.pdf A /trunk/toolbox/TSSS/private A /trunk/toolbox/TSSS/private/Sin_vsh_ctf.m A /trunk/toolbox/TSSS/private/Sin_vsh_ctf_fast.m A /trunk/toolbox/TSSS/private/Sin_vsh_fast.m A /trunk/toolbox/TSSS/private/Sout_vsh_ctf.m A /trunk/toolbox/TSSS/private/Sout_vsh_ctf_fast.m A /trunk/toolbox/TSSS/private/Sout_vsh_fast.m A /trunk/toolbox/TSSS/private/basis_condition_adjustment.m A /trunk/toolbox/TSSS/private/fiff_getpos.m A /trunk/toolbox/TSSS/private/fiff_getpos_ctf.m A /trunk/toolbox/TSSS/private/ft_getpos.m A /trunk/toolbox/TSSS/private/origheader_getpos.m A /trunk/toolbox/TSSS/private/spharm.m A /trunk/toolbox/TSSS/private/spharm_fast.m A /trunk/toolbox/TSSS/private/tsss_rawdata_enm.m A /trunk/toolbox/TSSS/private/vsh_modified_in.m A /trunk/toolbox/TSSS/private/vsh_modified_in_fast.m A /trunk/toolbox/TSSS/private/vsh_modified_out.m A /trunk/toolbox/TSSS/private/vsh_modified_out_fast.m A /trunk/toolbox/TSSS/tbx_cfg_tsss.m A /trunk/toolbox/TSSS/tsss_config.m A /trunk/toolbox/TSSS/tsss_config_momentspace.m A /trunk/toolbox/TSSS/tsss_spm_enm.m A /trunk/toolbox/TSSS/tsss_spm_momentspace.m New feature: Adding DAiSS and TSSS toolboxes. ------------------------------------------------------------------------ r7704 | Amir | 2019-11-22 14:34:09 +0000 (Fri, 22 Nov 2019) | 1 line Changed paths: A /trunk/toolbox/mm A /trunk/toolbox/mm/spm_dcm_mm.m A /trunk/toolbox/mm/spm_dcm_mm_nd.m A /trunk/toolbox/mm/spm_dcm_mm_priors.m A /trunk/toolbox/mm/spm_dcm_mm_specify.m A /trunk/toolbox/mm/spm_fx_cmc_tfm_gen.m A /trunk/toolbox/mm/spm_gen_par.m A /trunk/toolbox/mm/spm_mm_gen.m added multimodal DCM for fMRI and M/EEG. ------------------------------------------------------------------------ r7705 | spm | 2019-11-22 15:06:38 +0000 (Fri, 22 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/mm/spm_dcm_mm.m M /trunk/toolbox/mm/spm_dcm_mm_nd.m M /trunk/toolbox/mm/spm_dcm_mm_priors.m M /trunk/toolbox/mm/spm_dcm_mm_specify.m M /trunk/toolbox/mm/spm_fx_cmc_tfm_gen.m M /trunk/toolbox/mm/spm_gen_par.m M /trunk/toolbox/mm/spm_mm_gen.m Doc: fix SVN properties ------------------------------------------------------------------------ r7706 | spm | 2019-11-22 16:30:29 +0000 (Fri, 22 Nov 2019) | 2 lines Changed paths: M /trunk/toolbox/DAiSS/bf_group_functionalROI.m M /trunk/toolbox/DAiSS/bf_inverse_eloreta.m M /trunk/toolbox/DAiSS/bf_output_PLI.m M /trunk/toolbox/DAiSS/private/mkfilt_eloreta_v2.m Doc: fix text encoding. ------------------------------------------------------------------------ r7707 | vladimir | 2019-11-23 10:25:50 +0000 (Sat, 23 Nov 2019) | 1 line Changed paths: M /trunk/external/fieldtrip/utilities/ft_datatype_sens.m temporary fix for the FT bug ------------------------------------------------------------------------ r7708 | spm | 2019-11-25 10:13:07 +0000 (Mon, 25 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/mm/spm_dcm_mm.m M /trunk/toolbox/mm/spm_dcm_mm_specify.m M /trunk/toolbox/mm/spm_fx_cmc_tfm_gen.m M /trunk/toolbox/mm/spm_gen_par.m M /trunk/toolbox/mm/spm_mm_gen.m Doc: fixing SVN properties ------------------------------------------------------------------------ r7709 | Amir | 2019-11-25 10:38:51 +0000 (Mon, 25 Nov 2019) | 1 line Changed paths: A /trunk/spm_dcm_nvc.m A /trunk/spm_dcm_nvc_nd.m A /trunk/spm_dcm_nvc_priors.m A /trunk/spm_dcm_nvc_specify.m A /trunk/spm_fx_cmc_tfm_gen.m A /trunk/spm_gen_par.m A /trunk/spm_nvc_gen.m multimodal DCM for fMRI and M/EEG ------------------------------------------------------------------------ r7710 | Amir | 2019-11-25 10:41:05 +0000 (Mon, 25 Nov 2019) | 1 line Changed paths: A /trunk/toolbox/NVC A /trunk/toolbox/NVC/spm_dcm_nvc.m A /trunk/toolbox/NVC/spm_dcm_nvc_nd.m A /trunk/toolbox/NVC/spm_dcm_nvc_priors.m A /trunk/toolbox/NVC/spm_dcm_nvc_specify.m A /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m A /trunk/toolbox/NVC/spm_gen_par.m A /trunk/toolbox/NVC/spm_nvc_gen.m multimodal DCM for fMRI and M/EEG ------------------------------------------------------------------------ r7711 | Amir | 2019-11-25 10:46:15 +0000 (Mon, 25 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc_specify.m M /trunk/toolbox/NVC/spm_gen_par.m ------------------------------------------------------------------------ r7712 | peter | 2019-11-25 14:39:10 +0000 (Mon, 25 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc.m M /trunk/toolbox/NVC/spm_dcm_nvc_nd.m M /trunk/toolbox/NVC/spm_dcm_nvc_priors.m M /trunk/toolbox/NVC/spm_dcm_nvc_specify.m M /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m M /trunk/toolbox/NVC/spm_gen_par.m M /trunk/toolbox/NVC/spm_nvc_gen.m Initial minor tidy-up of the neurovascular code. Made alignment of help text consistent, ensured variable names are lower case, finessed input validation. ------------------------------------------------------------------------ r7713 | spm | 2019-11-25 16:00:34 +0000 (Mon, 25 Nov 2019) | 2 lines Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc.m M /trunk/toolbox/NVC/spm_dcm_nvc_nd.m M /trunk/toolbox/NVC/spm_dcm_nvc_priors.m M /trunk/toolbox/NVC/spm_dcm_nvc_specify.m M /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m M /trunk/toolbox/NVC/spm_gen_par.m M /trunk/toolbox/NVC/spm_nvc_gen.m D /trunk/toolbox/mm Doc: SVN properties again... ------------------------------------------------------------------------ r7714 | spm | 2019-11-26 11:25:50 +0000 (Tue, 26 Nov 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/fileio/ft_read_event.m M /trunk/external/fieldtrip/fileio/ft_read_headshape.m M /trunk/spm_conv.m M /trunk/spm_dicom_convert.m M /trunk/spm_eeg_inv_vb_ecd_gui.m M /trunk/spm_find_pC.m M /trunk/spm_nlsi_GN_H.m Enhancements: MATLAB backward compatibility. ------------------------------------------------------------------------ r7715 | spm | 2019-11-26 11:52:26 +0000 (Tue, 26 Nov 2019) | 2 lines Changed paths: D /trunk/spm_dcm_nvc.m D /trunk/spm_dcm_nvc_nd.m D /trunk/spm_dcm_nvc_priors.m D /trunk/spm_dcm_nvc_specify.m D /trunk/spm_fx_cmc_tfm_gen.m D /trunk/spm_gen_par.m D /trunk/spm_nvc_gen.m Fix: revert changeset r7709. ------------------------------------------------------------------------ r7716 | guillaume | 2019-11-26 17:06:46 +0000 (Tue, 26 Nov 2019) | 2 lines Changed paths: M /trunk/config/spm_run_con.m M /trunk/spm_conman.m M /trunk/spm_contrasts.m M /trunk/spm_fmri_spm_ui.m M /trunk/spm_spm.m Enhancement: switch to version 7.3 when saving SPM.mat if the SPM variable is greater than 2GB. ------------------------------------------------------------------------ r7717 | peter | 2019-11-27 11:10:36 +0000 (Wed, 27 Nov 2019) | 1 line Changed paths: M /trunk/spm_dcm_bmr_all.m Change to spm_dcm_bmr_all.m to clear out provided DCM.F, as it loses its meaning in the returned model average ------------------------------------------------------------------------ r7718 | john | 2019-11-27 11:18:53 +0000 (Wed, 27 Nov 2019) | 5 lines Changed paths: M /trunk/toolbox/Shoot/spm_shoot_template.m * Sorted out the image orientations of deformations, velocity fields and Jacobian maps. These are all now in the space of the template, which is in the same space as the first volume used. Hopefully, it should now behave better for non-imported tissue maps. ------------------------------------------------------------------------ r7719 | guillaume | 2019-11-27 12:38:55 +0000 (Wed, 27 Nov 2019) | 2 lines Changed paths: M /trunk/spm_check_installation.m Enhancement: platform-specific messages for MEX compilation. ------------------------------------------------------------------------ r7720 | peter | 2019-11-27 12:45:04 +0000 (Wed, 27 Nov 2019) | 1 line Changed paths: M /trunk/spm_dcm_peb.m M /trunk/tests/test_spm_dcm_peb.m Change to spm_dcm_peb.m to accommodate different subjects having different priors, by taking the arithmetic mean of the priors (+ code prettification) ------------------------------------------------------------------------ r7721 | guillaume | 2019-11-27 13:03:32 +0000 (Wed, 27 Nov 2019) | 2 lines Changed paths: M /trunk/spm_hrf.m Doc: expand description of the parameters of the haemodynamic response function. Thanks to Wiktor O. ------------------------------------------------------------------------ r7722 | peter | 2019-11-27 17:18:56 +0000 (Wed, 27 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_gen_par.m Minor update to NVC (neurovascular coupling): removed unused code from spm_gen_par.m ------------------------------------------------------------------------ r7723 | john | 2019-11-27 18:12:41 +0000 (Wed, 27 Nov 2019) | 2 lines Changed paths: M /trunk/src/shoot_regularisers.c * Added Yael's documentation. ------------------------------------------------------------------------ r7724 | guillaume | 2019-11-28 11:26:53 +0000 (Thu, 28 Nov 2019) | 2 lines Changed paths: M /trunk/src/Makefile Bug fix: `make install` should also call `tbx-all`. ------------------------------------------------------------------------ r7725 | guillaume | 2019-11-28 11:28:44 +0000 (Thu, 28 Nov 2019) | 2 lines Changed paths: M /trunk/spm_list.m Doc: use ASCII E instead of \equiv for equivalent Z score. ------------------------------------------------------------------------ r7726 | guillaume | 2019-11-28 12:18:12 +0000 (Thu, 28 Nov 2019) | 2 lines Changed paths: M /trunk/help/js/plotly.min.js M /trunk/help/js/showdown.min.js Update plotly.js and showdown.js to 1.51.2 and 1.9.1 respectively. ------------------------------------------------------------------------ r7727 | guillaume | 2019-11-28 15:35:49 +0000 (Thu, 28 Nov 2019) | 1 line Changed paths: M /trunk/spm_Menu.m Enhancement: change default background colour on Windows. ------------------------------------------------------------------------ r7728 | peter | 2019-11-28 15:57:25 +0000 (Thu, 28 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m Minor update to NVC (neurovascular coupling): tidied up spm_fx_cmc_tfm_gen.m ------------------------------------------------------------------------ r7729 | spm | 2019-11-28 17:16:49 +0000 (Thu, 28 Nov 2019) | 2 lines Changed paths: M /trunk/spm_Menu.fig Doc: change size of text panels. ------------------------------------------------------------------------ r7730 | spm | 2019-11-28 17:23:43 +0000 (Thu, 28 Nov 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/fileio/private/read_biosemi_bdf.m Bug fix: compatibility with old MATLAB versions. ------------------------------------------------------------------------ r7731 | peter | 2019-11-28 17:53:00 +0000 (Thu, 28 Nov 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc_nd.m Minor update to NVC (neurovascular coupling): tidied up spm_dcm_nvc_nd.m ------------------------------------------------------------------------ r7732 | guillaume | 2019-11-29 12:26:49 +0000 (Fri, 29 Nov 2019) | 2 lines Changed paths: M /trunk/spm_check_installation.m Enhancement: update list of core toolboxes. ------------------------------------------------------------------------ r7733 | guillaume | 2019-11-29 17:31:10 +0000 (Fri, 29 Nov 2019) | 2 lines Changed paths: M /trunk/spm_check_installation.m Enhancement: convert text to UTF-8 if necessary. ------------------------------------------------------------------------ r7734 | peter | 2019-12-01 22:15:22 +0000 (Sun, 01 Dec 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc.m M /trunk/toolbox/NVC/spm_dcm_nvc_specify.m M /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m M /trunk/toolbox/NVC/spm_gen_par.m Minor update to NVC (neurovascular coupling): misc further tidy-up ------------------------------------------------------------------------ r7735 | peter | 2019-12-02 09:15:27 +0000 (Mon, 02 Dec 2019) | 1 line Changed paths: M /trunk/toolbox/NVC/spm_dcm_nvc.m M /trunk/toolbox/NVC/spm_dcm_nvc_specify.m M /trunk/toolbox/NVC/spm_fx_cmc_tfm_gen.m Additional tidy-up of help text and variable names in NVC code ------------------------------------------------------------------------ r7736 | guillaume | 2019-12-02 10:48:44 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/AUTHORS.txt M /trunk/man/manual.pdf M /trunk/man/manual.tex Doc: update authors list and manual. ------------------------------------------------------------------------ r7737 | guillaume | 2019-12-02 10:50:47 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/ft_prepare_layout.m Bug fix: backward compatibility. ------------------------------------------------------------------------ r7738 | guillaume | 2019-12-02 12:45:37 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/config/spm_run_con.m M /trunk/spm_conman.m M /trunk/spm_contrasts.m M /trunk/spm_fmri_spm_ui.m M /trunk/spm_spm.m Bug fix: used incorrect flag in r7716. Thanks to David A. ------------------------------------------------------------------------ r7739 | guillaume | 2019-12-02 14:00:18 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/config/spm_run_factorial_design.m M /trunk/config/spm_run_fmri_data.m M /trunk/config/spm_run_fmri_spec.m M /trunk/spm_eeg_firstlevel.m M /trunk/spm_fMRI_design.m M /trunk/spm_mfx.m M /trunk/spm_spm_Bayes.m M /trunk/spm_spm_vb.m Enhancement: apply r7716 whenever an SPM.mat file is saved. ------------------------------------------------------------------------ r7740 | guillaume | 2019-12-02 14:06:41 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/toolbox/MEEGtools M /trunk/toolbox/MEEGtools/spm_mesh_pack_points.m Doc: Remove SVN properties on MEEGtools directory. ------------------------------------------------------------------------ r7741 | spm | 2019-12-02 15:59:14 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/compat/matlablt2010b/iscolumn.m M /trunk/external/fieldtrip/compat/matlablt2010b/ismatrix.m M /trunk/external/fieldtrip/compat/matlablt2010b/isrow.m M /trunk/external/fieldtrip/compat/matlablt2011b/narginchk.m M /trunk/external/fieldtrip/compat/matlablt2012a/isequaln.m M /trunk/external/fieldtrip/compat/matlablt2013b/istable.m M /trunk/external/fieldtrip/compat/matlablt2016b/contains.m M /trunk/external/fieldtrip/compat/matlablt2016b/endsWith.m M /trunk/external/fieldtrip/compat/matlablt2016b/newline.m M /trunk/external/fieldtrip/compat/matlablt2016b/pad.m M /trunk/external/fieldtrip/compat/matlablt2016b/startsWith.m M /trunk/external/fieldtrip/compat/matlablt2017b/isfile.m M /trunk/external/fieldtrip/compat/matlablt2017b/isfolder.m A /trunk/external/fieldtrip/compat/matlablt2018a A /trunk/external/fieldtrip/compat/matlablt2018a/removevars.m Updating FieldTrip's compat directory. ------------------------------------------------------------------------ r7742 | spm | 2019-12-02 16:33:10 +0000 (Mon, 02 Dec 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/compat/matlablt2010b/iscolumn.m M /trunk/external/fieldtrip/compat/matlablt2010b/ismatrix.m M /trunk/external/fieldtrip/compat/matlablt2010b/isrow.m M /trunk/external/fieldtrip/compat/matlablt2011b/narginchk.m M /trunk/external/fieldtrip/compat/matlablt2012a/isequaln.m M /trunk/external/fieldtrip/compat/matlablt2013b/istable.m M /trunk/external/fieldtrip/compat/matlablt2016b/contains.m M /trunk/external/fieldtrip/compat/matlablt2016b/endsWith.m M /trunk/external/fieldtrip/compat/matlablt2016b/newline.m M /trunk/external/fieldtrip/compat/matlablt2016b/pad.m M /trunk/external/fieldtrip/compat/matlablt2016b/startsWith.m M /trunk/external/fieldtrip/compat/matlablt2017b/isfile.m M /trunk/external/fieldtrip/compat/matlablt2017b/isfolder.m M /trunk/external/fieldtrip/compat/matlablt2018a/removevars.m Doc: Shorter warning message from FieldTrip. ------------------------------------------------------------------------ r7743 | guillaume | 2019-12-02 17:13:23 +0000 (Mon, 02 Dec 2019) | 1 line Changed paths: M /trunk/spm_browser.m Enhancement: check SPM_HTML_BROWSER environment variable before displaying HTML. ------------------------------------------------------------------------ r7744 | guillaume | 2019-12-03 12:38:47 +0000 (Tue, 03 Dec 2019) | 2 lines Changed paths: M /trunk/@nifti/cifti.m M /trunk/@nifti/nifti.m M /trunk/@nifti/subsasgn.m M /trunk/@xmltree/char.m M /trunk/spm_ROI.m M /trunk/spm_copy.m M /trunk/spm_figure.m M /trunk/spm_jobman.m Enhancements: backlog of small changes. ------------------------------------------------------------------------ r7745 | gareth | 2019-12-03 14:55:56 +0000 (Tue, 03 Dec 2019) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg.m M /trunk/config/spm_cfg_eeg_dipfit.m A /trunk/config/spm_cfg_eeg_momentfit.m New moment fitting routine. Plus corrected error which led to incorrect conversion of prior moment (in dipfit routine) to meg space. ------------------------------------------------------------------------ r7746 | spm | 2019-12-03 17:07:20 +0000 (Tue, 03 Dec 2019) | 2 lines Changed paths: M /trunk/config/spm_cfg_eeg_momentfit.m Doc: fix SVN properties. ------------------------------------------------------------------------ r7747 | guillaume | 2019-12-04 13:46:22 +0000 (Wed, 04 Dec 2019) | 2 lines Changed paths: M /trunk/spm_figure.m Enhancement: change position of the About figure. ------------------------------------------------------------------------ r7748 | guillaume | 2019-12-04 17:07:43 +0000 (Wed, 04 Dec 2019) | 2 lines Changed paths: M /trunk/external/fieldtrip/ft_eventtiminganalysis.m M /trunk/external/fieldtrip/ft_prepare_layout.m M /trunk/external/fieldtrip/ft_prepare_neighbours.m M /trunk/external/fieldtrip/ft_timelockanalysis.m M /trunk/external/fieldtrip/xdf2fieldtrip.m Bug fix: backward compatibility. ------------------------------------------------------------------------ r7749 | guillaume | 2019-12-05 17:05:46 +0000 (Thu, 05 Dec 2019) | 2 lines Changed paths: M /trunk/spm_conv_full.m M /trunk/spm_hanning.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/dcm_meeg/spm_dcm_erp_data.m M /trunk/toolbox/dcm_meeg/spm_dcm_tfm_data.m M /trunk/toolbox/spectral/spm_csd.m Enhancement: remove dependency to stats toolbox. ------------------------------------------------------------------------ r7750 | spm | 2019-12-05 17:54:29 +0000 (Thu, 05 Dec 2019) | 2 lines Changed paths: M /trunk/toolbox/DEM/spm_voice.m M /trunk/toolbox/DEM/spm_voice_FS.m M /trunk/toolbox/DEM/spm_voice_P300.m M /trunk/toolbox/DEM/spm_voice_Q.m M /trunk/toolbox/DEM/spm_voice_check.m M /trunk/toolbox/DEM/spm_voice_dct.m M /trunk/toolbox/DEM/spm_voice_ff.m M /trunk/toolbox/DEM/spm_voice_filter.m M /trunk/toolbox/DEM/spm_voice_frequency.m M /trunk/toolbox/DEM/spm_voice_fundamental.m M /trunk/toolbox/DEM/spm_voice_get_LEX.m M /trunk/toolbox/DEM/spm_voice_get_next.m M /trunk/toolbox/DEM/spm_voice_get_word.m M /trunk/toolbox/DEM/spm_voice_get_xY.m M /trunk/toolbox/DEM/spm_voice_i.m M /trunk/toolbox/DEM/spm_voice_iQ.m M /trunk/toolbox/DEM/spm_voice_identity.m M /trunk/toolbox/DEM/spm_voice_iff.m M /trunk/toolbox/DEM/spm_voice_likelihood.m M /trunk/toolbox/DEM/spm_voice_onset.m M /trunk/toolbox/DEM/spm_voice_onsets.m M /trunk/toolbox/DEM/spm_voice_read.m M /trunk/toolbox/DEM/spm_voice_repeat.m M /trunk/toolbox/DEM/spm_voice_segmentation.m M /trunk/toolbox/DEM/spm_voice_speak.m M /trunk/toolbox/DEM/spm_voice_test.m M /trunk/toolbox/DEM/spm_voice_warp.m Doc: help text. ------------------------------------------------------------------------ r7751 | peter | 2019-12-06 11:59:09 +0000 (Fri, 06 Dec 2019) | 1 line Changed paths: M /trunk/spm_dcm_csd_Q.m D /trunk/toolbox/dcm_meeg/spm_dcm_csd_Q.m Resolved duplicate spm_dcm_csd_Q.m by moving the more recent MEG version to the root SPM folder. ------------------------------------------------------------------------ r7752 | guillaume | 2019-12-13 12:58:59 +0000 (Fri, 13 Dec 2019) | 1 line Changed paths: A /trunk/external/fieldtrip/compat/incorrect/ft_check_path.m M /trunk/external/fieldtrip/compat/matlablt2010b/isrow.m M /trunk/spm_check_installation.m Enhancement: trying to detect early on if "Add with subfolders" was used. ------------------------------------------------------------------------ r7753 | karl | 2019-12-16 10:48:08 +0000 (Mon, 16 Dec 2019) | 1 line Changed paths: A /trunk/toolbox/DEM/DEM_demo_MDP_XX.m A /trunk/toolbox/DEM/spm_MDP_VB_XX.m development ------------------------------------------------------------------------ r7754 | spm | 2019-12-16 11:29:51 +0000 (Mon, 16 Dec 2019) | 2 lines Changed paths: M /trunk/toolbox/DEM/DEM_demo_MDP_XX.m M /trunk/toolbox/DEM/spm_MDP_VB_XX.m M /trunk/toolbox/DEM/spm_voice.m Doc: fix text encoding. ------------------------------------------------------------------------ r7755 | spm | 2019-12-16 13:19:28 +0000 (Mon, 16 Dec 2019) | 2 lines Changed paths: M /trunk/spm_Menu.m M /trunk/spm_browser.m M /trunk/spm_dcm_fit.m M /trunk/spm_dicom_headers.m M /trunk/spm_eeg_dipoles_ui.m M /trunk/spm_eeg_montage_ui.m A /trunk/toolbox/DAiSS/spm_DAiSS.m M /trunk/toolbox/DAiSS/tbx_cfg_bf.m M /trunk/toolbox/DEM/MDP_Heart_Beat.m M /trunk/toolbox/dcm_meeg/spm_mmc_priors.m Doc: tabs, svn properties and wrapper function for DAiSS ------------------------------------------------------------------------ r7756 | guillaume | 2019-12-16 14:55:47 +0000 (Mon, 16 Dec 2019) | 2 lines Changed paths: M /trunk/src/Makefile Fix typo in Makefile. ------------------------------------------------------------------------ r7757 | spm | 2019-12-16 15:36:06 +0000 (Mon, 16 Dec 2019) | 2 lines Changed paths: M /trunk/spm_eeg_lgainmat.m Enhancement: FieldTrip compatibility. ------------------------------------------------------------------------ r7758 | guillaume | 2019-12-16 16:04:25 +0000 (Mon, 16 Dec 2019) | 2 lines Changed paths: M /trunk/@nifti/nifti.m Enhancement: comment out slow input test. ------------------------------------------------------------------------ r7759 | guillaume | 2019-12-19 11:50:50 +0000 (Thu, 19 Dec 2019) | 2 lines Changed paths: M /trunk/spm_check_registration.m M /trunk/spm_orthviews/spm_ov_browser.m Enhancement: create movie even if -noFigureWindows was used. ------------------------------------------------------------------------ r7760 | karl | 2019-12-29 17:45:58 +0000 (Sun, 29 Dec 2019) | 1 line Changed paths: M /trunk/spm_kron.m M /trunk/toolbox/DEM/DEM_demo_MDP_XX.m M /trunk/toolbox/DEM/spm_MDP_VB_LFP.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_XX.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_VB_trial.m Addition of belief propagation scheme for active inference (with T-maze) demo ------------------------------------------------------------------------ r7761 | karl | 2019-12-29 17:48:04 +0000 (Sun, 29 Dec 2019) | 1 line Changed paths: M /trunk/toolbox/DEM/VOX.mat M /trunk/toolbox/DEM/spm_voice.m minor changes to voice demo ------------------------------------------------------------------------ r7762 | gareth | 2020-01-02 14:53:10 +0000 (Thu, 02 Jan 2020) | 1 line Changed paths: A /trunk/spm_eeg_inv_vbecd_mom.m A /trunk/spm_eeg_wrap_momfit_vbecd.m helper functions for dipole moment fitting ------------------------------------------------------------------------ r7763 | gareth | 2020-01-02 15:01:38 +0000 (Thu, 02 Jan 2020) | 1 line Changed paths: M /trunk/config/spm_cfg_eeg_momentfit.m modified to fit current or magnetic dipoles ------------------------------------------------------------------------ r7764 | spm | 2020-01-02 15:34:03 +0000 (Thu, 02 Jan 2020) | 2 lines Changed paths: M /trunk/spm_eeg_inv_vbecd_mom.m M /trunk/spm_eeg_wrap_momfit_vbecd.m Doc: SVN properties ------------------------------------------------------------------------ r7765 | spm | 2020-01-02 16:29:48 +0000 (Thu, 02 Jan 2020) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/LICENCE.txt M /trunk/README.md M /trunk/help/index.html M /trunk/spm_Menu.fig Doc: mention 2020. ------------------------------------------------------------------------ r7766 | karl | 2020-01-05 21:37:39 +0000 (Sun, 05 Jan 2020) | 1 line Changed paths: M /trunk/toolbox/DEM/DEMO_MDP_maze.m A /trunk/toolbox/DEM/DEMO_MDP_maze_X.m M /trunk/toolbox/DEM/DEMO_MDP_questions.m M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m M /trunk/toolbox/DEM/DEM_demo_MDP_XX.m M /trunk/toolbox/DEM/spm_MDP_VB_X.m M /trunk/toolbox/DEM/spm_MDP_VB_XX.m M /trunk/toolbox/DEM/spm_MDP_VB_game.m M /trunk/toolbox/DEM/spm_MDP_check.m M /trunk/toolbox/DEM/spm_voice_get_xY.m Addition and development of belief propagation scheme for Markov decision processes (i.e. active inference) and addition of a belief propagation navigation demo ------------------------------------------------------------------------ r7767 | guillaume | 2020-01-06 15:14:59 +0000 (Mon, 06 Jan 2020) | 2 lines Changed paths: M /trunk/toolbox/DEM/DEM_demo.fig M /trunk/toolbox/DEM/DEM_demo.m Fix: replace uibuttongroup with uipanel and add tag for PDF axis. ------------------------------------------------------------------------ r7768 | spm | 2020-01-07 11:37:19 +0000 (Tue, 07 Jan 2020) | 2 lines Changed paths: M /trunk/spm_MB_col.m Enhancement: Backward compatibility with rng() ------------------------------------------------------------------------ r7769 | spm | 2020-01-13 11:04:36 +0000 (Mon, 13 Jan 2020) | 1 line Changed paths: M /trunk/man/ReleaseNotes.pdf M /trunk/man/manual.pdf Doc: new compilation of PDF manual ------------------------------------------------------------------------ r7770 | guillaume | 2020-01-13 11:26:14 +0000 (Mon, 13 Jan 2020) | 2 lines Changed paths: M /trunk/Contents.m M /trunk/spm_update.m Preparing the public release of SPM 12.6. ------------------------------------------------------------------------