% % % % automatically generated % % /home/spm/bin/bibtex2html -w biblio-will.cfg will.bib -use-html-links -copy-icons -icons -force % Date: Tue Feb 17 16:23:58 2009 % Author: wpenny % % % @BOOK{hbf2, PUBLISHER = {Academic Press}, TITLE = {Human Brain Function}, YEAR = {2003}, AUTHOR = {R.S.J. Frackowiak and K.J. Friston and C. Frith and R. Dolan and C.J. Price and S. Zeki and J. Ashburner and W.D. Penny}, ALTEDITOR = {}, OPTADDRESS = {}, EDITION = {2nd}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {introduction}, URL = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/} } @ARTICLE{androu_08, AUTHOR = {A G Androulidakis and P Mazzone and V Litvak and W Penny and M Dileone and L M F Doyle Gaynor and S Tisch and V Di Lazzaro and P Brown}, JOURNAL = {Exp Neurol}, TITLE = {Oscillatory activity in the pedunculopontine area of patients with Parkinson's disease.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {59-66}, VOLUME = {211}, KEYWORDS = {EEG}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/androu08.pdf} } @ARTICLE{brodersen_08, AUTHOR = {K H Brodersen and W D Penny and L M Harrison and J Daunizeau and C C Ruff and E Duzel and K J Friston and K E Stephan}, JOURNAL = {Neural Netw}, TITLE = {Integrated Bayesian models of learning and decision making for saccadic eye movements.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1247-60}, VOLUME = {21}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/brodersen08.pdf } } @ARTICLE{friston_08, AUTHOR = {K Friston and C Chu and J Mourao-Miranda and O Hulme and G Rees and W Penny and J Ashburner}, JOURNAL = {Neuroimage}, TITLE = {Bayesian decoding of brain images.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {181-205}, VOLUME = {39}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/friston_decoding_08.pdf } } @ARTICLE{mvb, AUTHOR = {K.J. Friston and C. Chu and Janaina Mourão-Miranda and Oliver Hulme and G. Rees and W.D. Penny and J. Ashburner}, JOURNAL = {NeuroImage}, TITLE = {Bayesian decoding of brain images}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {181--205}, VOLUME = {39}, KEYWORDS = {Bayesian}, DOI = {10.1016/j.neuroimage.2007.08.013} } @ARTICLE{lee_diffusion2, AUTHOR = {L. Harrison and W.D. Penny and J. Daunizeau and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Diffusion-based spatial priors for functional magnetic resonance images}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {408--423}, VOLUME = {41}, KEYWORDS = {fMRI, spatial, bayesian}, DOI = {10.1016/j.neuroimage.2008.02.005} } @ARTICLE{harrison_08b, AUTHOR = {L M Harrison and W Penny and J Daunizeau and K J Friston}, JOURNAL = {Neuroimage}, TITLE = {Diffusion-based spatial priors for functional magnetic resonance images.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {408-23}, VOLUME = {41}, KEYWORDS = {fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/harrison_08.pdf} } @ARTICLE{harrison_08, AUTHOR = {L M Harrison and W Penny and G Flandin and C C Ruff and N Weiskopf and K J Friston}, JOURNAL = {Neuroimage}, TITLE = {Graph-partitioned spatial priors for functional magnetic resonance images.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {694-707}, VOLUME = {43}, KEYWORDS = {fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/graph08.pdf} } @ARTICLE{lee_sparsediffusion, AUTHOR = {L. Harrison and W.D. Penny and G. Flandin and C. Ruff and N. Weiskopf and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Sparse diffusion-based spatial models for functional magnetic resonance images}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTVOLUME = {}, KEYWORDS = {fMRI, spatial}, DOI = {10.1016/j.neuroimage.2008.08.012} } @ARTICLE{penny_08, AUTHOR = {W D Penny and E Duzel and K J Miller and J G Ojemann}, JOURNAL = {J Neurosci Methods}, TITLE = {Testing for nested oscillation.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {50-61}, VOLUME = {174}, KEYWORDS = {EEG}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/penny08.pdf} } @ARTICLE{trujillo_08, AUTHOR = {N Trujillo-Barreto and E Aubert-Vazquez and W Penny}, JOURNAL = {Neuroimage}, TITLE = {Bayesian M/EEG source reconstruction with spatio-temporal priors.}, YEAR = {2008}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {318-35}, VOLUME = {39}, KEYWORDS = {EEG}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/trujillo_08.pdf } } @ARTICLE{gf_sparse_vb, AUTHOR = {G. Flandin and W.D. Penny}, JOURNAL = {NeuroImage}, TITLE = {Bayesian fMRI data analysis with sparse spatial basis function priors}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1108--1125}, VOLUME = {34}, KEYWORDS = {PPM, Bayesian, fMRI, GLM, spatial, hierarchical}, PDF = {/spm/doc/papers/gf_sparse_vb.pdf}, DOI = {10.1016/j.neuroimage.2006.10.005} } @ARTICLE{karl_vb_laplace, AUTHOR = {K.J. Friston and J. Mattout and N. Trujillo-Bareto and J. Ashburner and W.D. Penny}, JOURNAL = {NeuroImage}, TITLE = {Variational free energy and the Laplace approximation}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {220--234}, VOLUME = {34}, DOI = {10.1016/j.neuroimage.2006.08.035} } @ARTICLE{lee_diffusion, AUTHOR = {L. Harrison and W.D. Penny and J. Ashburner and N. Trujillo-Bareto and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Diffusion-based spatial priors for imaging}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {677--695}, VOLUME = {38}, KEYWORDS = {fMRI, GLM, spatial}, DOI = {10.1016/j.neuroimage.2007.07.032} } @ARTICLE{var_laplace, AUTHOR = { K.Friston and J. Mattout and N. Trujillo-Barreto and J. Ashburner and W. Penny}, JOURNAL = {Neuroimage}, TITLE = {Variational free energy and the Laplace approximation}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {220-234}, VOLUME = {34}, KEYWORDS = {Bayes}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/var_laplace.pdf} } @ARTICLE{wp_comparison_07, AUTHOR = {W. D. Penny and G. Flandin and N. Trujillo-Barreto}, JOURNAL = {Human Brain Mapping}, TITLE = {Bayesian comparison of spatially regularised general linear models}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {275-293}, VOLUME = {28}, KEYWORDS = {fMRI, GLM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wp_comparison_07.pdf} } @ARTICLE{fimag_scholarpedia, AUTHOR = {W.D. Penny and K.J. Friston}, JOURNAL = {Scholarpedia}, TITLE = {Functional Imaging}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {1478}, VOLUME = {2}, KEYWORDS = {fMRI, EEG, MEG, introduction}, URL = {http://www.scholarpedia.org/article/Functional_Imaging} } @ARTICLE{scholar_07, AUTHOR = {W. D. Penny and K.J. Friston}, JOURNAL = {Scholarpedia}, TITLE = {Functional Imaging}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {1478}, VOLUME = {2}, KEYWORDS = {fMRI, EEG, MEG}, URL = {http://www.scholarpedia.org/article/Functional_Imaging} } @ARTICLE{rglm_07, AUTHOR = {W. D. Penny and J. Kilner and F. Blankenburg}, JOURNAL = {Neuroimage}, TITLE = {Robust Bayesian General Linear Models}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {661-671}, VOLUME = {36}, KEYWORDS = {fMRI, GLM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wp_rglm_07.pdf} } @ARTICLE{will_robust, AUTHOR = {W.D. Penny and J. Kilner and F. Blankenburg}, JOURNAL = {NeuroImage}, TITLE = {Robust Bayesian General Linear Models}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {661--671}, VOLUME = {36}, KEYWORDS = {GLM}, DOI = {10.1016/j.neuroimage.2007.01.058} } @ARTICLE{klaas_dcm_ext, AUTHOR = {K.E. Stephan and L. Harrison and S.J. Kiebel and O. David and W.D. Penny and K.J. Friston}, JOURNAL = {Journal of Biosciences}, TITLE = {Dynamic causal models of neural system dynamics: current state and future extensions}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {129-144}, OPTVOLUME = {}, KEYWORDS = {DCM, fMRI}, PDF = {/spm/doc/papers/Stephan_JBiosci_32_129_2007.pdf} } @ARTICLE{klaas_current_06, AUTHOR = {K.E. Stephan and L.M. Harrison and S.J. Kiebel and O. David and W.D. Penny and K.J. Friston}, JOURNAL = {Journal of Biosciences}, TITLE = {Dynamic causal models of neural system dynamics: current state and future extensions}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {411-416}, VOLUME = {32}, KEYWORDS = {fMRI, Dynamic}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/Stephan_JBiosci_2007.pdf} } @ARTICLE{klaas_hemi_inter, AUTHOR = {K.E. Stephan and J.C. Marshall and W.D. Penny and K.J. Friston and G.R. Fink}, JOURNAL = {Journal of Neuroscience}, TITLE = {Interhemispheric integration of visual processing during task-driven lateralization}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {3512--3522}, VOLUME = {27}, KEYWORDS = {DCM, fMRI}, PDF = {/spm/doc/papers/Stephan_JNeurosci_27_3512_2007.pdf} } @ARTICLE{klaas_inter_07, AUTHOR = {K.E. Stephan and J.C. Marshall and W. D. Penny and K.J. Friston and G.R. Fink}, JOURNAL = {Journal of Neuroscience}, TITLE = {Interhemispheric integration of visual processing during task-driven lateralization}, YEAR = {2007}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {129-144}, VOLUME = {32}, KEYWORDS = {fMRI, DCM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/klaas_inter_07.pdf} } @INCOLLECTION{wp_stfmri06, AUTHOR = {W. Penny and G. Flandin and N. Trujillo-Barreto}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Spatio-temporal models for fMRI}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {fMRI, Spatial, GLM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/stfmri.pdf} } @INCOLLECTION{wp_brain_06, AUTHOR = {W.D. Penny and K. J. Friston}, BOOKTITLE = {The Bayesian Brain}, PUBLISHER = {}, TITLE = {Bayesian Treatments of Neuroimaging Data}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Doya and I. Naguno}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {fMRI, Dynamic}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wp_brain_06.pdf} } @INCOLLECTION{wp_mar06, AUTHOR = {W. Penny and L. Harrison}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Multivariate autoregressive models}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Dynamic, Autoregressive}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/mar.pdf} } @INCOLLECTION{wp_anova06, AUTHOR = {W. Penny and R. Henson}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Analysis of Variance}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {ANOVA}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/anova.pdf} } @INCOLLECTION{wp_hier06, AUTHOR = {W. Penny and R. Henson}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Hierarchical Models}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Hierarchical, Bayesian}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/hierarchical.pdf} } @INCOLLECTION{wp_rfx06, AUTHOR = {W. Penny and A. Holmes}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Random effects analysis}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {RFX}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/rfx.pdf} } @INCOLLECTION{wp_vb06, AUTHOR = {W. Penny and S. Kiebel and K. Friston}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Variational Bayes}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Variational, Bayesian}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/vb.pdf} } @INCOLLECTION{wp_model06, AUTHOR = {W. Penny and J. Mattout and N. Trujillo-Barreto}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Bayesian model selection and averaging}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Bayesian, BMC, EEG}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/selection.pdf} } @INCOLLECTION{wp_steeg06, AUTHOR = {W. Penny and N. Trujillo-Barreto and E. Aubert}, BOOKTITLE = {Statistical Parametric Mapping: The analysis of functional brain images}, PUBLISHER = {Elsevier, London}, TITLE = {Spatio-temporal models for EEG}, YEAR = {2006}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {K. Friston and J. Ashburner and S. Kiebel and T. Nichols and W. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {EEG, Spatial, GLM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/spm-book/steeg.pdf} } @ARTICLE{jm_multiple, AUTHOR = {J. Mattout and C. Phillips and W.D. Penny and M. Rugg and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {MEG source localization under multiple constraints: an extended Bayesian framework}, YEAR = {2006}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {753--767}, VOLUME = {30}, KEYWORDS = {EEG, MEG}, PDF = {/spm/doc/papers/jm_multiple.pdf}, DOI = {10.1016/j.neuroimage.2005.10.037} } @ARTICLE{uta_fiac, AUTHOR = {U. Noppeney and W.D. Penny}, JOURNAL = {Human Brain Mapping}, TITLE = {Two approaches to repetition suppression}, YEAR = {2006}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {411--416}, VOLUME = {27}, KEYWORDS = {fMRI}, DOI = {10.1002/hbm.20242} } @ARTICLE{uta_fiac_06, AUTHOR = {U. Noppeney and W. D. Penny}, JOURNAL = {Human Brain Mapping}, TITLE = {Two approaches to repetition suppression}, YEAR = {2006}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {411-416}, VOLUME = {27}, KEYWORDS = {fMRI, Mixture}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/uta_fiac_06.pdf} } @ARTICLE{uta_deg_06, AUTHOR = {U. Noppeney and W. D. Penny and C. J. Price and G. Flandin and K. J. Friston}, JOURNAL = {Neuroimage}, TITLE = {Identification of degenerate neuronal systems based on intersubject variability}, YEAR = {2006}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {885-890}, VOLUME = {30}, KEYWORDS = {fMRI, Mixture}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/uta_deg_06.pdf} } @INCOLLECTION{karl_responses, AUTHOR = {K.J. Friston and W.D. Penny and O. David}, BOOKTITLE = {International Review of Neurobiology, Neuroimaging, Part A}, PUBLISHER = {Elsevier}, TITLE = {Modelling brain responses}, YEAR = {2005}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {M.F. Glabus}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Introduction} } @ARTICLE{karl_conj_revisit, AUTHOR = {K.J. Friston and W.D. Penny and D.E. Glaser}, JOURNAL = {NeuroImage}, TITLE = {Conjunction revisited}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {661--667}, VOLUME = {25}, KEYWORDS = {conjunction}, PDF = {/spm/doc/papers/karl_conj_revisit.pdf}, DOI = {10.1016/j.neuroimage.2005.01.013} } @ARTICLE{will_bayes_srglm, AUTHOR = {W.D. Penny and G. Flandin and N. Trujillo-Bareto}, JOURNAL = {Human Brain Mapping}, TITLE = {Bayesian Comparison of Spatially Regularised General Linear Models}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {275--293}, VOLUME = {28}, KEYWORDS = {Bayesian, fMRI, PPM, GLM}, PDF = {/spm/doc/papers/vb4.pdf}, DOI = {doi:10.1002/hbm.20327} } @ARTICLE{will_bds, AUTHOR = {W.D. Penny and Z. Ghahramani and K.J. Friston}, JOURNAL = {Phil Trans R Soc B}, TITLE = {Bilinear Dynamical Systems}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1457}, PAGES = {983--993}, VOLUME = {360}, KEYWORDS = {Dynamic, Markov, fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/penny_bds.pdf}, DOI = {10.1098/rstb.2005.1642} } @ARTICLE{vb2, AUTHOR = {W.D. Penny and N. Trujillo-Bareto and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Bayesian fMRI time series analysis with spatial priors}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {350-362}, VOLUME = {24}, KEYWORDS = {Spatial, fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vb2_2005.pdf}, DOI = {10.1016/j.neuroimage.2004.08.034} } @ARTICLE{klaas_dcm_callosum, AUTHOR = {K.E. Stephan and W.D. Penny and J.C. Marshall and G.R. Fink and K.J. Friston}, JOURNAL = {Ann. N.Y. Acad. Sci.}, TITLE = {Investigating the functional role of Callosal connections with Dynamic Causal Models}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {16--36}, VOLUME = {1064}, KEYWORDS = {DCM}, PDF = {/spm/doc/papers/Stephan_AnnNYAcadSci_1064_16_2005.pdf}, DOI = {10.1196/annals.1340.008} } @ARTICLE{klaas_callosal, AUTHOR = {K.E. Stephan and W.D. Penny and J.C. Marshall and G.R. Fink and K.J. Friston}, JOURNAL = {Annals of the New York Academy of Sciences}, TITLE = {Investigating the functional role of callosal connections by dynamic causal models}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {16-36}, VOLUME = {1064}, KEYWORDS = {DCM, fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/klaas_callosal_dcm_05.pdf} } @ARTICLE{strange2005, AUTHOR = {B. Strange and A. Duggins and W. Penny and R. Dolan and K. Friston}, JOURNAL = {Neural Networks}, TITLE = {Information theory, novelty and hippocampal responses: unpredicted or unpredictable ?}, YEAR = {2005}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {225-230}, VOLUME = {18}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/strange2005.pdf } } @ARTICLE{uta_category, AUTHOR = { U.Noppeney and C.Price and W.Penny and K.Friston}, JOURNAL = {Cerebral Cortex}, TITLE = {Two distinct neural mechanisms for category selective responses}, YEAR = {2005}, OPTMONTH = {}, NOTE = {Accepted}, OPTNUMBER = {}, OPTPAGES = {}, OPTVOLUME = {}, KEYWORDS = {DCM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/category_cc.pdf} } @INCOLLECTION{penny_class4, AUTHOR = {W.D. Penny and K.J. Friston}, BOOKTITLE = {Advanced Image Processing in Magnetic Resonance Imaging}, PUBLISHER = {Marcel Dekker}, TITLE = {Classical and Bayesian Iinference in fMRI}, YEAR = {2004}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {L. Landini}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {introduction}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/classical.pdf} } @ARTICLE{curran_04, AUTHOR = {E. Curran and P. Sykacek and M.Stokes and S.J. Roberts and W. Penny and I. Johnsrude and A.M. Owen}, JOURNAL = {IEEE Transactions on Neural Systems and Rehabilitation Engineering}, TITLE = {Cognitive Tasks for Driving a Brain Computer Interfacing System: A Pilot Study}, YEAR = {2004}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {48--54}, VOLUME = {12}, KEYWORDS = {BCI, EEG} } @ARTICLE{cdcm, AUTHOR = {W.D. Penny and K.E. Stephan and A. Mechelli and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Comparing Dynamic Causal Models}, YEAR = {2004}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1157--1172}, VOLUME = {22}, KEYWORDS = {Bayesian, connectivity, fMRI, DCM, BMC}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/nimg1091.pdf} } @ARTICLE{sem_dcm_integration, AUTHOR = {W.D. Penny and K.E. Stephan and A. Mechelli and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Modelling Functional Integration: A Comparison of Structural Equation and Dynamic Causal and Models}, YEAR = {2004}, OPTMONTH = {}, NOTE = {Supplement 1}, OPTNUMBER = {}, PAGES = {264-274}, VOLUME = {23}, KEYWORDS = {introduction, connectivity, DCM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/integration.pdf} } @ARTICLE{dti_dcm, AUTHOR = {N. Ramnani and T.E.J. Behrens and W.D. Penny and P.M. Matthews}, JOURNAL = {Biological Psychiatry}, TITLE = {New approaches for exploring anatomic and functional connectivity in the human brain}, YEAR = {2004}, OPTMONTH = {}, NOTE = {In Press}, OPTNUMBER = {}, OPTPAGES = {}, OPTVOLUME = {}, KEYWORDS = {introduction, DCM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/new_app.pdf} } @ARTICLE{klaas_biophys, AUTHOR = {K.E. Stephan and L. Harrison and W.D. Penny and K.J. Friston}, JOURNAL = {Current Opinion in Neurobiology}, TITLE = {Biophysical models of fMRI responses}, YEAR = {2004}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {629--635}, VOLUME = {14}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/conb.pdf} } @INCOLLECTION{brett_hbf2, AUTHOR = {M. Brett and W.D. Penny and S.J. Kiebel}, BOOKTITLE = {Human Brain Function}, PUBLISHER = {Academic Press}, TITLE = {Introduction to Random field theory}, YEAR = {2003}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, EDITION = {2nd}, EDITOR = {R.S.J. Frackowiak and K.J. Friston and C. Frith and R. Dolan and K.J. Friston and C.J. Price and S. Zeki and J. Ashburner and W.D. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {introduction, RFT}, PDF = {/spm/doc/books/hbf2/pdfs/Ch14.pdf} } @INCOLLECTION{will_hbf2_bayes, AUTHOR = {W.D. Penny and K.J. Friston}, BOOKTITLE = {Human Brain Function}, PUBLISHER = {Academic Press}, TITLE = {Classical and Bayesian inference}, YEAR = {2003}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, EDITION = {2nd}, EDITOR = {R.S.J. Frackowiak and K.J. Friston and C. Frith and R. Dolan and K.J. Friston and C.J. Price and S. Zeki and J. Ashburner and W.D. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Bayesian, fMRI, hierarchical, nonsphericity, PPM, REML}, PDF = {/spm/doc/books/hbf2/pdfs/Ch17.pdf} } @INCOLLECTION{will_hbf2_hier, AUTHOR = {W.D. Penny and A.P. Holmes and K.J. Friston}, BOOKTITLE = {Human Brain Function}, PUBLISHER = {Academic Press}, TITLE = {Hierarchical Models}, YEAR = {2003}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, EDITION = {2nd}, EDITOR = {R.S.J. Frackowiak and K.J. Friston and C. Frith and R. Dolan and K.J. Friston and C.J. Price and S. Zeki and J. Ashburner and W.D. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Bayesian, GLM, group, introduction, RFX, hierarchical}, PDF = {/spm/doc/books/hbf2/pdfs/Ch13.pdf} } @INCOLLECTION{will_hbf2_rfx, AUTHOR = {W.D. Penny and A.P. Holmes and K.J. Friston}, BOOKTITLE = {Human Brain Function}, PUBLISHER = {Academic Press}, TITLE = {Random effects analysis}, YEAR = {2003}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, EDITION = {2nd}, EDITOR = {R.S.J. Frackowiak and K.J. Friston and C. Frith and R. Dolan and K.J. Friston and C.J. Price and S. Zeki and J. Ashburner and W.D. Penny}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {RFX, group, introduction}, PDF = {/spm/doc/books/hbf2/pdfs/Ch12.pdf} } @ARTICLE{dcm, AUTHOR = {K.J. Friston and L. Harrison and W.D. Penny}, JOURNAL = {NeuroImage}, TITLE = {Dynamic Causal Modelling}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1273--1302}, VOLUME = {19}, KEYWORDS = {connectivity, fMRI, DCM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/dcm.pdf} } @ARTICLE{karl_posterior, AUTHOR = {K.J. Friston and W.D. Penny}, JOURNAL = {NeuroImage}, TITLE = {Posterior probability maps and SPMs}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1240-1249}, VOLUME = {19}, KEYWORDS = {Bayesian, hierarchical, PPM, EM}, PDF = {/spm/doc/papers/karl_posterior.pdf} } @ARTICLE{gitelman_03, AUTHOR = {D.R. Gitelman and W.D. Penny and J. Ashburner and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {200--207}, VOLUME = {19}, KEYWORDS = {connectivity, fMRI, PPI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/ppi_revisited_final.pdf}, DOI = {10.1016/S1053-8119(03)00058-2} } @ARTICLE{harrison03, AUTHOR = {L. Harrison and W.D. Penny and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Multivariate Autoregressive Modelling of fMRI time series}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1477--1491}, VOLUME = {19}, KEY = {connectivity,fMRI}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/mar_june_2003.pdf} } @ARTICLE{penny_mix_glm, AUTHOR = {W.D. Penny and K.J. Friston}, JOURNAL = {IEEE Transactions on Medical Imaging}, TITLE = {Mixtures of General Linear Models for Functional Neuroimaging}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {504--514}, VOLUME = {22}, KEYWORDS = {Mixture, GLM, Bayesian, fMRI, spatial, EM}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/iee_final.ps} } @ARTICLE{vb_fmri_ar, AUTHOR = {W.D. Penny and S.J. Kiebel and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Variational Bayesian Inference for fMRI time series}, YEAR = {2003}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {727--741}, VOLUME = {19}, KEYWORDS = {autocorrelation, Bayesian, fMRI, PPM}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/glmar.pdf} } @ARTICLE{cassidy_mar, AUTHOR = {M.J. Cassidy and W.Penny}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, TITLE = {Bayesian nonstationary autogregressive models for biomedical signal analysis}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1142-1152}, VOLUME = {49}, KEYWORDS = {Variational, EEG, Autoregressive, Dynamic}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bnar.ps} } @ARTICLE{peb1, AUTHOR = {K.J. Friston and W.D. Penny and C. Phillips and S.J. Kiebel and G. Hinton and J. Ashburner}, JOURNAL = {NeuroImage}, TITLE = {Classical and Bayesian Inference in Neuroimaging: Theory}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {465--483}, VOLUME = {16}, KEYWORDS = {Bayesian, PPM, EM, REML}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bayes1.pdf} } @ARTICLE{am_sem, AUTHOR = {A. Mechelli and W.D. Penny and C.J. Price and D.R. Gitelman and K.J. Friston}, JOURNAL = {NeuroImage}, TITLE = {Effective connectivity and intersubject variability: using a multisubject network to test differences and commonalities}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1459-1469}, VOLUME = {17}, KEYWORDS = {connectivity, group}, PDF = {/spm/doc/papers/am_sem.pdf} } @ARTICLE{will_tics, AUTHOR = {W.D. Penny and S.J. Kiebel and J.M. Kilner and M.D. Rugg}, JOURNAL = {Trends in Neuroscience}, TITLE = {Event-related brain dynamics}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {387--389}, VOLUME = {25}, KEYWORDS = {Dynamic, EEG}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/erbd.pdf} } @ARTICLE{penny_vbmar, AUTHOR = {W.D. Penny and S.J. Roberts}, JOURNAL = {IEE Proceedings on Vision, Image and Signal Processing}, TITLE = {Bayesian Multivariate Autoregresive Models with structured priors}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {33--41}, VOLUME = {149}, KEYWORDS = {Variational, EEG, Autoregressive}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/iee_mar.pdf} } @ARTICLE{vb_gar_ieee, AUTHOR = {S.J. Roberts and W.D. Penny}, JOURNAL = {IEEE Transactions on Signal Processing}, TITLE = {Variational Bayes for Generalised Autoregressive models}, YEAR = {2002}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {9}, PAGES = {2245-2257}, VOLUME = {50}, KEYWORDS = {Variational, EEG, Autoregressive, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vbj.ps} } @ARTICLE{will_odds, AUTHOR = {M.R. Johnson, C.D. Good, W.D. Penny, P.R.J. Barnes and J.W. Scadding}, JOURNAL = {British Medical Journal}, TITLE = {Playing the odds in clinical decision making: lessons from berry aneuryisms undetected by magnetic resonance angiography}, YEAR = {2001}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1347-1349}, VOLUME = {322}, KEYWORDS = {Introduction}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/1347.pdf } } @INCOLLECTION{will_ica_order, AUTHOR = {W.D. Penny, S.J. Roberts and R. Everson}, BOOKTITLE = {ICA: Principles and Practice}, PUBLISHER = {Cambridge University Press}, TITLE = {ICA: Model-order selection and dynamic source models}, YEAR = {2000}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {S.J. Roberts and R. Everson}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {299-314}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Variational, ICA, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wpica.ps} } @INCOLLECTION{will_hmm_ica, AUTHOR = {W.D. Penny, R. Everson and S.J. Roberts}, BOOKTITLE = {Advances in Independent Component Analysis}, PUBLISHER = {Springer}, TITLE = {Hidden Markov Independent Component Analysis}, YEAR = {2000}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {M. Giroliami}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {Markov, ICA, Dynamic}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/hmica.ps} } @ARTICLE{rt_bci, AUTHOR = {S.J. Roberts and W.D. Penny}, JOURNAL = {Medical and Biological Engineering and Computing}, TITLE = {Real-Time Brain-Computer Interfacing: A Preliminary Study Using Bayesian Learning}, YEAR = {2000}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {56-61}, VOLUME = {38}, KEYWORDS = {BCI, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/rt_bci2.ps} } @INCOLLECTION{will_bayes_ann, AUTHOR = {W.D. Penny, D. Husmeier and S.J. Roberts}, BOOKTITLE = {Artificial Neural Networks in Biomedicine}, PUBLISHER = {Springer-Verlag}, TITLE = {The Bayesian Paradigm: second generation neural computing}, YEAR = {1999}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {P. Lisboa}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {ANN}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bayes.ps} } @ARTICLE{dirk_nn, AUTHOR = {D. Husmeier and W.D. Penny and S.J. Roberts}, JOURNAL = {Neural Networks}, TITLE = {An empirical evaluation of Bayesian sampling with hybrid Monte Carlo for training neural network classifiers}, YEAR = {1999}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {677-705}, VOLUME = {12}, KEYWORDS = {ANN}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/b_samp.ps} } @ARTICLE{dynamic_hmm, AUTHOR = {W.D. Penny and S.J. Roberts}, JOURNAL = {Computers and Biomedical Research}, TITLE = {Dynamic models for nonstationary signal segmentation}, YEAR = {1999}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {483-502}, VOLUME = {32}, KEYWORDS = {Markov, Dynamic, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/dynamic-tech.ps} } @ARTICLE{bci_ieee_rehab, AUTHOR = {W.D. Penny and S.J. Roberts, E. Curran and M. Stokes}, JOURNAL = {IEEE Transactions on Rehabilitation Engineering}, TITLE = {EEG-based communication: a pattern recognition approach}, YEAR = {1999}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, OPTPAGES = {}, VOLUME = {8}, KEYWORDS = {BCI, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/ieee.ps} } @ARTICLE{evidence, AUTHOR = {W.D. Penny and S.J. Roberts}, JOURNAL = {Neural Networks}, TITLE = {Bayesian neural networks for classification: how useful is the evidence framework ?}, YEAR = {1998}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {877-892}, VOLUME = {12}, KEYWORDS = {ANN, BMC}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/evidence-tech.ps} } @ARTICLE{roberts98, AUTHOR = {S. J. Roberts and D. Husmeier and W. Penny and I. Rezek}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, TITLE = {Bayesian Approaches to Gaussian Mixture Modelling}, YEAR = {1998}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1133-1142}, VOLUME = {20}, KEYWORDS = {Mixture, BMC}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/gmmclust.ps} } @ARTICLE{complexity, AUTHOR = {S.J. Roberts and W. Penny and I. Rezek}, JOURNAL = {Medical and Biological Engineering and Computing}, TITLE = {Temporal and spatial complexity measures for EEG-based brain-computer interfacing}, YEAR = {1998}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {93-99}, VOLUME = {37}, KEYWORDS = {EEG, Complexity, BCI}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bcipap.ps} } @ARTICLE{will_ann_acute, AUTHOR = {W.D. Penny and D. Frost}, JOURNAL = {Computers and Biomedical Research}, TITLE = {Neural network modelling of the level of observation decision in an acute psychiatric ward}, YEAR = {1997}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-17}, VOLUME = {30}, KEYWORDS = {ANN} } @INCOLLECTION{will_ann_psych, AUTHOR = {W.D. Penny and D. Frost}, BOOKTITLE = {Neural Networks and Their Applications}, PUBLISHER = {John Wiley}, TITLE = {Modelling psychiatric decisions with linear regression and neural networks}, YEAR = {1996}, OPTADDRESS = {}, OPTCHAPTER = {}, OPTCROSSREF = {}, OPTEDITION = {}, EDITOR = {J. Taylor}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, OPTSERIES = {}, OPTTYPE = {}, OPTVOLUME = {}, KEYWORDS = {ANN} } @ARTICLE{will_ann_clinical, AUTHOR = {W.D. Penny and D. Frost}, JOURNAL = {Medical Decision Making}, TITLE = {Neural networks in clinical medicine}, YEAR = {1996}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {386-398}, VOLUME = {16}, KEYWORDS = {ANN} } @ARTICLE{roberts_el_lett, AUTHOR = {S. J. Roberts and W. D. Penny}, JOURNAL = {Electronics Letters}, TITLE = {A maximum certainty approach to feedforward neural networks}, YEAR = {1996}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {306-307}, VOLUME = {33}, KEYWORDS = {ANN} } @ARTICLE{friends, AUTHOR = {S.J. Roberts and W.D. Penny}, JOURNAL = {Sensor Review}, TITLE = {Neural networks: friends or foes ?}, YEAR = {1996}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {64-70}, VOLUME = {17}, KEYWORDS = {ANN} } @ARTICLE{sigma_pi, AUTHOR = {W.D. Penny and T.J. Stonham}, JOURNAL = {IEEE Transactions on Neural Networks}, TITLE = {Generalisation in multilayer sigma-pi networks}, YEAR = {1995}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {506--508}, VOLUME = {6}, KEYWORDS = {ANN} } @ARTICLE{will_ann_storage, AUTHOR = {W.D. Penny and T.J.Stonham}, JOURNAL = {Electronics Letters}, TITLE = {Storage capacity of multilayer boolean neural networks}, YEAR = {1993}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {15}, PAGES = {1340-1341}, VOLUME = {29}, KEYWORDS = {ANN} } @INPROCEEDINGS{vb5, AUTHOR = {W.D. Penny and G. Flandin}, BOOKTITLE = {Proceedings of the Joint Statistical Meeting (JSM), Section on Statistical Graphics [CDROM]}, TITLE = {Bayesian analysis of fMRI data with spatial priors}, YEAR = {2005}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, NOTE = {Alexandria, VA: American Statistical Association.}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {PPM, Bayesian, fMRI}, PDF = {/spm/doc/papers/vb5.pdf} } @INPROCEEDINGS{karl_ppm_conf, AUTHOR = {K.J. Friston and W.D. Penny}, BOOKTITLE = {Proceedings of the 9th International Conference on Neural Information Processing (ICONIP'02)}, TITLE = {Bayesian Inference and Posterior Probability Maps}, YEAR = {2002}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {413-417}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {PPM} } @INPROCEEDINGS{roberts_mix_ica, AUTHOR = {S.J. Roberts and W.D. Penny}, BOOKTITLE = {Proceedings of ICANN}, TITLE = {Mixtures of Independent Component Analysers}, YEAR = {2001}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Mixture, ICA}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/mix_icann01.ps} } @INPROCEEDINGS{will_vbar, AUTHOR = {W.D. Penny and S.J. Roberts}, BOOKTITLE = {IEEE Workshop on Neural Networks for Signal Processing, Sydney Australia}, TITLE = {Bayesian Methods for Autoregressive Models}, YEAR = {2000}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Variational, Autoregressive}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vbar2000.ps} } @INPROCEEDINGS{will_vbarm, AUTHOR = {W.D. Penny and S.J. Roberts}, BOOKTITLE = {IEEE Workshop on Neural Networks for Signal Processing, Sydney Australia}, TITLE = {Variational Bayes for Non-Gaussian Autoregressive Models}, YEAR = {2000}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Variational, Autoregressive, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/armog2000.ps} } @INPROCEEDINGS{will_vbica, AUTHOR = {R. Choudrey, W.D. Penny and S.J. Roberts}, BOOKTITLE = {IEEE Workshop on Neural Networks for Signal Processing, Sydney Australia}, TITLE = {An Ensemble Learning Approach to Independent Component Analysis}, YEAR = {2000}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Variational, ICA, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vbICA.ps} } @INPROCEEDINGS{will_hmm_ica_conf, AUTHOR = {W.D. Penny, R. Everson and S.J. Roberts}, BOOKTITLE = {Proceedings of MEDSIP-2000, International Conference on Advances in Medical Signal and Information Processing, IEE}, TITLE = {Hidden Markov Independent Components for Biosignal Analysis}, YEAR = {2000}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Variational, ICA, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/hmicab.ps} } @INPROCEEDINGS{will_dlr, AUTHOR = {W.D. Penny, S.J. Roberts}, BOOKTITLE = {Proceedings IJCNN'99}, TITLE = {Dynamic Logistic Regression}, YEAR = {1999}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {ANN, Dynamic}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/dlr.ps} } @INPROCEEDINGS{will_bci_eeg, AUTHOR = {W.D. Penny, S.J. Roberts}, BOOKTITLE = {Proceedings IJCNN'99}, TITLE = {EEG-based communiction via dynamic neural network models}, YEAR = {1999}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {ANN, Dynamic, BCI}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/pilot.ps} } @INPROCEEDINGS{will_cov, AUTHOR = {W.D. Penny, D. Husmeier and S.J. Roberts}, BOOKTITLE = {Proceedings ICANN'99}, TITLE = {Covariance-based weighting for optimal combination of model predictions}, YEAR = {1999}, OPTADDRESS = {}, OPTCROSSREF = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {826-831}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {ANN, Dynamic}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/dlr.ps} } @INPROCEEDINGS{will_mcmc_conf, AUTHOR = {D. Husmeier, W.D. Penny and S.J. Roberts}, BOOKTITLE = {ICANN 98: Proceedings of the 8th International Conference on Artificial Neural Networks}, TITLE = {Empirical Evaluation of Bayesian Sampling for Neural Classifiers}, YEAR = {1998}, OPTADDRESS = {}, OPTCROSSREF = {}, EDITOR = {M.Boden L.Niklason and T.Ziemke}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, OPTVOLUME = {}, KEYWORDS = {Variational, ICA, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/icann98.ps} } @TECHREPORT{vb3, AUTHOR = {W.D. Penny and G. Flandin}, INSTITUTION = {Wellcome Department of Imaging Neuroscience}, TITLE = {Bayesian analysis of single-subject fMRI: SPM implementation}, YEAR = {2005}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {PPM, Bayesian, fMRI}, PDF = {/spm/doc/papers/vb3.pdf} } @TECHREPORT{klaas_dcm_objfcn, AUTHOR = {K.E. Stephan and K.J. Friston and W.D. Penny}, INSTITUTION = {Wellcome Department of Imaging Neuroscience, ION, UCL}, TITLE = {Computing the objective function in DCM}, YEAR = {2005}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {DCM}, PDF = {/spm/doc/papers/stephan_DCM_ObjFcn_tr05.pdf} } @TECHREPORT{rnah_anova, AUTHOR = {R.N.A. Henson and W.D. Penny}, INSTITUTION = {Wellcome Department of Imaging Neuroscience}, TITLE = {ANOVAs and SPM}, YEAR = {2003}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {ANOVA}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/rik_anova.pdf} } @TECHREPORT{penny_wavelet, AUTHOR = {W.D. Penny}, INSTITUTION = {Wellcome Department of Imaging Neuroscience, ION, UCL}, TITLE = {Wavelet smoothing of fMRI activation images}, YEAR = {2002}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {fMRI, spatial}, PDF = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wave.pdf} } @TECHREPORT{will_kl, AUTHOR = {W.D. Penny}, INSTITUTION = {Wellcome Department of Cognitive Neurology}, TITLE = {Kullback-Liebler Divergences of Normal, Gamma, Dirichlet and Wishart Densities}, YEAR = {2001}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Variational}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/densities.ps } } @TECHREPORT{will_anno, AUTHOR = {W.D. Penny}, INSTITUTION = {Wellcome Department of Imaging Neuroscience, ION, UCL}, TITLE = {Statistical Parametric Mapping: an annotated bibliography}, YEAR = {2001}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {introduction}, URL = {/spm/doc/spmbib.html}, PDF = {/spm/doc/spmbib.pdf} } @TECHREPORT{will_dists, AUTHOR = {W.D. Penny}, INSTITUTION = {Wellcome Department of Cognitive Neurology}, TITLE = {The Normal, Chi^2, t and F Probability Distributions}, YEAR = {2001}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {ANOVA, Introduction}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/pdfs.ps} } @TECHREPORT{will_vb_gmmd, AUTHOR = {W.D. Penny}, INSTITUTION = {Wellcome Department of Cognitive Neurology, University College London}, TITLE = {Variational Bayes for d-dimensional Gaussian mixture models}, YEAR = {2001}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Variational, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vbgmm.ps} } @TECHREPORT{will_notes_var, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Engineering Science, Oxford University}, TITLE = {Notes on Variational Learning}, YEAR = {2001}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Variational}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/var.ps} } @TECHREPORT{will_vb_gmm1, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Engineering Science, Oxford University}, TITLE = {Variational Bayes for 1-dimensional mixture models}, YEAR = {2000}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Variational, Mixture}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vbmog.ps} } @TECHREPORT{will_dyn_lin, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Dynamic Linear Models, Recursive Least Squares and Steepest Descent Learning}, YEAR = {1998}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Markov, Dynamic}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/kalman.ps} } @TECHREPORT{will_error, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Error bars for linear and nonlinear neural network regression models}, YEAR = {1998}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {ANN}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/error_bars.ps} } @TECHREPORT{will_hmm_eeg, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Gaussian Observation Hidden Markov Models for EEG analysis}, YEAR = {1998}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {Markov, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/hmm_eeg.ps} } @TECHREPORT{will_hmm_obs, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Hidden Markov Models with Extended Observation Densities}, YEAR = {1998}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/hmm_obs.ps} } @TECHREPORT{offline, AUTHOR = {W.D. Penny and S.J. Roberts and M.J. Stokes}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Imagined hand movements identified from the EEG mu-rhythm}, YEAR = {1998}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {BCI, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/imag-tech.ps} } @TECHREPORT{will_imag_tech, AUTHOR = {W.D. Penny and S.J. Roberts}, INSTITUTION = {Department of Electrical Engineering, Imperial College, London}, TITLE = {Bayesian neural networks for detection of imagined finger movements from single-trial EEG}, YEAR = {1997}, OPTADDRESS = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTTYPE = {}, KEYWORDS = {BCI, EEG}, PS = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bayes-eeg.ps} }