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Statistical
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By members and collaborators of the Functional Imaging Laboratory


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Publications of K.E. Stephan

Articles in journal, book chapters

  1. L. Rigoux, K.E. Stephan, K.J. Friston, and J. Daunizeau. Bayesian model selection for group studies -- Revisited. NeuroImage, 84:971-985, 2014. [WWW] [doi:10.1016/j.neuroimage.2013.08.065] [bibtex-entry]


  2. J. Daunizeau, L. Lemieux, A.E. Vaudano, K.J. Friston, and K.E. Stephan. An electrophysiological validation of stochastic DCM for fMRI. Frontiers in Computational Neuroscience, 6(103), 2013. [doi:10.3389/fncom.2012.00103] Keyword(s): DCM. [bibtex-entry]


  3. K.E. Stephan. The history of CoCoMac. NeuroImage, 80:46-52, 2013. [WWW] [doi:10.1016/j.neuroimage.2013.03.016] Keyword(s): connectivity. [bibtex-entry]


  4. J. Daunizeau, K.E. Stephan, and K.J. Friston. Stochastic Dynamic Causal Modelling of fMRI data: should we care about neural noise?. NeuroImage, 62(1):464-481, 2012. [doi:10.1016/j.neuroimage.2012.04.061] Keyword(s): DCM. [bibtex-entry]


  5. K.J. Friston, A. Bastos, V. Litvak, K.E. Stephan, P. Fries, and R. Moran. DCM for complex-valued data: Cross-spectra, coherence and phase-delays. NeuroImage, 59(1):439-455, 2012. [doi:10.1016/j.neuroimage.2011.07.048] [bibtex-entry]


  6. Kay H. Brodersen, Florent Haiss, Cheng Soon Ong, Fabienne Jung, Marc Tittgemeyer, Joachim M. Buhmann, Bruno Weber, and K.E. Stephan. Model-based feature construction for multivariate decoding. NeuroImage, 56(2):601-615, 2011. [PDF] [doi:10.1016/j.neuroimage.2010.04.036] [bibtex-entry]


  7. K.H Brodersen, T.M. Schofield, A.P. Leff, C.S. Ong, E.I. Lomakina, J.M. Buhmann, and K.E. Stephan. Generative Embedding for Model-Based Classification of fMRI Data. PLOS Computational Biology, 7(6):e1002079, 2011. [PDF] [doi:10.1371/journal.pcbi.1002079] Keyword(s): DCM. [bibtex-entry]


  8. J. Daunizeau, O. David, and K.E. Stephan. Dynamic causal modelling: A critical review of the biophysical and statistical foundations. NeuroImage, 58:312-322, 2011. [PDF] [doi:10.1016/j.neuroimage.2009.11.062] Keyword(s): DCM. [bibtex-entry]


  9. J. Daunizeau, K. Preuschoff, K.J. Friston, and K.E. Stephan. Optimizing experimental design for comparing models of brain function. PLoS Comp. Biol., 7(11):e1002280, 2011. [doi:10.1371/journal.pcbi.1002280] Keyword(s): DCM. [bibtex-entry]


  10. R. Moran, K.E. Stephan, R. Dolan, and K.J. Friston. Neural fields, spectral responses and lateral connections. NeuroImage, 55(4):1694-1708, 2011. [WWW] [doi:10.1016/j.neuroimage.2011.01.012] [bibtex-entry]


  11. J. Daunizeau, H.E.M den Ouden, M. Pessiglione, S.J. Kiebel, K.J. Friston, and K.E. Stephan. Observing the observer (II): deciding when to decide. Plos One, 5(12):e15555, 2010. [PDF] [doi:10.1371/journal.pone.0015555] Keyword(s): Bayesian. [bibtex-entry]


  12. J. Daunizeau, H.E.M den Ouden, M. Pessiglione, K.E. Stephan, S.J. Kiebel, and K.J. Friston. Observing the observer (I): meta-Bayesian models of learning and decision-making. Plos One, 5(12):e15554, 2010. [PDF] [doi:10.1371/journal.pone.0015554] Keyword(s): Bayesian. [bibtex-entry]


  13. K.J. Friston, B. Li, J. Daunizeau, and K.E. Stephan. Network discovery with DCM. NeuroImage, in press, 2010. [doi:10.1016/j.neuroimage.2010.12.039] Keyword(s): DCM. [bibtex-entry]


  14. K.J. Friston, K.E. Stephan, Baojuan Li, and J. Daunizeau. Generalised Filtering. Mathematical Problems in Engineering, 621670, 2010. [PDF] [doi:10.1155/2010/621670] Keyword(s): DEM. [bibtex-entry]


  15. C.H. Kasess, K.E. Stephan, A. Weissenbacher, L. Pezawas, E. Moser, and C. Windischberger. Multi-Subject Analyses with Dynamic Causal Modeling. NeuroImage, 49(4):3065-3074, 2010. [doi:10.1016/j.neuroimage.2009.11.037] [bibtex-entry]


  16. W.D. Penny, K.E. Stephan, J. Daunizeau, M.J. Rosa, K.J. Friston, T.M.Schofield, and A.P. Leff. Comparing Families of Dynamic Causal Models. PLoS Comput Biol, 6(3):e1000709, 2010. [PDF] [doi:10.1371/journal.pcbi.1000709] [bibtex-entry]


  17. K.E. Stephan and K.J. Friston. Analyzing effective connectivity with functional magnetic resonance imaging. WIREs Cognitive Sience, 1:446-459, 2010. [PDF] [doi:10.1002/wcs.58] Keyword(s): DCM, fMRI. [bibtex-entry]


  18. K.E. Stephan, W.D. Penny, R. Moran, H.E. Den Ouden, J. Daunizeau, and K.J. Friston. Ten simple rules for dynamic causal modelling. NeuroImage, 49(4):3099-3109, 2010. [PDF] [doi:10.1016/j.neuroimage.2009.11.015] Keyword(s): DCM. [bibtex-entry]


  19. H. den Ouden, J. Daunizeau, J. Roiser, K.J. Friston, and K.E. Stephan. Striatal Prediction Error Modulates Cortical Coupling. Journal of Neuroscience, 30(9):3210-3219, 2010. [PDF] [doi:10.1523/JNEUROSCI.4458-09.2010] [bibtex-entry]


  20. C.C. Chen, R.N.A. Henson, K.E. Stephan, J. Kilner, and K.J. Friston. Forward and backward connections in the brain: A DCM study of functional asymmetries. NeuroImage, 45(2):453-462, 2009. [doi:10.1016/j.neuroimage.2008.12.041] Keyword(s): DCM, MEG. [bibtex-entry]


  21. R. Moran, K.E. Stephan, T. Seidenbecher, H.C. Pape, R. Dolan, and K.J. Friston. Dynamic causal models of steady-state responses. NeuroImage, 44(3):796-811, 2009. [doi:10.1016/j.neuroimage.2008.09.048] Keyword(s): DCM. [bibtex-entry]


  22. K.E. Stephan, K.J. Friston, and C. Frith. Dysconnection in Schizophrenia: From Abnormal Synaptic Plasticity to Failures of Self-monitoring. Schizophrenia Bulletin, 35(3):509-527, 2009. [PDF] [doi:10.1093/schbul/sbn176] [bibtex-entry]


  23. K.E. Stephan, W.D. Penny, J. Daunizeau, R. Moran, and K.J. Friston. Bayesian model selection for group studies. NeuroImage, 46(3):1004-10174, 2009. [PDF] [doi:10.1016/j.neuroimage.2009.03.025] Keyword(s): DCM, BMC, Bayesian, group. [bibtex-entry]


  24. K.E. Stephan, M. Tittgemeyer, T.R. Knosche, R. Moran, and K.J. Friston. Tractography-based priors for dynamic causal models. NeuroImage, 47(1):1628-1638, 2009. [PDF] [doi:10.1016/j.neuroimage.2009.05.096] [bibtex-entry]


  25. M.I. Garrido, K.J. Friston, K.E. Stephan, S.J. Kiebel, T. Baldeweg, and J. Kilner. The functional anatomy of the MMN: A DCM study of the roving paradigm. NeuroImage, 42(2):936-944, 2008. [PDF] [doi:10.1016/j.neuroimage.2008.05.018] Keyword(s): DCM, EEG. [bibtex-entry]


  26. K.E. Stephan, L. Kasper, L. Harrison, J. Daunizeau, H. den Ouden, M. Breakspear, and K.J. Friston. Nonlinear Dynamic Causal Models for FMRI. NeuroImage, 42(2):649-662, 2008. [PDF] [doi:10.1016/j.neuroimage.2008.04.262] Keyword(s): DCM, fMRI. [bibtex-entry]


  27. K.E. Stephan, J.J. Riera, G. Deco, and B. Horwitz. The Brain Connectivity Workshops: Moving the frontiers of computational systems neuroscience. NeuroImage, 42(1):1-9, 2008. [PDF] [doi:10.1016/j.neuroimage.2008.04.167] Keyword(s): DCM. [bibtex-entry]


  28. M.I. Garrido, J. Kilner, S.J. Kiebel, K.E. Stephan, and K.J. Friston. Dynamic causal modelling of evoked potentials: A reproducibility study. NeuroImage, 36:571-580, 2007. [PDF] [doi:10.1016/j.neuroimage.2007.03.014] Keyword(s): DCM, EEG, MEG. [bibtex-entry]


  29. R. Moran, S.J. Kiebel, K.E. Stephan, R.B. Reilly, J. Daunizeau, and K.J. Friston. A neural mass model of spectral responses in electrophysiology. NeuroImage, 37(3):706-720, 2007. [PDF] [doi:10.1016/j.neuroimage.2007.05.032] Keyword(s): EEG. [bibtex-entry]


  30. K.E. Stephan, L. Harrison, S.J. Kiebel, O. David, W.D. Penny, and K.J. Friston. Dynamic causal models of neural system dynamics: current state and future extensions. Journal of Biosciences, pp 129-144, 2007. [PDF] Keyword(s): DCM, fMRI. [bibtex-entry]


  31. K.E. Stephan, J.C. Marshall, W.D. Penny, K.J. Friston, and G.R. Fink. Interhemispheric integration of visual processing during task-driven lateralization. Journal of Neuroscience, 27:3512-3522, 2007. [PDF] Keyword(s): DCM, fMRI. [bibtex-entry]


  32. K.E. Stephan, N. Weiskopf, P.M. Drysdale, P.A. Robinson, and K.J. Friston. Comparing hemodynamic models with DCM. NeuroImage, 38:387-401, 2007. [PDF] [doi:10.1016/j.neuroimage.2007.07.040] Keyword(s): DCM, bayesian. [bibtex-entry]


  33. K.J. Friston, K.E. Stephan, T.E. Lund, A. Morcom, and S.J. Kiebel. Mixed-effects and fMRI studies. NeuroImage, 24:244-252, 2005. [PDF] Keyword(s): fMRI, GLM. [bibtex-entry]


  34. K.E. Stephan, W.D. Penny, J.C. Marshall, G.R. Fink, and K.J. Friston. Investigating the functional role of Callosal connections with Dynamic Causal Models. Ann. N.Y. Acad. Sci., 1064:16-36, 2005. [PDF] [doi:10.1196/annals.1340.008] Keyword(s): DCM. [bibtex-entry]


  35. W.D. Penny, K.E. Stephan, A. Mechelli, and K.J. Friston. Comparing Dynamic Causal Models. NeuroImage, 22(3):1157-1172, 2004. [PDF] Keyword(s): Bayesian, connectivity, fMRI, DCM, BMC. [bibtex-entry]


  36. W.D. Penny, K.E. Stephan, A. Mechelli, and K.J. Friston. Modelling Functional Integration: A Comparison of Structural Equation and Dynamic Causal and Models. NeuroImage, 23:264-274, 2004. Note: Supplement 1. [PDF] Keyword(s): introduction, connectivity, DCM. [bibtex-entry]


  37. K.E. Stephan. On the role of general system theory for functional neuroimaging. Journal of Anatomy, 205:443-470, 2004. [PDF] Keyword(s): DCM. [bibtex-entry]


  38. K.E. Stephan, L. Harrison, W.D. Penny, and K.J. Friston. Biophysical models of fMRI responses. Current Opinion in Neurobiology, 14(5):629-635, 2004. [PDF] [bibtex-entry]


Conference articles

  1. R. Moran, K.E. Stephan, F. Jung, R. Graf, R. Dolan, K.J. Friston, and M. Tittgemeyer. DCM for Steady State Responses: a case study of anaesthesia dept. In Proc Soc for Neuroscience, 2009. [bibtex-entry]


Internal reports

  1. K.E. Stephan, K.J. Friston, and W.D. Penny. Computing the objective function in DCM. Technical report, Wellcome Department of Imaging Neuroscience, ION, UCL, 2005. [PDF] Keyword(s): DCM. [bibtex-entry]



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Last modified: Wed Nov 22 15:33:42 2023
Author: spm.

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